BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.3
(230 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207930 similar to UP|O49459 (O49459) Predicted protein, partia... 382 e-107
TC221471 similar to UP|O49459 (O49459) Predicted protein, partia... 222 1e-58
BG839502 similar to GP|2842493|emb| predicted protein {Arabidops... 162 9e-41
AW472375 153 5e-38
TC223298 similar to UP|Q9SS95 (Q9SS95) F4P13.14 protein, partial... 130 7e-31
BI470456 97 8e-21
TC207929 similar to UP|O49459 (O49459) Predicted protein, partia... 94 5e-20
BG839153 86 2e-17
TC209084 homologue to UP|O49459 (O49459) Predicted protein, part... 85 3e-17
TC211030 similar to UP|Q6NQK2 (Q6NQK2) At1g25580, partial (8%) 82 3e-16
TC218305 similar to UP|Q8LJS1 (Q8LJS1) No apical meristem-like p... 70 6e-13
TC221831 UP|Q8LJS1 (Q8LJS1) No apical meristem-like protein, com... 70 8e-13
TC226285 similar to UP|Q9FY93 (Q9FY93) NAM-like protein (AT5g131... 68 3e-12
TC226284 similar to UP|Q9FY93 (Q9FY93) NAM-like protein (AT5g131... 64 7e-11
TC226098 similar to UP|Q84TD6 (Q84TD6) At3g04070, partial (45%) 60 8e-10
TC215362 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, pa... 59 2e-09
TC229643 similar to GB|BAB09485.1|9758909|AB012246 NAM (no apica... 59 2e-09
TC215363 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, pa... 57 5e-09
TC212360 similar to UP|O81790 (O81790) NAM / CUC2-like protein, ... 57 7e-09
TC232291 similar to UP|O81790 (O81790) NAM / CUC2-like protein, ... 57 7e-09
>TC207930 similar to UP|O49459 (O49459) Predicted protein, partial (62%)
Length = 1474
Score = 382 bits (982), Expect = e-107
Identities = 188/237 (79%), Positives = 204/237 (85%), Gaps = 7/237 (2%)
Frame = +3
Query: 1 MKWCNDSDKEKGNKYLI-TPTNTPKAI-INLTEGIHTIKCPSCSHNTDVRDQGGIH---G 55
M WCNDSD+++ + T T TP I LTE I TI CPSC HN + +DQGGIH G
Sbjct: 87 MTWCNDSDEDRVIESTTPTITITPNTDGIKLTEEIRTITCPSCGHNIEFKDQGGIHDLPG 266
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LPAGVKFDPNDQEILEHLEAKV SD CKLHPLID+FIPTL+G+NGICYTHPEKLPGVSKD
Sbjct: 267 LPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKD 446
Query: 116 GQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVF-AGGGAVKGFKKIMV 174
GQ+RHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVF A GGAVKGFKKI+V
Sbjct: 447 GQIRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAAAGGAVKGFKKILV 626
Query: 175 LYTNFGRQRKPEKTNWVMHQYHLGSNEEEQDGELVVSKVFYQTQPRQC-GTSIIRDP 230
LYTN+GRQ+KPEKT WVMHQYHLG+ EEE+DGELVVSKVFYQTQPRQC II+DP
Sbjct: 627 LYTNYGRQKKPEKTYWVMHQYHLGNTEEEKDGELVVSKVFYQTQPRQCVNPIIIKDP 797
>TC221471 similar to UP|O49459 (O49459) Predicted protein, partial (36%)
Length = 757
Score = 222 bits (565), Expect = 1e-58
Identities = 102/122 (83%), Positives = 113/122 (92%)
Frame = +2
Query: 106 PEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGA 165
P ++ GV KDGQ+RHFFHRPSKAYTTGTRKRRKVHTD EGSETRWHKTGKTR VF GG A
Sbjct: 80 PGRITGVRKDGQIRHFFHRPSKAYTTGTRKRRKVHTDKEGSETRWHKTGKTRPVFVGG-A 256
Query: 166 VKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGSNEEEQDGELVVSKVFYQTQPRQCGTS 225
