BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0342b.10
(1246 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 157 4e-38
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 69 2e-21
CO982349 100 5e-21
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 65 6e-20
TC213164 82 2e-15
TC231922 76 1e-13
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 72 1e-12
CA851073 70 4e-12
AW757033 70 8e-12
TC231841 69 1e-11
TC221865 69 1e-11
TC222557 69 2e-11
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase... 68 3e-11
BI972659 67 6e-11
TC233392 65 2e-10
CA851030 64 3e-10
CO986021 63 7e-10
CF921567 62 1e-09
CO984521 62 2e-09
BM891241 50 2e-09
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 157 bits (396), Expect = 4e-38
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 1/290 (0%)
Frame = +1
Query: 446 QSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLS 505
+S+K+ + KVD KAYD + W F+ + F P WI + V+ A+ + VNG +
Sbjct: 46 RSNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEECVKSASISVLVNGSPT 225
Query: 506 PSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADD 565
+P RGLRQGDPL+P+LF + + L+ ++ +A +E + A ++ L +ADD
Sbjct: 226 AEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLVGANGVPISILQYADD 405
Query: 566 SLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGL-IFGKLAPFRNKRDIANLLHMPI 624
++ F EA+ +I +L + S +IN AKS +FG + K++ AN LH +
Sbjct: 406 TIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVFGVTDQW--KQEAANYLHCSL 579
Query: 625 WDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSY 684
P YLG+P + H I K + KL WK ++ G+ LIK+++ +IP Y
Sbjct: 580 LAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGGRVTLIKSVLTSIPIY 759
Query: 685 AMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGM 734
+ P++ + L + F W + I W W+K+ L KE+GG+
Sbjct: 760 FFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPKERGGI 909
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 68.9 bits (167), Expect(2) = 2e-21
Identities = 38/131 (29%), Positives = 70/131 (53%)
Frame = -2
Query: 558 THLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIA 617
+H+ ADD ++F + + R ++I LY + GQ I+ KS + G + P + R I+
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSI-PGQRLRVIS 275
Query: 618 NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAI 677
+LL D P +Y G+P G+ L + +K+K KL WK ++L+ G+ L+ ++
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 678 IQAIPSYAMTI 688
I + Y+ ++
Sbjct: 94 IHGMLLYSFSV 62
Score = 53.1 bits (126), Expect(2) = 2e-21
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = -3
Query: 427 IQDNIVVAQEAFHLLLK---GGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
I+D V E ++L K GG +ALK+D+ KA+D L+ F+ L +G+ T+
Sbjct: 834 IKDCTCVTSEVINMLDKKVFGGN-----LALKIDIVKAFDTLDRDFLISVLNKFGYSHTF 670
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLF 525
+ + ++ A + VNG RG+RQGDPLSP L+
Sbjct: 669 CNWIRVILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
>CO982349
Length = 795
Score = 100 bits (248), Expect = 5e-21
Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 5/242 (2%)
Frame = +3
Query: 491 VRGATYRLKVNGFLSPSLI----PGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFF 546
+RG + V+ ++ S I P RGLRQGDPL+P LF + + L+ ++ +A +F
Sbjct: 72 IRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFN 251
Query: 547 GLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGK 606
++ L +ADD++ F EA++ I +L + ASG KIN A+S FG
Sbjct: 252 SFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESR--FGA 425
Query: 607 L-APFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLL 665
+ P ++ A L+ + P YLG+P I K + KL WK+ +
Sbjct: 426 IWKPDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHI 605
Query: 666 NQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKM 725
+ G+ LI AI+ A+P Y + P L + F W R I W W+ +
Sbjct: 606 SLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETV 785
Query: 726 TL 727
L
Sbjct: 786 CL 791
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like
protein {Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 65.1 bits (157), Expect(2) = 6e-20
