BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0343.1
(338 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 254 4e-68
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 253 9e-68
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 152 2e-37
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 144 7e-35
CO982036 144 7e-35
BU548243 129 2e-30
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 125 2e-29
TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON li... 76 3e-29
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 117 7e-28
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 118 3e-27
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 118 3e-27
BU549979 115 3e-26
BE211208 107 8e-24
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 89 2e-23
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 102 2e-22
BI321712 101 4e-22
TC213445 80 5e-22
AW185460 100 2e-21
BG508993 99 4e-21
BU764568 95 4e-20
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 254 bits (649), Expect = 4e-68
Identities = 136/329 (41%), Positives = 192/329 (58%)
Frame = +1
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D +LF+ + ++ +YVDDI+ S+ + + F+ + SEF M +G L+YFLG+ V
Sbjct: 3727 DKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQV 3906
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ +FLSQS YA I+ + GM + + TP T KLS D +LYRS+ G+
Sbjct: 3907 KQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGS 4086
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YLT +RPDI+YAV + P H+ +KR+L+YV GT YG+ LV
Sbjct: 4087 LLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVG 4266
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y DADW G D R+STSG C +LG+NLISW SK+Q +S S+AEAEY + S+ W+
Sbjct: 4267 YCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWM 4446
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+ +L E + TL +CDN+SAI +S NPV H RTKHI++ H++R+ V + H
Sbjct: 4447 KQMLKEYNVEQDVMTL-YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKH 4623
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
V + QIADIFTK L F+ R L +
Sbjct: 4624 VDTEEQIADIFTKALDANQFEKLRGKLGI 4710
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 253 bits (646), Expect = 9e-68
Identities = 136/329 (41%), Positives = 192/329 (58%)
Frame = +1
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D +LF+ + ++ +YVDDI+ S+ + + F+ + SEF M +G L+YFLG+ V
Sbjct: 3730 DKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQV 3909
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ +FLSQS YA I+ + GM + + TP T KLS D +LYRS+ G+
Sbjct: 3910 KQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGS 4089
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YLT +RPDI+YAV + P H+ +KR+L+YV GT YG+ + LV
Sbjct: 4090 LLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVG 4269
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y DADW G D R+STSG C +LG NLISW SK+Q +S S+AEAEY + S+ W+
Sbjct: 4270 YCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWM 4449
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+ +L E + TL +CDN+SAI +S NPV H RTKHI++ H++R+ V + H
Sbjct: 4450 KQMLKEYNVEQDVMTL-YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEH 4626
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
V + QIADIFTK L F+ R L +
Sbjct: 4627 VDTEEQIADIFTKALDANQFEKLRGKLGI 4713
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 152 bits (385), Expect = 2e-37
Identities = 72/139 (51%), Positives = 93/139 (66%)
Frame = +2
Query: 177 KLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSE 236
+L Y DADW GCP RRSTSGYCVF+G NL+SW SK+Q ++RSSAEAEYR +A V E
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 237 SCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQA 296
WI+ L EL F ++CDN +A++++ NPV H+RTKHIE+D HF+REK+ +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 297 RVLHVPSRHQIADIFTKGL 315
+ S Q DI TK L
Sbjct: 374 VTEFIGSNDQPVDILTKSL 430
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 144 bits (362), Expect = 7e-35
Identities = 82/222 (36%), Positives = 125/222 (55%), Gaps = 4/222 (1%)
Frame = +1
Query: 110 DATLYRSLAGALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLH 169
