Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0343.7
         (342 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CO985750                                                              420  e-118
TC209360 UP|DMC1_SOYBN (Q96449) Meiotic recombination protein DM...   342  1e-94
BM731583 similar to SP|Q40134|RA51_ DNA repair protein RAD51 hom...   170  7e-43
TC232974 weakly similar to GB|AAK54457.1|20384750|AY032998 DNA r...   105  4e-23
AW203630                                                               59  2e-09
TC234430 similar to GB|CAC14294.1|11064475|ATH296174 Rad51C prot...    54  1e-07
BU765070                                                               35  0.038
BM567671                                                               33  0.19
BF596114                                                               32  0.32
TC232279 weakly similar to GB|AAR24751.1|38604016|BT010973 At5g0...    29  2.7
TC211371                                                               29  2.7
TC209914 weakly similar to UP|RECA_RICPR (P41079) RecA protein (...    29  3.5
TC211751 weakly similar to UP|Q9KBJ7 (Q9KBJ7) Intracellular alka...    28  4.6
TC204446 similar to UP|ATP4_IPOBA (Q40089) ATP synthase delta' c...    28  6.0

>CO985750 
          Length = 835

 Score =  420 bits (1080), Expect = e-118
 Identities = 213/216 (98%), Positives = 214/216 (98%)
 Frame = -3

Query: 127 ELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGA 186
           ELYGEFRSGKTQLCHT CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGA
Sbjct: 833 ELYGEFRSGKTQLCHTXCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGA 654

Query: 187 DVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQM 246
           DVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQM
Sbjct: 653 DVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQM 474

Query: 247 HLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALR 306
           HLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQ+KPIGGNIMAHATTTRLALR
Sbjct: 473 HLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQIKPIGGNIMAHATTTRLALR 294

Query: 307 KGRGEERICKVISSPCLAEAEARFQILAEGVSDVKD 342
           KGRGEERICKVISSPCLAEAEARFQI AEGVSDVKD
Sbjct: 293 KGRGEERICKVISSPCLAEAEARFQICAEGVSDVKD 186


>TC209360 UP|DMC1_SOYBN (Q96449) Meiotic recombination protein DMC1 homolog,
           complete
          Length = 1386

 Score =  342 bits (878), Expect = 1e-94
 Identities = 177/315 (56%), Positives = 228/315 (72%)
 Frame = +2

Query: 28  IEQLQASGIASIDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPM 87
           I++L A GI + DVKKL+DAGI T   +    +K+L  IKG+SEAKVDKI EAA KLV  
Sbjct: 164 IDKLIAQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLVNF 343

Query: 88  GFTSASELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTC 147
           G+ + S+  ++R+S+I+ITTGS+ LD++L GG+ET +ITE +GEFRSGKTQL HTLCV+ 
Sbjct: 344 GYITGSDALLKRKSVIRITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVST 523

Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 207
           QLP +  GG GK  YID EGTFRP R++ IA+RFG++   VL+N+ YARAY  +HQ  LL
Sbjct: 524 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 703

Query: 208 LEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAIV 267
           L  A+ M E  F ++IVDS  AL+R DFSGRGEL+ RQ  LA+ L  L K+A+EF VA+ 
Sbjct: 704 LGLAAKMSEEPFRLLIVDSVIALFRVDFSGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 883

Query: 268 ITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKVISSPCLAEAE 327
           +TNQV+S   G  VF     KP GG+++AHA T RL  RKG+GE+RICKV  +P L EAE
Sbjct: 884 MTNQVISD-PGGGVFVTDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPEAE 1060

Query: 328 ARFQILAEGVSDVKD 342
           A FQI A G++D KD
Sbjct: 1061AVFQITAGGIADAKD 1105


>BM731583 similar to SP|Q40134|RA51_ DNA repair protein RAD51 homolog.
           [Tomato] {Lycopersicon esculentum}, partial (27%)
          Length = 420

 Score =  170 bits (431), Expect = 7e-43
 Identities = 88/106 (83%), Positives = 96/106 (90%)
 Frame = +3