VKGFKKI+VLYTN+GRQ+KPEKTNWVMHQYHLG++EEE+DGELVVSK+FYQTQPRQCG +
Sbjct: 257 VKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGTSEEEKDGELVVSKIFYQTQPRQCGNN 436
Query: 226 II 227
I
Sbjct: 437 SI 442
>BG839502 similar to GP|2842493|emb| predicted protein {Arabidopsis
thaliana}, partial (25%)
Length = 593
Score = 162 bits (411), Expect = 9e-41
Identities = 81/125 (64%), Positives = 91/125 (72%), Gaps = 13/125 (10%)
Frame = -1
Query: 1 MKWCNDSDKEKGNKYLITPTNTPKAIINLTEGIH----------TIKCPSCSHNTDVRDQ 50
M WCNDSD+E+G L+ P TP + N T H TI CPSC HN + +DQ
Sbjct: 512 MTWCNDSDEERGIDQLVAPAITPTSTNNTTVLTHDHHRKPTEIRTITCPSCGHNIEFQDQ 333
Query: 51 GGIH---GLPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPE 107
GI+ GLPAGVKFDPNDQEILEHLEAKV SDV KLHPLID+FIPTL+G+NGICYTHPE
Sbjct: 332 TGINDLPGLPAGVKFDPNDQEILEHLEAKVFSDVPKLHPLIDEFIPTLEGENGICYTHPE 153
Query: 108 KLPGV 112
KLPGV
Sbjct: 152 KLPGV 138
>AW472375
Length = 443
Score = 153 bits (387), Expect = 5e-38
Identities = 75/129 (58%), Positives = 90/129 (69%)
Frame = +3
Query: 101 ICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVF 160
ICYTHP+ LPGV +DG HFFHR AY TGTRKRRK+ D G + RWHKTG+T+ V
Sbjct: 3 ICYTHPQNLPGVKQDGSASHFFHRAINAYNTGTRKRRKILGQDFG-DVRWHKTGRTKPVV 179
Query: 161 AGGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGSNEEEQDGELVVSKVFYQTQPR 220
G KG KKIMVLY + R + EKTNWVMHQYHLG+ E+E+DGE ++SKVFYQ Q
Sbjct: 180 FNG-IQKGCKKIMVLYVSNVRGGRAEKTNWVMHQYHLGTEEDEKDGEYIISKVFYQQQQV 356
Query: 221 QCGTSIIRD 229
+ G +D
Sbjct: 357 KLGDKDDKD 383
>TC223298 similar to UP|Q9SS95 (Q9SS95) F4P13.14 protein, partial (21%)
Length = 438
Score = 130 bits (326), Expect = 7e-31
Identities = 65/106 (61%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +2
Query: 115 DGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSE--TRWHKTGKTRAVFAGGGAVKGFKKI 172
DG HFFH+ AY TG RKRRK+H D +E RWHKTG+T+AV G KGFKKI
Sbjct: 26 DGSSVHFFHKTVNAYATGPRKRRKIHHQDGMTEEHVRWHKTGRTKAVIEDG-VHKGFKKI 202
Query: 173 MVLYTNFGRQRKPEKTNWVMHQYHLGSNEEEQDGELVVSKVFYQTQ 218
MVLY + KP KTNWVMHQYHLGS E+E+D E VVSK+FYQ Q
Sbjct: 203 MVLYIRSKKGSKPYKTNWVMHQYHLGSEEDEKDDEYVVSKIFYQRQ 340
>BI470456
Length = 421
Score = 96.7 bits (239), Expect = 8e-21
Identities = 46/77 (59%), Positives = 56/77 (71%)
Frame = +1
Query: 147 ETRWHKTGKTRAVFAGGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGSNEEEQDG 206
+ RWHKTG+T+ V G KG KKIMVLY + R K EKTNWVMHQYHLG+ E+E+DG
Sbjct: 13 DVRWHKTGRTKPVVLSG-VQKGCKKIMVLYVSNVRGGKAEKTNWVMHQYHLGTEEDEKDG 189
Query: 207 ELVVSKVFYQTQPRQCG 223
E ++SKVFYQ Q + G
Sbjct: 190 EYIISKVFYQQQQVKLG 240
>TC207929 similar to UP|O49459 (O49459) Predicted protein, partial (16%)
Length = 432
Score = 94.0 bits (232), Expect = 5e-20
Identities = 50/87 (57%), Positives = 56/87 (63%), Gaps = 8/87 (9%)
Frame = +2
Query: 1 MKWCNDSDKEK-----GNKYLITPTNTPKAIINLTEGIHTIKCPSCSHNTDVRDQGGIH- 54
M WCNDSD+ + + ITP K LT+ I T CPSC HN +D+GGIH
Sbjct: 179 MTWCNDSDENRVIESITPRITITPNTDDK---KLTQEIRTTACPSCGHNIAFKDKGGIHD 349
Query: 55 --GLPAGVKFDPNDQEILEHLEAKVVS 79
