
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0344.11
(579 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), co... 51 2e-06
TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete 46 5e-05
TC228657 similar to GB|BAA97157.1|8809606|AB018117 ethylene resp... 32 0.60
CA784687 similar to SP|Q9JX33|DXR_N 1-deoxy-D-xylulose 5-phospha... 31 1.3
TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A... 29 5.1
AI495269 similar to GP|20197988|gb expressed protein {Arabidopsi... 29 5.1
TC218923 similar to GB|AAP37755.1|30725466|BT008396 At1g68580 {A... 28 8.6
AW278890 weakly similar to GP|18698662|gb disease-resistent-rela... 28 8.6
>TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), complete
Length = 2128
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Frame = +1
Query: 407 PITLDQRLFLDPHVLDIDLPSSRTSVPASMSASGTHSVIAELEAISKELQETIRIAAARK 466
P++L +LF HV DI S + + ++S ++IAEL+ K L+ TI+ +K
Sbjct: 1717 PLSLHYKLFEGTHVPDIVSTSGKAAASGAVSKD---ALIAELKDTCKVLEATIKATTEKK 1887
Query: 467 IKVDALIQTLKE------EAGQEGEHAADAEREGSAENDE 500
++++ LI+ L E EA +E E AA+ E E + E ++
Sbjct: 1888 MELERLIKRLSESGIDDGEAAEEEEEAAEEEEEAAEEEED 2007
>TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete
Length = 1974
Score = 45.8 bits (107), Expect = 5e-05
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Frame = +1
Query: 401 VKPIGPPITLDQRLFLDPHVLDIDLPSSRTSVPASMSASGTHSVIAELEAISKELQETIR 460
VK ++L +LF HV DI S + + +++ ++IAEL+ K L+ TI+
Sbjct: 1636 VKKRESALSLHYKLFEGTHVPDIVSTSGKAAASGAVTKD---ALIAELKDTCKVLEATIK 1806
Query: 461 IAAARKIKVDALIQTLKE------EAGQEGEHAADAEREGSAENDEEHSSS 505
+K++++ LI+ L + EA +E E AA+ E++ + + + + S
Sbjct: 1807 ATTEKKMELERLIKRLSDSGIDDGEAAEEEEEAAEEEKDAAEDTESDDDDS 1959
>TC228657 similar to GB|BAA97157.1|8809606|AB018117 ethylene responsive
element binding factor 5 (ATERF5) {Arabidopsis
thaliana;} , partial (32%)
Length = 884
Score = 32.3 bits (72), Expect = 0.60
Identities = 19/68 (27%), Positives = 31/68 (44%)
Frame = +2
Query: 87 HLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARKRLPY 146
HLQ ++ ++L R H +G+ + + GS +S R PK+ + RKR
Sbjct: 206 HLQLHLQLQILHRHHRANRVEGRRCKSLSRRRPSGSNLES-PRLPKRCRRVTRTRKRRST 382
Query: 147 TPEAKRPK 154
T E R +
Sbjct: 383 TEECDRDR 406
>CA784687 similar to SP|Q9JX33|DXR_N 1-deoxy-D-xylulose 5-phosphate
reductoisomerase (EC 1.1.1.267) (DXP reductoisomerase),
partial (6%)
Length = 437
Score = 31.2 bits (69), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = -1
Query: 377 NLVGGVHNECWKELEGKVDKFWNM------VKPIGPPITLDQ 412
N V H +CWK + ++W++ V +G PITLD+
Sbjct: 299 NKVRQTHAQCWKRVHEFSQEYWDLQLLFEIVGAVGSPITLDE 174
>TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;} , partial (38%)
Length = 840
Score = 29.3 bits (64), Expect = 5.1
Identities = 24/86 (27%), Positives = 39/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 82 PRTATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGS--GKDSYQRAPKKSMEDSL 139
P+T T +K T++L R H+ P + F+Q + FGS GK AP++ +
Sbjct: 302 PKTPTRRRKSQNTKLLSRSHK-SNPTH*YRVGFQQLRSFGSLTGKRRVLHAPRRGNPSEV 478
Query: 140 ARKRLPYTPEAKRPKLEPNLQSHKLI 165
L KR +L P H+++
Sbjct: 479 P---LHCPRHGKRRRLAPMQALHQML 547
>AI495269 similar to GP|20197988|gb expressed protein {Arabidopsis thaliana},
partial (25%)
Length = 399
Score = 29.3 bits (64), Expect = 5.1
Identities = 15/42 (35%), Positives = 20/42 (46%)
Frame = +1
Query: 159 LQSHKLIKTKFKPSEDMKLTPTQLHLAAYIFHPDNIQTETIF 200
L SH ++T K + PTQ A+ FHP N E +F
Sbjct: 85 LSSHCTVETATKTFKKCMNLPTQQASIAWTFHPHNSTLELVF 210
>TC218923 similar to GB|AAP37755.1|30725466|BT008396 At1g68580 {Arabidopsis
thaliana;} , partial (26%)
Length = 1030
Score = 28.5 bits (62), Expect = 8.6
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -1
Query: 154 KLEPNLQSHK----LIKTKFKPSEDMKLTPTQLHLAAYIFHPDNIQTETIFKIGNISATV 209
K +P L+S+K +I KF+ + + TPT+L + I P+N +F I +
Sbjct: 679 KAQPLLRSYKSSRCMIFIKFQANIRLSGTPTRLQVQLGIHVPENF----LFPITLNPCYI 512
Query: 210 NDFDCLNPERVVEPEW 225
F + E VV EW
Sbjct: 511 KGFHIIIIELVVAHEW 464
>AW278890 weakly similar to GP|18698662|gb disease-resistent-related protein
{Oryza sativa}, partial (97%)
Length = 400
Score = 28.5 bits (62), Expect = 8.6
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 18/128 (14%)
Frame = +2
Query: 124 KDSYQRAPKKSMEDSLARKRLPYTPEAKRP-----------KLEPNLQSHKLIKTKF--- 169
K + +APKK + ARK P T K+P K+E +S L+ K
Sbjct: 23 KSTRGKAPKKQLATKAARKSAPTTGGVKKPHQYHAGTIALRKIEKYQKSTXLVMQKLPLQ 202
Query: 170 ----KPSEDMKLTPTQLHLAAYIFHPDNIQTETIFKIGNISATVNDFDCLNPERVVEPEW 225
+ED K T LH+ + E +G + N ++ +R+
Sbjct: 203 KLGSXMTEDFK---TDLHVQSRXMLALRKAAEAY--VGKLCRDTN-LGTMHAKRIAIRRK 364
Query: 226 DVRMGRKI 233
D+R+ RKI
Sbjct: 365 DIRLARKI 388
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,303,701
Number of Sequences: 63676
Number of extensions: 360478
Number of successful extensions: 1946
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of query: 579
length of database: 12,639,632
effective HSP length: 102
effective length of query: 477
effective length of database: 6,144,680
effective search space: 2931012360
effective search space used: 2931012360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0344.11