TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0338.2
         (282 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ273711                                                               84  7e-17
CF922015                                                               60  1e-09
TC205091 weakly similar to UP|Q6TXI7 (Q6TXI7) LRRGT00012, partia...    35  0.050
AI416791                                                               33  0.15
TC222094                                                               32  0.25
TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ...    32  0.32
TC205429 weakly similar to UP|O22600 (O22600) Glycine-rich prote...    30  1.6
AW317150                                                               28  4.7
TC206213 similar to UP|PMXA_MOUSE (Q62066) Paired mesoderm homeo...    28  4.7
AW164264 homologue to GP|24210303|em SI:dZ12F11.3 (collagen type...    28  6.1

>BQ273711 
          Length = 409

 Score = 84.0 bits (206), Expect = 7e-17
 Identities = 41/96 (42%), Positives = 57/96 (58%)
 Frame = -2

Query: 48  QREAALDQNRGLNDFRRQDPPKFTGGTDPDEADLWIQEIEKIFEVLQTSEGAKVGLATYL 107
           +R+    + RGL  FR+  PPKF+G  DP+ A LW+ E EKIFE +   E  KV  AT++
Sbjct: 288 ERDVEPAEYRGLMAFRKNHPPKFSGDYDPEGARLWLAETEKIFEAMGCLEEHKVLYATFM 109

Query: 108 LLGDAEYWWRGARGMMEANHVEVNWNSFRVAFLEKY 143
           L G+AE WW+  +    A    + WN+F+  FLE Y
Sbjct: 108 LQGEAENWWKFVKPSFVAPGGVIPWNAFKDKFLENY 1


>CF922015 
          Length = 172

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = -3

Query: 58  GLNDFRRQDPPKFTGGTDPDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDA 112
           GL+ F+R +PP F GG DP+ A+ W++EIEKIF V++  +  KV  AT++L  +A
Sbjct: 167 GLDRFQRNNPPTFKGGYDPEGAEAWLREIEKIFRVMECQDHQKVLFATHMLADEA 3


>TC205091 weakly similar to UP|Q6TXI7 (Q6TXI7) LRRGT00012, partial (5%)
          Length = 1360

 Score = 34.7 bits (78), Expect = 0.050
 Identities = 20/45 (44%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
 Frame = +1

Query: 73   GTDPDEADL-WIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWW 116
            G D  EA L W  ++E++F     SE  KV LAT    G A YWW
Sbjct: 1153 GKDNVEAYLDWEMKVEQLFACHHISEERKVPLATLSFQGYALYWW 1287


>AI416791 
          Length = 420

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 33/125 (26%), Positives = 54/125 (42%), Gaps = 7/125 (5%)
 Frame = -3

Query: 129 EVNWNSFRVAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVD 188
           ++ W S ++A LE+Y      D  E      ++GS  + +Y  + E L        ++  
Sbjct: 382 DLTWESLKIALLERYGGHGDGDVYEQLTELKQEGS--VEDYITEFEYLIAQIPRLPEKQF 209

Query: 189 EPYMCKRFVRGLRADIEDSVRPLGIM----RFQAL-VEKATEVELM--KNRRMDRAGTGG 241
           + Y    F+ GL+++I   VR L  M    R + L V +A E E+         R    G
Sbjct: 208 QGY----FLHGLQSEIRGRVRTLATMGEMSRTKLLQVTRAVEKEVKGGNGSGFGRGPKNG 41

Query: 242 PMRSS 246
           P RS+
Sbjct: 40  PYRSN 26


>TC222094 
          Length = 984

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 20/65 (30%), Positives = 32/65 (48%)
 Frame = -2

Query: 103 LATYLLLGDAEYWWRGARGMMEANHVEVNWNSFRVAFLEKYFPDSARDERESQFLTLRQG 162
           L  + L G+A  W R  +G    N++   WN     FL+KYFP       ES+ +  + G
Sbjct: 614 LFCFSLAGEARTWLRSFKG----NNLRT-WNEXXEKFLKKYFP-------ESKTIXXKGG 471

Query: 163 SMTIP 167
           ++ +P
Sbjct: 470 NLILP 456


>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
          Length = 1144

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 8/121 (6%)
 Frame = -3

Query: 96  SEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSFRVAFLEKYFPDSARDERESQ 155
           ++  ++ L ++ L G+A+ W    +G    N ++ +W+     FL+KYFP+S   E ++ 
Sbjct: 695 ADAIRLSLLSFSLSGEAKRWLHSFKG----NSLK-SWDEVVEKFLKKYFPESKTAEGKAA 531

Query: 156 FLTLRQGSMTIPEYAAKLESLAKHFRFFRDQV--------DEPYMCKRFVRGLRADIEDS 207
             +  Q     P+     ESL++    FR  +         EP     F+  LR + +  
Sbjct: 530 ISSFHQ----FPD-----ESLSEALERFRGLLRKTPTHGFSEPIQLNIFIDELRPESKQL 378

Query: 208 V 208
           V
Sbjct: 377 V 375


>TC205429 weakly similar to UP|O22600 (O22600) Glycine-rich protein, partial
           (49%)
          Length = 611

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 16/54 (29%), Positives = 24/54 (43%)
 Frame = +3

Query: 224 TEVELMKNRRMDRAGTGGPMRSSPRSYQGKGKLQMKKPYQRPTGEGFTPGPYRP 277
           T +   K + + + G   P   +  S+QGKG+  +  P   PT    TP P  P
Sbjct: 213 TIISRTKKKDVKKLGATHPCMHACSSFQGKGRTPLPPPTPVPTPPPPTPPPVPP 374


>AW317150 
          Length = 315

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 2/43 (4%)
 Frame = -1

Query: 234 MDRAGTGGPMRSSPRSYQGKGKLQMK--KPYQRPTGEGFTPGP 274
           + R   GGP   +PR  +GKG    K  KP   PT  G   GP
Sbjct: 183 LGRGNGGGPFLKTPRGKKGKGAKGKKWGKPRGFPTPGG*KRGP 55


>TC206213 similar to UP|PMXA_MOUSE (Q62066) Paired mesoderm homeobox protein
           2A (Paired-like homeobox 2A) (PHOX2A homeodomain
           protein) (Aristaless homeobox protein homolog), partial
           (8%)
          Length = 930

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 35  RRAAEDARE-LHRLQREAALDQNRGLNDFRRQDP 67
           RR A D R  LHR+ R AAL Q  GL   R++ P
Sbjct: 205 RRGAGDRRPGLHRVVRRAALRQPAGLQALRQELP 306


>AW164264 homologue to GP|24210303|em SI:dZ12F11.3 (collagen type XI alpha-2)
           {Danio rerio}, partial (1%)
          Length = 294

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 240 GGPMRSSPRSYQGKGKLQMK----KPYQRPTGEGFTPGP 274
           GGP   +P   +GKG    K    + + RPTGE   PGP
Sbjct: 198 GGPFAKNPTGEKGKGPQGKKGGEPQGFPRPTGE--KPGP 88


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,230,778
Number of Sequences: 63676
Number of extensions: 100807
Number of successful extensions: 506
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of query: 282
length of database: 12,639,632
effective HSP length: 96
effective length of query: 186
effective length of database: 6,526,736
effective search space: 1213972896
effective search space used: 1213972896
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)