GLPAGVKFDPNDQEILEHLEAKV S
Sbjct: 350 LPGLPAGVKFDPNDQEILEHLEAKVAS 430
>BG839153
Length = 715
Score = 85.5 bits (210), Expect = 2e-17
Identities = 39/68 (57%), Positives = 50/68 (73%)
Frame = +2
Query: 37 KCPSCSHNTDVRDQGGIHGLPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQ 96
+CP C H + + GLPA VKFDP DQE++EHLEAKV + K HPLID+FIPT++
Sbjct: 518 QCPGCGHKFEGKPDW--LGLPAEVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIE 691
Query: 97 GDNGICYT 104
G++GICYT
Sbjct: 692 GEDGICYT 715
>TC209084 homologue to UP|O49459 (O49459) Predicted protein, partial (12%)
Length = 972
Score = 84.7 bits (208), Expect = 3e-17
Identities = 38/42 (90%), Positives = 39/42 (92%)
Frame = +3
Query: 186 EKTNWVMHQYHLGSNEEEQDGELVVSKVFYQTQPRQCGTSII 227
EKTNWVMHQYHLGS EEE+DGELVVSKVFYQTQPRQCG II
Sbjct: 6 EKTNWVMHQYHLGSTEEEKDGELVVSKVFYQTQPRQCGNPII 131
>TC211030 similar to UP|Q6NQK2 (Q6NQK2) At1g25580, partial (8%)
Length = 856
Score = 81.6 bits (200), Expect = 3e-16
Identities = 41/68 (60%), Positives = 49/68 (71%), Gaps = 1/68 (1%)
Frame = +1
Query: 152 KTGKTRAVFAGGGAVKGFKKIMVLYTNFGRQ-RKPEKTNWVMHQYHLGSNEEEQDGELVV 210
KTGKT+A+ G KGFKKIMV+Y KP K+NWVMHQYHLG+ E+E++ E VV
Sbjct: 4 KTGKTKAIIEDG-VHKGFKKIMVIYIRSSENGSKPYKSNWVMHQYHLGTEEDEKEAEYVV 180
Query: 211 SKVFYQTQ 218
SKVFYQ Q
Sbjct: 181 SKVFYQQQ 204
>TC218305 similar to UP|Q8LJS1 (Q8LJS1) No apical meristem-like protein,
partial (58%)
Length = 935
Score = 70.5 bits (171), Expect = 6e-13
Identities = 49/143 (34%), Positives = 66/143 (45%), Gaps = 1/143 (0%)
Frame = +3
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E++ H K V D +F G+ + + P LP +K
Sbjct: 192 LPPGFRFHPTDEELISHYLYKKVIDT--------KFCARAIGEVDLNKSEPWDLPWKAKM 347
Query: 116 GQVR-HFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVKGFKKIMV 174
G+ +FF + Y TG R R W TGK + +F G V G KK +V
Sbjct: 348 GEKEWYFFCVRDRKYPTGLRTNRATEAG------YWKATGKDKEIFRGKSLV-GMKKTLV 506
Query: 175 LYTNFGRQRKPEKTNWVMHQYHL 197
Y GR K EK+NWVMH+Y L
Sbjct: 507 FYR--GRAPKGEKSNWVMHEYRL 569
>TC221831 UP|Q8LJS1 (Q8LJS1) No apical meristem-like protein, complete
Length = 1216
Score = 70.1 bits (170), Expect = 8e-13
Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Frame = +2
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E++ H + V+D F G+ + + P LP +K
Sbjct: 170 LPPGFRFHPTDEELISHYLYRKVTDT--------NFSARAIGEVDLNRSEPWDLPWKAKM 325
Query: 116 GQVR-HFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVKGFKKIMV 174
G+ +FF + Y TG R R + W TGK + +F G V G KK +V
Sbjct: 326 GEKEWYFFCVRDRKYPTGLRTNRATESG------YWKATGKDKEIFRGKSLV-GMKKTLV 484
Query: 175 LYTNFGRQRKPEKTNWVMHQYHLGSN------EEEQDGELVVSKVFYQT 217
Y GR K EKT+WVMH+Y L + E V+ +VF ++
Sbjct: 485 FYK--GRAPKGEKTDWVMHEYRLDGKFSFHNLPKTAKNEWVICRVFQKS 625
>TC226285 similar to UP|Q9FY93 (Q9FY93) NAM-like protein
(AT5g13180/T19L5_140), partial (59%)
Length = 1332
Score = 68.2 bits (165), Expect = 3e-12
Identities = 59/194 (30%), Positives = 90/194 (45%), Gaps = 3/194 (1%)
Frame = +2
Query: 19 PTNTPKAIINLTEGIHTIKCPSCSHNTDVRDQGGIHGLPAGVKFDPNDQE-ILEHLEAKV 77