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = -3
Query: 495 TYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAES 554
T L NG + P G+RQ DP++PYLFVL + LS +++ + ++
Sbjct: 653 TMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKKL*RSIQVNRGG 474
Query: 555 PALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKS-GLIFGKL 607
++HL F DD +LF EA++ + I L L++ +SG K+NV K+ +F K+
Sbjct: 473 LLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTKSFLFPKM 312
Score = 52.0 bits (123), Expect(2) = 6e-20
Identities = 28/83 (33%), Positives = 45/83 (53%)
Frame = -2
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
F K + + DI++ L + DD G YLG+P SH+ +I +KV ++ WK
Sbjct: 324 FSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSN 145
Query: 664 LLNQAGKEVLIKAIIQAIPSYAM 686
LL+ G+ L K ++ A+PS+ M
Sbjct: 144 LLSMVGRLTLTK*VV*ALPSHIM 76
>TC213164
Length = 446
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/132 (32%), Positives = 70/132 (52%)
Frame = +3
Query: 305 LILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSE 364
L+ E+ + G K+PGPDGLN F K W +K + + EF+ +
Sbjct: 18 LVARFEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKR 197
Query: 365 INETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGG 424
N +ALIPKV P S+ +++PIS I K++++++ R K+ L ++I Q+ F+ G
Sbjct: 198 SNAFFLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEG 377
Query: 425 RLIQDNIVVAQE 436
R N+V+A E
Sbjct: 378 RHTLHNVVIANE 413
>TC231922
Length = 803
Score = 75.9 bits (185), Expect = 1e-13
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 15/205 (7%)
Frame = -3
Query: 805 WVVGDGKSVQVWGDNWLSSGEALVKPINAA-------DLKVSDL--ISPNGEGWNDNLIK 855
W VG G ++ W D+WLS G L + N +L +S + S N W +
Sbjct: 705 WRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISRQ*NLTISKMGKFSQNARSWEFKWRR 526
Query: 856 GLFQPELAIKI----LQTPVSKFNQA-DVIFWPHTPRGDYTVNSGFRVARNNTIITQTHS 910
LF E A+ + + +S NQA D +FW G Y+ S +R+
Sbjct: 525 RLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKADSSGVYSTKSAYRLLM---------P 373
Query: 911 SSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSG-QCPVCCDSL 969
S S S ++ +W +P + VF W+ + L + NL R+ I CP+C
Sbjct: 372 SISPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQH 193
Query: 970 ETVEHLFLVCPWTRAVWFGSSLQWI 994
E HLF C T+ +W+ S++WI
Sbjct: 192 EEAGHLFFHCKMTKGLWW-ESMRWI 121
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 72.4 bits (176), Expect = 1e-12
Identities = 38/134 (28%), Positives = 62/134 (45%), Gaps = 5/134 (3%)
Frame = +2
Query: 699 LNALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNP 758
L +L F W + R I W +W + L K KGG+G +DLRT N L + W +
Sbjct: 41 LESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLGKWRWDLFYIQ 220
Query: 759 EALWVRVMKSLYFPNTSFMFAALGRNPSWMWRSLLAGRDF-----ISRYSRWVVGDGKSV 813
+ W +V++S Y + + G S W+ L+ + + R + W VG G +
Sbjct: 221 QEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKRETIWKVGGGDRI 400
Query: 814 QVWGDNWLSSGEAL 827
+ W D W ++ +L
Sbjct: 401 KFWEDLWTNTDLSL 442
>CA851073
Length = 633
Score = 70.5 bits (171), Expect = 4e-12
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +1
Query: 878 DVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFL 937
D + W P G Y+ S +R+ + + HV +++ TIW +P + VF
Sbjct: 28 DTMVWKADPCGVYSTKSAYRILM---------TCNRHVSEANIFKTIWKLKIPPRAAVFS 180
Query: 938 WKASHNSLAVKYNLWRKRIS-PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQW 993
W+ + L ++NL R+ +S +CP+C E +HLF C TR +W+ S++W
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWW-ESMRW 348
>AW757033
Length = 441
Score = 69.7 bits (169), Expect = 8e-12
Identities = 46/140 (32%), Positives = 72/140 (50%), Gaps = 1/140 (0%)
Frame = -2
Query: 510 PGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLF 569
P RGLRQGDPL+P LF +A + L+ ++ +A + ++ L +ADD++ F
Sbjct: 425 PHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYADDTIFF 246
Query: 570 AEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGKLA-PFRNKRDIANLLHMPIWDDP 628
EA++ I +L + ASG KIN AKS FG ++ P +++ A ++ + P
Sbjct: 245 GEATMENVRVIKTILRGFELASGLKINFAKSR--FGAISVPD*WRKEAAEFMNCSLLSLP 72
