Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.11
         (579 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), co...    51  2e-06
TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete         46  5e-05
TC228657 similar to GB|BAA97157.1|8809606|AB018117 ethylene resp...    32  0.60
CA784687 similar to SP|Q9JX33|DXR_N 1-deoxy-D-xylulose 5-phospha...    31  1.3
TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A...    29  5.1
AI495269 similar to GP|20197988|gb expressed protein {Arabidopsi...    29  5.1
TC218923 similar to GB|AAP37755.1|30725466|BT008396 At1g68580 {A...    28  8.6
AW278890 weakly similar to GP|18698662|gb disease-resistent-rela...    28  8.6

>TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), complete
          Length = 2128

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
 Frame = +1

Query: 407  PITLDQRLFLDPHVLDIDLPSSRTSVPASMSASGTHSVIAELEAISKELQETIRIAAARK 466
            P++L  +LF   HV DI   S + +   ++S     ++IAEL+   K L+ TI+    +K
Sbjct: 1717 PLSLHYKLFEGTHVPDIVSTSGKAAASGAVSKD---ALIAELKDTCKVLEATIKATTEKK 1887

Query: 467  IKVDALIQTLKE------EAGQEGEHAADAEREGSAENDE 500
            ++++ LI+ L E      EA +E E AA+ E E + E ++
Sbjct: 1888 MELERLIKRLSESGIDDGEAAEEEEEAAEEEEEAAEEEED 2007


>TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete
          Length = 1974

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
 Frame = +1

Query: 401  VKPIGPPITLDQRLFLDPHVLDIDLPSSRTSVPASMSASGTHSVIAELEAISKELQETIR 460
            VK     ++L  +LF   HV DI   S + +   +++     ++IAEL+   K L+ TI+
Sbjct: 1636 VKKRESALSLHYKLFEGTHVPDIVSTSGKAAASGAVTKD---ALIAELKDTCKVLEATIK 1806

Query: 461  IAAARKIKVDALIQTLKE------EAGQEGEHAADAEREGSAENDEEHSSS 505
                +K++++ LI+ L +      EA +E E AA+ E++ + + + +   S
Sbjct: 1807 ATTEKKMELERLIKRLSDSGIDDGEAAEEEEEAAEEEKDAAEDTESDDDDS 1959


>TC228657 similar to GB|BAA97157.1|8809606|AB018117 ethylene responsive
           element binding factor 5 (ATERF5) {Arabidopsis
           thaliana;} , partial (32%)
          Length = 884

 Score = 32.3 bits (72), Expect = 0.60
 Identities = 19/68 (27%), Positives = 31/68 (44%)
 Frame = +2

Query: 87  HLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARKRLPY 146
           HLQ  ++ ++L R H     +G+      + +  GS  +S  R PK+    +  RKR   
Sbjct: 206 HLQLHLQLQILHRHHRANRVEGRRCKSLSRRRPSGSNLES-PRLPKRCRRVTRTRKRRST 382

Query: 147 TPEAKRPK 154
           T E  R +
Sbjct: 383 TEECDRDR 406


>CA784687 similar to SP|Q9JX33|DXR_N 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase (EC 1.1.1.267) (DXP reductoisomerase),
           partial (6%)
          Length = 437

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -1

Query: 377 NLVGGVHNECWKELEGKVDKFWNM------VKPIGPPITLDQ 412
           N V   H +CWK +     ++W++      V  +G PITLD+
Sbjct: 299 NKVRQTHAQCWKRVHEFSQEYWDLQLLFEIVGAVGSPITLDE 174


>TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
           thaliana;} , partial (38%)
          Length = 840

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 24/86 (27%), Positives = 39/86 (44%), Gaps = 2/86 (2%)
 Frame = +2

Query: 82  PRTATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGS--GKDSYQRAPKKSMEDSL 139
           P+T T  +K   T++L R H+   P     + F+Q + FGS  GK     AP++     +
Sbjct: 302 PKTPTRRRKSQNTKLLSRSHK-SNPTH*YRVGFQQLRSFGSLTGKRRVLHAPRRGNPSEV 478

Query: 140 ARKRLPYTPEAKRPKLEPNLQSHKLI 165
               L      KR +L P    H+++
Sbjct: 479 P---LHCPRHGKRRRLAPMQALHQML 547


>AI495269 similar to GP|20197988|gb expressed protein {Arabidopsis thaliana},
           partial (25%)
          Length = 399

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/42 (35%), Positives = 20/42 (46%)
 Frame = +1

Query: 159 LQSHKLIKTKFKPSEDMKLTPTQLHLAAYIFHPDNIQTETIF 200
           L SH  ++T  K  +     PTQ    A+ FHP N   E +F
Sbjct: 85  LSSHCTVETATKTFKKCMNLPTQQASIAWTFHPHNSTLELVF 210


>TC218923 similar to GB|AAP37755.1|30725466|BT008396 At1g68580 {Arabidopsis
           thaliana;} , partial (26%)
          Length = 1030

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -1

Query: 154 KLEPNLQSHK----LIKTKFKPSEDMKLTPTQLHLAAYIFHPDNIQTETIFKIGNISATV 209
           K +P L+S+K    +I  KF+ +  +  TPT+L +   I  P+N     +F I      +
Sbjct: 679 KAQPLLRSYKSSRCMIFIKFQANIRLSGTPTRLQVQLGIHVPENF----LFPITLNPCYI 512

Query: 210 NDFDCLNPERVVEPEW 225
             F  +  E VV  EW
Sbjct: 511 KGFHIIIIELVVAHEW 464


>AW278890 weakly similar to GP|18698662|gb disease-resistent-related protein
           {Oryza sativa}, partial (97%)
          Length = 400

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 18/128 (14%)
 Frame = +2

Query: 124 KDSYQRAPKKSMEDSLARKRLPYTPEAKRP-----------KLEPNLQSHKLIKTKF--- 169
           K +  +APKK +    ARK  P T   K+P           K+E   +S  L+  K    
Sbjct: 23  KSTRGKAPKKQLATKAARKSAPTTGGVKKPHQYHAGTIALRKIEKYQKSTXLVMQKLPLQ 202

Query: 170 ----KPSEDMKLTPTQLHLAAYIFHPDNIQTETIFKIGNISATVNDFDCLNPERVVEPEW 225
                 +ED K   T LH+ +          E    +G +    N    ++ +R+     
Sbjct: 203 KLGSXMTEDFK---TDLHVQSRXMLALRKAAEAY--VGKLCRDTN-LGTMHAKRIAIRRK 364

Query: 226 DVRMGRKI 233
           D+R+ RKI
Sbjct: 365 DIRLARKI 388


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,303,701
Number of Sequences: 63676
Number of extensions: 360478
Number of successful extensions: 1946
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of query: 579
length of database: 12,639,632
effective HSP length: 102
effective length of query: 477
effective length of database: 6,144,680
effective search space: 2931012360
effective search space used: 2931012360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)


Lotus: description of TM0344.11