P++T K II++ E ++ +K N ++R LP G +F P D+E +L++L+ KV
Sbjct: 407 PSSTQKYIISM-EKVNFVK------NGELR-------LPPGFRFHPTDEELVLQYLKRKV 544
Query: 78 VSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRR 137
S C PL IP L +C + P LPG + Q R+FF Y G R R
Sbjct: 545 FS--C---PLPASIIPELH----VCKSDPWDLPGDLE--QERYFFSTKVAKYPNGNRSNR 691
Query: 138 KVHTDDEGSETRWHKTGKTRAVFA--GGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQY 195
++ W TG + + G V G KK +V Y G+ +T+W+MH+Y
Sbjct: 692 ATNSG------YWKATGLDKQIVTSKGNNQVVGMKKTLVFYR--GKPPNGSRTDWIMHEY 847
Query: 196 HLGSNEEEQDGELV 209
L N + +V
Sbjct: 848 RLILNASQSQSHVV 889
>TC226284 similar to UP|Q9FY93 (Q9FY93) NAM-like protein
(AT5g13180/T19L5_140), partial (59%)
Length = 1601
Score = 63.5 bits (153), Expect = 7e-11
Identities = 47/144 (32%), Positives = 68/144 (46%), Gaps = 2/144 (1%)
Frame = +2
Query: 56 LPAGVKFDPNDQE-ILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSK 114
LP G +F P D+E +L++L+ KV S C PL IP + +C + P LPG +
Sbjct: 215 LPPGFRFHPTDEELVLQYLKRKVFS--C---PLPASIIPEVD----VCKSDPWDLPGDLE 367
Query: 115 DGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAG-GGAVKGFKKIM 173
Q R+FF Y G R R ++ W TG + + G V G KK +
Sbjct: 368 --QERYFFSTKEAKYPNGNRSNRATNSG------YWKATGLDKQIVTSKGNQVVGMKKTL 523
Query: 174 VLYTNFGRQRKPEKTNWVMHQYHL 197
V Y G+ +T+W+MH+Y L
Sbjct: 524 VFYR--GKPPHGSRTDWIMHEYRL 589
>TC226098 similar to UP|Q84TD6 (Q84TD6) At3g04070, partial (45%)
Length = 1562
Score = 60.1 bits (144), Expect = 8e-10
Identities = 47/152 (30%), Positives = 67/152 (43%), Gaps = 5/152 (3%)
Frame = +1
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E++ H +K V+ + PL I + I P LP +
Sbjct: 169 LPPGFRFHPTDEELILHYLSKKVASI----PLPVSIIAEVD----IYKLDPWDLPAKATF 324
Query: 116 GQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAG--GGAVK--GFK 170
G+ +F P + Y G R R + W TG + + GGA + G K
Sbjct: 325 GEKEWYFFSPRDRKYPNGARPNRAA------ASGYWKATGTDKTIVTSLQGGAQESVGVK 486
Query: 171 KIMVLYTNFGRQRKPEKTNWVMHQYHLGSNEE 202
K +V Y GR K KTNW+MH+Y L N +
Sbjct: 487 KALVFYK--GRPPKGVKTNWIMHEYRLVDNNK 576
>TC215362 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, partial (63%)
Length = 1565
Score = 58.9 bits (141), Expect = 2e-09
Identities = 42/143 (29%), Positives = 63/143 (43%), Gaps = 1/143 (0%)
Frame = +3
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P DQE++ H + C P+ I + + P LPG++
Sbjct: 150 LPPGFRFHPTDQELVLHYLCRK----CASQPIAVPIIAEID----LYKYDPWDLPGLASY 305
Query: 116 GQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVKGFKKIMV 174
G+ +F P + Y G+R R T W TG + + G G KK +V
Sbjct: 306 GEKEWYFFSPRDRKYPNGSRPNRAAGTG------YWKATGADKPI--GHPKPVGIKKALV 461
Query: 175 LYTNFGRQRKPEKTNWVMHQYHL 197
Y G+ K +K+NW+MH+Y L
Sbjct: 462 FYA--GKAPKGDKSNWIMHEYRL 524
>TC229643 similar to GB|BAB09485.1|9758909|AB012246 NAM (no apical
meristem)-like protein {Arabidopsis thaliana;} , partial
(41%)
Length = 1434
Score = 58.9 bits (141), Expect = 2e-09
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +3
Query: 91 FIPTLQGDNGICYTHPEKLPGVSKDGQVR-HFFHRPSKAYTTGTRKRRKVHTDDEGSETR 149