Query: 629 GHYLGLPAIWGRNKSHSLVW 648
YLG+P G N W
Sbjct: 71 FSYLGIPI--GANPRRRETW 18
>TC231841
Length = 791
Score = 68.9 bits (167), Expect = 1e-11
Identities = 51/172 (29%), Positives = 75/172 (42%), Gaps = 3/172 (1%)
Frame = +3
Query: 876 QADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKV 935
Q D W P G YT S + V Q + ++ +W +P K+ +
Sbjct: 57 QGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQ---------QDGVFEELWKLKLPSKITI 209
Query: 936 FLWKASHNSLAVKYNLWRKRIS-PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWI 994
F W+ + L + NL RK+I +CP C + E+ HLF C VW+ SL W
Sbjct: 210 FAWRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWW-ESLSW- 383
Query: 995 VTLEGMGPFD--SWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVF 1044
V L G+ P LQ I + + ++ LA L W+IW+ RNN +F
Sbjct: 384 VNLLGVFPNHPRQHFLQHIYGVTAGMRASRWKWWWLA-LTWTIWKQRNNMIF 536
>TC221865
Length = 1045
Score = 68.9 bits (167), Expect = 1e-11
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 19/259 (7%)
Frame = -3
Query: 805 WVVGDGKSVQVWGDNWLSSGEALVKP------INAADLKVSDLISPNGEG---WNDNLIK 855
W VG G + W D + GE L++ I+ ++ + + E W +
Sbjct: 929 WKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWEWKFQWRR 750
Query: 856 GLFQPELAIKI-LQTPVSKF----NQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHS 910
LF E+ I +S+F + D W P G Y+ S + + ++ T
Sbjct: 749 PLFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQHEAAKANT-- 576
Query: 911 SSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQ-CPVCCDSL 969
+ + IW +P K +F + + L K NL R+++ +G C C +
Sbjct: 575 -------DPAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQVQLNGTLCLFCRNYE 417
Query: 970 ETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDS----WLLQRITILKRLSQDFDREF 1025
E HLF C T+ VW+ SL WI T G F + LQ L L Q ++R
Sbjct: 416 EEASHLFFSCTKTQPVWW-ESLSWINT---SGAFSANPRHHFLQHSFGLLGLKQ-YNR*K 252
Query: 1026 SLLASLLWSIWRGRNNSVF 1044
+L ++IW+ RN ++F
Sbjct: 251 CWWVALTFTIWQHRNRTIF 195
>TC222557
Length = 1002
Score = 68.6 bits (166), Expect = 2e-11
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = +1
Query: 924 IWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSG-QCPVCCDSLETVEHLFLVCPWT 982
+W +P K F W+ + K NLWR+R+ + CP C E HLF CP
Sbjct: 439 LWQLKIPLKATTFAWRLIKERIPTKGNLWRRRVQLNNLMCPFCNRQEEEASHLFFNCPRI 618
Query: 983 RAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNS 1042
+W+ SL W T+ P + T++ + R +L WSIWR RN
Sbjct: 619 LPLWW-ESLAWTKTVGVFSPIPRQNYMQHTLISKGKHLQARWKCWWVALTWSIWRHRNRI 795
Query: 1043 VF 1044
VF
Sbjct: 796 VF 801
>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (15%)
Length = 376
Score = 67.8 bits (164), Expect = 3e-11
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = -2
Query: 314 ITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALI 373
I AV + G +K+PGPDGLN F K+ W +K + + EF + N + +ALI
Sbjct: 375 IKSAVWQCGSVKSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALI 196
Query: 374 PKVDSPESVVQFRPISCCNYILKVISRI 401
PKV P+++ FRPIS + K++++I
Sbjct: 195 PKVKHPQALNDFRPISLIGCVYKIVAKI 112
>BI972659
Length = 453
Score = 66.6 bits (161), Expect = 6e-11
Identities = 48/152 (31%), Positives = 69/152 (44%), Gaps = 3/152 (1%)
Frame = +1
Query: 571 EASVREATSIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRN-KRDIANLLHMPIWDDPG 629
EAS + +L + SG +IN AKS FG + N D A LL+ D P
Sbjct: 7 EASWDNIIVLKSMLRGFEMVSGLRINYAKSQ--FGIVGFQPNWAHDAAQLLNCRQLDIPF 180
Query: 630 HYLGLPAIWGRNKSHSLVW--IEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMT 687
HYLG+P S +VW + K K KL W + L+ G+ LIK+++ A+P Y ++
Sbjct: 181 HYLGMPI--AVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLS 354
Query: 688 IVHFPKTFCNSLNALVANFWWKSQGKDRGIHW 719
P+ + L +L F W I W
Sbjct: 355 FFKIPQRIVDKLVSLQRTFMWGGNQHHNRISW 450
>TC233392
Length = 1145
Score = 65.1 bits (157), Expect = 2e-10
Identities = 45/177 (25%), Positives = 78/177 (43%), Gaps = 9/177 (5%)
Frame = -1
Query: 878 DVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISED---LWNTIWSSHVPQKVK 934
D W H P Y+ S +++ + H+ ED +W +P K
Sbjct: 656 DTWVWKHEPNELYSTRSAYKLLQG------------HLEGEDQDGALQDLWKLKIPAKAS 513