Query: 1   MEQQRHQKTAQQQPQEEGEEIQHGPLPIEQLQASGIASIDVKKLKDAGICTVESVAYTPR 60
           MEQQ+ +     Q Q+E EEIQHGPLP+EQLQASGIA+ DVKKLKDAGICTVESVAYTPR
Sbjct: 114 MEQQQQRP----QQQDEAEEIQHGPLPVEQLQASGIAATDVKKLKDAGICTVESVAYTPR 281

Query: 61  KDLLQIKGISEAKVDKIVEAASKLVPMGFTSASELHVQRESIIQIT 106
           KDLLQIKGISEAKVDKI+EAASKLVPMGFTSASELH QR++IIQIT
Sbjct: 282 KDLLQIKGISEAKVDKIIEAASKLVPMGFTSASELHAQRDAIIQIT 419


>TC232974 weakly similar to GB|AAK54457.1|20384750|AY032998 DNA repair
           protein XRCC3 {Arabidopsis thaliana;} , partial (40%)
          Length = 909

 Score =  105 bits (261), Expect = 4e-23
 Identities = 85/264 (32%), Positives = 125/264 (47%), Gaps = 28/264 (10%)
 Frame = +2

Query: 106 TTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDA 165
           T G   LD+ L GG+   S+TE  GE   GKTQLC  L ++ QLP   GG    +++I  
Sbjct: 44  TLGCPVLDRCLAGGVPCASVTEFVGESGCGKTQLCLQLALSAQLPPSHGGLSASSIFIHT 223

Query: 166 EGTFRPQRLLQIADRF-----GLNGADVLENVAYARAYNTDHQ--------SRLLLEAAS 212
           E  F  +RL  ++  F      L  +D  + V + RA ++ H+           LL + S
Sbjct: 224 EFPFPFRRLRHLSRAFRASHPDLPCSDPCDRV-FLRAVHSAHELLNLIPTIETFLLHSKS 400

Query: 213 MMVETRFAVMIVDSATALYRTDFSGRG-ELSARQMHLAKFLRSLQKLADEFGVAIVITNQ 271
                R  ++++DS  AL+R+DF   G +L  R          L++LA  FG+A+V+TNQ
Sbjct: 401 PWRPVR--IIVIDSIAALFRSDFENTGSDLRRRSSLFFGISGGLRQLAKRFGIAVVVTNQ 574

Query: 272 VVSQV-DGSAVF---------AGPQVKPIGGNIMAHATTTRLALRKGRGE----ERICKV 317
           VV  + DG   F         +G +V P  G   AH   +RL L K   E     R  +V
Sbjct: 575 VVDLIGDGDVSFGSLGNGLYSSGRRVCPALGLAWAHCVNSRLFLSKDEDEPPVKTRKMRV 754

Query: 318 ISSPCLAEAEARFQILAEGVSDVK 341
           + +P L  +   + I  EGV  V+
Sbjct: 755 VFAPHLPHSSCEYVIKGEGVFGVE 826


>AW203630 
          Length = 414

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 42/122 (34%), Positives = 62/122 (50%)
 Frame = +1

Query: 43  KLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPMGFTSASELHVQRESI 102
           KL  AG  T++++A      L++   +SE++  +I+  ASK  P      +  H      
Sbjct: 82  KLLAAGYTTLDAIARASPTHLVRDIDVSESEATEILNLASK--PSALERPNGSH------ 237

Query: 103 IQITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMY 162
              T    +LD IL GGI+   +TE+ G    GKTQ+   L V  Q+P + GG  GKA+Y
Sbjct: 238 ---TAVVGDLDNILGGGIKCKEVTEIGGVPGIGKTQIGIQLAVNVQIPQEYGGLXGKAIY 408

Query: 163 ID 164
           ID
Sbjct: 409 ID 414


>TC234430 similar to GB|CAC14294.1|11064475|ATH296174 Rad51C protein
           {Arabidopsis thaliana;} , partial (54%)
          Length = 789

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 44/151 (29%), Positives = 71/151 (46%), Gaps = 2/151 (1%)
 Frame = +3

Query: 189 LENVAYARAYNTDHQSRLLLEAASMMVETR-FAVMIVDSATALYRTDFSGRGELSARQMH 247
           LEN+ Y    +   Q  L+        E +   ++IVDS T  +R DF    +++ R   
Sbjct: 129 LENIFYFXVCSYTEQIALINYLDKFXXENKDVKILIVDSVTFHFRQDFD---DMALRTRL 299