F T G+ P LP +K G+ +FF + + Y TG R R +
Sbjct: 27 FSATAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSG------Y 188
Query: 150 WHKTGKTRAVFAGGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHL 197
W TGK + +F G + G KK +V Y GR K EKTNWVMH++ L
Sbjct: 189 WKATGKDKEIFKGKNNLVGMKKTLVFYR--GRAPKGEKTNWVMHEFRL 326
>TC215363 homologue to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, partial (64%)
Length = 1464
Score = 57.4 bits (137), Expect = 5e-09
Identities = 41/143 (28%), Positives = 63/143 (43%), Gaps = 1/143 (0%)
Frame = +1
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E++ H + C P+ I + + P LPG++
Sbjct: 79 LPPGFRFHPTDEELVLHYLCRK----CASQPIAVPIIAEID----LYKYDPWDLPGLATY 234
Query: 116 GQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVKGFKKIMV 174
G+ +F P + Y G+R R T W TG + + G G KK +V
Sbjct: 235 GEKEWYFFSPRDRKYPNGSRPNRAAGTG------YWKATGADKPI--GQPKPVGIKKALV 390
Query: 175 LYTNFGRQRKPEKTNWVMHQYHL 197
Y G+ K +K+NW+MH+Y L
Sbjct: 391 FYA--GKAPKGDKSNWIMHEYRL 453
>TC212360 similar to UP|O81790 (O81790) NAM / CUC2-like protein, partial
(26%)
Length = 575
Score = 57.0 bits (136), Expect = 7e-09
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 7/150 (4%)
Frame = +2
Query: 53 IHGLPAGVKFDPNDQEILEH-LEAKV---VSDVCKLHPLIDQFIPTLQGDNGICYTHPEK 108
++ LP G +F P D+E++++ L +K+ DV + + +C P
Sbjct: 149 LNTLPLGFRFRPTDEELIDYYLRSKINGNSDDVWVIREI------------DVCKWEPWD 292
Query: 109 LPGVS--KDGQVRHFFHRPS-KAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGA 165
LP +S ++ FF P + Y G R R + W TGK R + +G
Sbjct: 293 LPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATN------HGYWKATGKDRKIKSGSTL 454
Query: 166 VKGFKKIMVLYTNFGRQRKPEKTNWVMHQY 195
+ G KK +V YT GR K ++TNWVMH+Y
Sbjct: 455 I-GMKKTLVFYT--GRAPKGKRTNWVMHEY 535
>TC232291 similar to UP|O81790 (O81790) NAM / CUC2-like protein, partial
(20%)
Length = 716
Score = 57.0 bits (136), Expect = 7e-09
Identities = 47/154 (30%), Positives = 70/154 (44%), Gaps = 5/154 (3%)
Frame = +1
Query: 56 LPAGVKFDPNDQEILEH-LEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPG--- 111
+P G +F P D+E++++ L+ K+++D +H IP + +C P +PG
Sbjct: 181 MPVGFRFRPTDEELVDYYLKHKLLADDFPVH-----IIPEID----LCKVEPWDVPGRSV 333
Query: 112 VSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAV-FAGGGAVKGFK 170
+ D FF Y R R T G W TG R V G V G K
Sbjct: 334 IKSDDPEWFFFSPVDYKYLKSKRFNR---TTKRGY---WKTTGNDRNVKIPGTSNVIGTK 495
Query: 171 KIMVLYTNFGRQRKPEKTNWVMHQYHLGSNEEEQ 204
K +V + GR + KTNWV+H+YH ++ E Q
Sbjct: 496 KTLVFHE--GRGPRGVKTNWVIHEYHAVTSHESQ 591
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,863,046
Number of Sequences: 63676
Number of extensions: 146771
Number of successful extensions: 857
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of query: 230
length of database: 12,639,632
effective HSP length: 94
effective length of query: 136
effective length of database: 6,654,088
effective search space: 904955968
effective search space used: 904955968
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0336.3