Query: 935 VFLWKASHNSLAVKYNLWRKR-ISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQW 993
+F W+ + L K NL R++ + CP C E H+FL C R +W+ S W
Sbjct: 512 IFAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWW-ESQTW 336
Query: 994 IVTLEGMGPFDSWLLQRITILKRL-----SQDFDREFSLLASLLWSIWRGRNNSVFK 1045
+ +L G+ P + +R L+ + S+ ++R + +L WS+W+ RN +F+
Sbjct: 335 VRSL-GVSPIN----KRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQ 180
>CA851030
Length = 358
Score = 64.3 bits (155), Expect = 3e-10
Identities = 28/61 (45%), Positives = 41/61 (66%)
Frame = +1
Query: 197 AGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNRNRIDRVRDSL 256
A +V++ +D+L +QEE YW QRSR W K DKN++FFH T+QR+ N I +++D
Sbjct: 124 ASTKVVEESLDSLLKQEEEYWQQRSRAIWFKERDKNTEFFHRKTLQRKASNSITKIQDDE 303
Query: 257 G 257
G
Sbjct: 304 G 306
>CO986021
Length = 900
Score = 63.2 bits (152), Expect = 7e-10
Identities = 45/175 (25%), Positives = 78/175 (43%), Gaps = 7/175 (4%)
Frame = -1
Query: 878 DVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFL 937
D + W P G Y+ S +R+ N Q HSS+ ++ W +P + ++F
Sbjct: 783 DSMLWKADPTGIYSTKSAYRLLLPNNRPGQ-HSSNFKIL--------WKLKIPPRAELFS 631
Query: 938 WKASHNSLAVKYNLWRKRISPSG-QCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVT 996
W+ + L+++ NL R+ ++ CP+C + E HLF C T +W+ S+ W T
Sbjct: 630 WRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWW-ESMNWTRT 454
Query: 997 LEGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLW------SIWRGRNNSVFK 1045
L ++L + S F + + LW +IW+ RN+ +FK
Sbjct: 453 L------GAFLDDPAAHFIQFSDGFGAQRNHNRRCLWWIALTSTIWQHRNSLLFK 307
>CF921567
Length = 686
Score = 62.4 bits (150), Expect = 1e-09
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Frame = -1
Query: 886 PRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSL 945
P G Y+ S ++V + + H+S+ I + + N +WS +P + F W+ N L
Sbjct: 680 PNGLYSTKSAYKV------L*EGHASA---IEDRVLNIMWSLKIPPRASAFSWRLFKNRL 528
Query: 946 AVKYNLWRKRIS-PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPF 1003
+ NL R+++S + CP+C E+V HLF C TR++W+ L+W+ +GPF
Sbjct: 527 PTRENLKRRQVSLHTYSCPLCDLEEESVNHLFFNCSKTRSLWW-EPLRWV---NRVGPF 363
>CO984521
Length = 716
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 3/186 (1%)
Frame = -2
Query: 882 WPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKAS 941
W P G Y+ S ++ + T+ + + + +W VP KV +F W+
Sbjct: 634 WAAEPSGCYSTKSAYKALHHVTVGEE---------QDGKFKELWKLRVPLKVAIFAWRLI 482
Query: 942 HNSLAVKYNLWRKRIS-PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGM 1000
+ L K NL +KR+ CP+C ET HLF C +W+ S W V + G+
Sbjct: 481 QDKLPTKANLRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWW-ESQSW-VNMMGV 308
Query: 1001 GPF--DSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQA 1058
P+ D Q I Q ++ A L +SIW+ RN+ +F D + A
Sbjct: 307 FPYQPDQHFSQHIFGASVGLQGKRWQWWWFA-LTYSIWKHRNSIIFSNANFDAHKLMDDA 131
Query: 1059 TRLLST 1064
+L T
Sbjct: 130 VFILWT 113
>BM891241
Length = 407
Score = 50.4 bits (119), Expect(2) = 2e-09
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = -2
Query: 717 IHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSF 776
I W W+ + L K KGG+G +D+ N+A L + W + ++ + LW R++ S Y + F
Sbjct: 382 IPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINSKYGGWSDF 203
Query: 777 MF 778
+
Sbjct: 202 QY 197
Score = 31.2 bits (69), Expect(2) = 2e-09
Identities = 15/52 (28%), Positives = 20/52 (37%), Gaps = 5/52 (9%)
Frame = -3
Query: 786 SWMWRSLL-----AGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPIN 832
S+ WR L + +Y W VG G + W D WL L + N
Sbjct: 174 SYWWRDLRKFYHQSDHSIFHQYMSWKVGCGDKINFWTDKWLGEDYTLEQKYN 19
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,189,197
Number of Sequences: 63676
Number of extensions: 1022624
Number of successful extensions: 4983
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 4867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of query: 1246
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1138
effective length of database: 5,762,624
effective search space: 6557866112
effective search space used: 6557866112
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0342b.10