Query: 248 LAKFLRSLQKLADEFGVAIVITNQV-VSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALR 306
           L++    L KLA +F +A+V+ NQV    ++GS      Q+    G+  +H+ T R+ L 
Sbjct: 300 LSEMALKLMKLAKKFRLAVVMFNQVPTKHIEGSF-----QLTLALGDSWSHSCTNRIIL- 461

Query: 307 KGRGEERICKVISSPCLAEAEARFQILAEGV 337
              G ER   +  SP L  A A + +   G+
Sbjct: 462 FWNGNERHAFIAKSPSLKSASAPYSVTTRGI 554


>BU765070 
          Length = 409

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 23/57 (40%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
 Frame = +3

Query: 116 LDGGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP 171
           L GG+  G I E+YG   SGKT L  H +    +L        G AM +DAE  F P
Sbjct: 153 LGGGLPKGRIIEIYGPESSGKTTLALHAIAEVQKL-------GGNAMLVDAEHAFDP 302


>BM567671 
          Length = 428

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 97  VQRESIIQITTGSRELDKILD-GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGG 155
           V  +++  ++TGS  LD  L  GG+  G + E+YG   SGKT L   +    Q    QGG
Sbjct: 243 VSPKNVPVVSTGSFALDVALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---KQGG 413


>BF596114 
          Length = 395

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = +1

Query: 112 LDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTC 147
           +D +L GG+  G +TEL G F   K     T+C+ C
Sbjct: 127 IDALLRGGLREGQLTELVGSFLVWKDTGMPTVCLNC 234


>TC232279 weakly similar to GB|AAR24751.1|38604016|BT010973 At5g01880
           {Arabidopsis thaliana;} , partial (41%)
          Length = 703

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/40 (37%), Positives = 22/40 (54%)
 Frame = -3

Query: 280 AVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKVIS 319
           A++  P   PI     A+ TTTR+  R+ RG  R+C  +S
Sbjct: 380 ALWKEPYRVPIRELSQANDTTTRIR*RRRRGSSRVCSSVS 261


>TC211371 
          Length = 677

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 226 SATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEF 262
           SA A Y +  SGR  L+  ++ +A   R+L++ ++EF
Sbjct: 354 SACAKYASTISGRSSLAKSRLSMATHFRTLEEKSEEF 244


>TC209914 weakly similar to UP|RECA_RICPR (P41079) RecA protein (Recombinase
           A), partial (39%)
          Length = 1105

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
 Frame = +2

Query: 239 GELSARQMHLAKFLRS--LQKLADEFGVA---IVITNQVVSQVDGSAVFAGPQVKPIGGN 293
           GE+    M +   L S  L+KL     ++   +V  NQV S++     + GP     GGN
Sbjct: 8   GEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGYGGPTEVTCGGN 187

Query: 294 IMAHATTTRLALRK----GRGEERI 314
            +    + RL +++     +GEE +
Sbjct: 188 ALKFYASVRLNIKRIGFVKKGEETL 262


>TC211751 weakly similar to UP|Q9KBJ7 (Q9KBJ7) Intracellular alkaline serine
           protease, partial (27%)
          Length = 763

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/38 (36%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
 Frame = +2

Query: 111 ELDKILDGGIETGSITELYGEFRSGKTQ-LCHTLCVTC 147
           E++ +L G + T SI+ ++GEF +  T+ LC +L   C
Sbjct: 20  EVNPLLFGLLSTFSISFIFGEFSASSTELLCASLATCC 133


>TC204446 similar to UP|ATP4_IPOBA (Q40089) ATP synthase delta' chain,
           mitochondrial precursor  , partial (92%)
          Length = 954

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 93  SELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSG 135
           S LHV++  + ++  G+  L ++ +GGI  G    + GE  +G
Sbjct: 298 SGLHVRQRRLRRVDVGAHFLPRLREGGIRGGGRRHVGGEAAAG 170


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,844,291
Number of Sequences: 63676
Number of extensions: 116311
Number of successful extensions: 589
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of query: 342
length of database: 12,639,632
effective HSP length: 98
effective length of query: 244
effective length of database: 6,399,384
effective search space: 1561449696
effective search space used: 1561449696
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)


Lotus: description of TM0343.7