D T +R L G+L+YL +RP+I +AV + M P HM A KRVLR ++GT+ G+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV- 186
Query: 170 LYP----SPIAKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEA 225
L+P S L+ YTD+DW P+ +ST GY D ++ SSK+Q ++ S+ EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 226 EYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIH 285
EY + ++ W+ NLL EL + + DN SAI L+ +P H R+KHIE+ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 286 FVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSL 327
++R++V++G V + + Q+AD+ TK + F S L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>CO982036
Length = 674
Score = 144 bits (362), Expect = 7e-35
Identities = 88/204 (43%), Positives = 114/204 (55%), Gaps = 3/204 (1%)
Frame = -2
Query: 15 YILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTY 74
Y+L+YVD II+ SS L ++ + L S F +K LG L YF+ I V + L S T
Sbjct: 649 YLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEV-KSMPDLLFSLRTS 476
Query: 75 ASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQYLTFTRPDISYA 134
EI R P ++P+ T KLS S T YRS+ GALQY T RP+IS+A
Sbjct: 475 IFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFA 296
Query: 135 VQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYP---SPIAKLVSYTDADWGGCPD 191
V +VC M P H +KR+LRY++G+L+YGL L P S + + DADW D
Sbjct: 295 VNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVD 116
Query: 192 TRRSTSGYCVFLGDNLISWSSKRQ 215
+RSTSG VFLG NLISW +Q
Sbjct: 115 DKRSTSGAAVFLGPNLISWWXXKQ 44
>BU548243
Length = 599
Score = 129 bits (324), Expect = 2e-30
Identities = 66/147 (44%), Positives = 90/147 (60%)
Frame = -1
Query: 183 DADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRN 242
DA W D RST G +FLG NLISW S++Q ++SS EAEYR +A +E WI+
Sbjct: 587 DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408
Query: 243 LLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVP 302
LL+EL P + ++ CDN SA+ ++ N V H RTKH+E+D+ FV EKV Q ++ H+P
Sbjct: 407 LLMELQIPFTPPVIL-CDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 303 SRHQIADIFTKGLPRVLFDDFRSSLSV 329
+ Q A I TK L F +S L+V
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
(16%)
Length = 662
Score = 125 bits (315), Expect = 2e-29
Identities = 77/195 (39%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Frame = +3
Query: 147 TEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCVFLGDN 206
T + A RVL+Y++G GL +++ ++DADW C D+ +S + YC FLG +
Sbjct: 3 TRPLCAATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSS 182
Query: 207 LISWSSKRQPTLSR--SSAEAEYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSA 264
LISW +K+Q T+SR SS+EA+YR + + E W+ LL +LH TL++CDN SA
Sbjct: 183 LISWKAKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLH-----VTLIYCDNQSA 347
Query: 265 IY-LSGNPVHHQRTKHIEMDIHFVREKVARGQAR-VLHVPSRHQIADIFTKGLPRVLFDD 322
+ L ++H + +E+D H VREK +G +L V S +Q+ADIFTK L LF
Sbjct: 348 LQ*LPIKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSS 518
Query: 323 FRSSLSVGE---PPA 334
S L + + PPA
Sbjct: 519 NLSKLGLSDIFLPPA 563
>TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON like protein,
partial (5%)
Length = 799
Score = 76.3 bits (186), Expect(3) = 3e-29
Identities = 39/96 (40%), Positives = 55/96 (56%)
Frame = +1
Query: 142 MHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCV 201
M P M A KRVLRY++GT+ +GL L SP L ++ DA+W RST Y V
Sbjct: 142 MKDPTKIRMQATKRVLRYLKGTIDFGLQLRSSPDQHLRAFYDANWVDNTSDIRSTGAYVV 321
Query: 202 FLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSES 237
+ G ++ISWS K+Q + +SS + EY + + ES
Sbjct: 322 YFGLSVISWSCKKQSIIDKSSTKVEYHKITTTIIES 429
Score = 56.2 bits (134), Expect(3) = 3e-29
Identities = 28/55 (50%), Positives = 35/55 (62%)
Frame = +2
Query: 261 NVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGL 315
N+ A+YL NPV H KH+ +D FV++ VA Q RV HVPS H D+FTK L
Sbjct: 467 NIGAMYLCANPVFHLCMKHLTIDHLFVQDLVANKQLRVSHVPSCH*HVDLFTKAL 631
Score = 33.9 bits (76), Expect(3) = 3e-29
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 102 SSSGTPCEDATLYRSLAGALQYLTFTRPDISYAVQQVCLH 141
+S P D +Y L +LQYL+ T PDI++ + ++ +H
Sbjct: 24 ASGDVPSCDGIVYCQLVDSLQYLSLTCPDIAFPINKLSVH 143
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 117 bits (293), Expect(2) = 7e-28
Identities = 55/109 (50%), Positives = 74/109 (67%)
Frame = +2
Query: 183 DADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRN 242
DA+W P R ST GYCV +G+NL+ W S + ++RSSAEAEY+ + E WI+
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 243 LLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKV 291
LL EL F +Q + CDN +A++++ NPV H+RTKHIE+D HFVREKV
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 24.3 bits (51), Expect(2) = 7e-28
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +3
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
V S Q+A+IFTK L + S L E AST G
Sbjct: 363 VSSNDQLANIFTKSLRGPRIQNICSKLGAFELYAST*G 476
>AI855899 similar to GP|2244960|emb| retrotransposon like protein
{Arabidopsis thaliana}, partial (18%)
Length = 418
Score = 118 bits (296), Expect = 3e-27
Identities = 62/135 (45%), Positives = 83/135 (60%), Gaps = 3/135 (2%)
Frame = +1
Query: 84 MASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQYLTFTRPDISYAVQQVCLHMH 143
M CN +TP+ + KLS +A YR + GALQY+T TRP+I+Y V +V M
Sbjct: 13 MLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFMS 192
Query: 144 APHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS---YTDADWGGCPDTRRSTSGYC 200
+P + L +KR+LRY+ GT+T GL L P+ + +S Y D DWG P RSTSG C
Sbjct: 193 SPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGSC 372
Query: 201 VFLGDNLISWSSKRQ 215
+F G NLI+WSSK+Q
Sbjct: 373 IFSGSNLIAWSSKKQ 417
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 118 bits (296), Expect = 3e-27
Identities = 58/139 (41%), Positives = 86/139 (61%)
Frame = +3
Query: 191 DTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHFP 250
D R+ST+G+ F+GD +W SK+QP ++ S+ EAEY + V + W+RNLL EL P
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 251 LSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADI 310
+ + DN SA+ L+ NPV H+++KHI+ HF+RE + + + ++ +V S+ Q ADI
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 311 FTKGLPRVLFDDFRSSLSV 329
FTK L F RS L V
Sbjct: 369 FTKPLKLETFVKLRSMLGV 425
>BU549979
Length = 615
Score = 115 bits (288), Expect = 3e-26
Identities = 57/180 (31%), Positives = 99/180 (54%), Gaps = 2/180 (1%)
Frame = -1
Query: 145 PHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCVFLG 204
P +H K+V+RY++GT Y L + +++ Y+D+D+ GC D+RRSTSGY L
Sbjct: 591 PGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGYIFMLA 412
Query: 205 DNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHF--PLSQATLVHCDNV 262
D ++SW S +Q ++ S+ E E+ S W+++ + L +S+ ++CDN
Sbjct: 411 DGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKLYCDNF 232
Query: 263 SAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDD 322
+A++++ N R+KHI++ +RE+V + + HV + I D TKG+ F D
Sbjct: 231 AAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTPKNFKD 52
>BE211208
Length = 413
Score = 107 bits (267), Expect = 8e-24
Identities = 55/133 (41%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Frame = +2
Query: 8 RRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTRH-AGG 66
++ ++ Y+L+YVDDII+ S+ L +S + L S F++K LG L YFLGI V G
Sbjct: 8 KKDRNLVYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGS 187
Query: 67 LFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQYLTF 126
+ L+QS Y +++ + MA P ++P+ T +LS + D T+YRS+ GALQY T
Sbjct: 188 VLLTQSKYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTI 367
Query: 127 TRPDISYAVQQVC 139
TRP+IS+A +VC
Sbjct: 368 TRPEISFAANKVC 406
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 88.6 bits (218), Expect(2) = 2e-23
Identities = 44/84 (52%), Positives = 58/84 (68%)
Frame = +3
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
YTDADW G RRSTSGYC F+G NL+S SK+Q ++RSSAEAE+R +A+ + E+ W+
Sbjct: 156 YTDADWAGSVTDRRSTSGYCTFVGGNLVS-*SKKQSVVARSSAEAEFRALAHGICETLWV 332
Query: 241 RNLLLELHFPLSQATLVHCDNVSA 264
+ LL EL S ++CDN SA
Sbjct: 333 KKLLQELKVHSSPPIKLYCDNKSA 404
Score = 38.1 bits (87), Expect(2) = 2e-23
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 131 ISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLH 169
I++AV V MHAP EH+ A R+LRY++G+ GL+
Sbjct: 7 IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRGLY 123
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 102 bits (255), Expect = 2e-22
Identities = 57/135 (42%), Positives = 82/135 (60%)
Frame = -2
Query: 204 GDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVS 263
G+ +K + +RSSA+AEYR +A V E ++ +L EL P++ ++CDN +
Sbjct: 450 GETWXXGGTKNKMXXARSSAKAEYRAMAQGVCEIL*LKRILEELQLPMTLPMKLYCDNKA 271
Query: 264 AIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDF 323
AI +S NPV H RTKH+E+D F++EKV GQ + +P Q+ADIFTKGL R F+ F
Sbjct: 270 AINISQNPVQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTKGLFRPNFEFF 91
Query: 324 RSSLSVGEPPASTAG 338
S L + + A T G
Sbjct: 90 VSKLDMLDIYAPT*G 46
>BI321712
Length = 399
Score = 101 bits (252), Expect = 4e-22
Identities = 51/127 (40%), Positives = 78/127 (61%)
Frame = -3
Query: 16 ILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYA 75
+ LYVDD+I ++ ++ + F +++EF M D+G ++Y+LGI V + G+F++Q YA
Sbjct: 385 LCLYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYA 206
Query: 76 SEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQYLTFTRPDISYAV 135
E++ + M NP TP++ KLS D TLY+SL G+L+YLT TRPDI Y V
Sbjct: 205 KEVLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVV 26
Query: 136 QQVCLHM 142
V +M
Sbjct: 25 GVVSRYM 5
>TC213445
Length = 705
Score = 80.5 bits (197), Expect(2) = 5e-22
Identities = 42/100 (42%), Positives = 58/100 (58%)
Frame = +1
Query: 189 CPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELH 248
C R STS C F+G L+SW SK+Q ++ S+AEAEY + ++ W+R L +
Sbjct: 397 CKTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYG 576
Query: 249 FPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVR 288
L + CDN SAI LS N + + RTKHIE+ HF+R
Sbjct: 577 LKLDHIP-IRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 41.6 bits (96), Expect(2) = 5e-22
Identities = 20/62 (32%), Positives = 33/62 (52%)
Frame = +2
Query: 123 YLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYT 182
YL+ +RP I ++V + P H+ +KR++RY+ G + GL + LV Y+
Sbjct: 215 YLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSYNLVGYS 394
Query: 183 DA 184
DA
Sbjct: 395 DA 400
>AW185460
Length = 411
Score = 99.8 bits (247), Expect = 2e-21
Identities = 48/105 (45%), Positives = 67/105 (63%)
Frame = +2
Query: 127 TRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTDADW 186
TRPDI YA + M +P H A KR+LRY++GT +G+ ++L+ YTD+DW
Sbjct: 92 TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSDW 271
Query: 187 GGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVA 231
G D +STSGY LG + SW+SK+Q T+++S+AEAEY VA
Sbjct: 272 AGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406
>BG508993
Length = 374
Score = 98.6 bits (244), Expect = 4e-21
Identities = 48/121 (39%), Positives = 75/121 (61%)
Frame = +1
Query: 161 RGTLTYGLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSR 220
+GT+ +GL PS KLV + D+D+ G D R+ST+G+ F+GD + +WSSK+Q ++
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 221 SSAEAEYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHI 280
+ EAEY + + W+R LL EL ++T ++ DN SA L+ N V H+R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 281 E 281
+
Sbjct: 364 D 366
>BU764568
Length = 420
Score = 95.1 bits (235), Expect = 4e-20
Identities = 44/85 (51%), Positives = 59/85 (68%)
Frame = +3
Query: 196 TSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHFPLSQAT 255
TSGYCV +G NLISW SK+Q +++SSAEAEYR +A V E W++ LL EL F
Sbjct: 165 TSGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQM 344
Query: 256 LVHCDNVSAIYLSGNPVHHQRTKHI 280
+ CDN +A++++ NP+ H RTKHI
Sbjct: 345 TLICDNQAALHIASNPIFH*RTKHI 419
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,284,455
Number of Sequences: 63676
Number of extensions: 247345
Number of successful extensions: 1301
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of query: 338
length of database: 12,639,632
effective HSP length: 98
effective length of query: 240
effective length of database: 6,399,384
effective search space: 1535852160
effective search space used: 1535852160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0343.1