BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.16
(135 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209540 weakly similar to GB|AAQ89625.1|37202020|BT010603 At4g2... 244 9e-66
BE331164 similar to GP|3550549|emb| cytosolic pyruvate orthophos... 30 0.35
TC207508 weakly similar to UP|RL1_COXBU (Q83ET3) 50S ribosomal p... 30 0.35
TC230694 30 0.45
BG839472 30 0.45
TC205429 weakly similar to UP|O22600 (O22600) Glycine-rich prote... 29 0.59
TC207526 similar to GB|AAF76443.1|8569098|F2J10 ESTs gb|F20048, ... 29 0.77
TC234465 similar to GB|AAA91085.1|561756|MUSHDH05 Huntington dis... 28 1.3
TC220190 weakly similar to UP|Q84630 (Q84630) A316R protein, par... 28 1.3
TC219525 similar to UP|Q9LV64 (Q9LV64) Gb|AAD28645.1, partial (27%) 28 1.3
BM525944 28 1.7
TC220681 similar to UP|Q6Z2V7 (Q6Z2V7) NHL repeat-containing pro... 28 1.7
BF068887 homologue to PIR|JC5876|JC58 early light-inducible prot... 28 1.7
TC214884 similar to UP|P93169 (P93169) Early light-induced prote... 28 1.7
BU550192 homologue to PIR|JC5876|JC5 early light-inducible prote... 28 1.7
TC214887 homologue to UP|P93169 (P93169) Early light-induced pro... 27 2.2
TC218112 similar to UP|Q9ST62 (Q9ST62) External rotenone-insensi... 27 2.2
AI959933 weakly similar to GP|27461187|gb type IV collagen alpha... 27 2.2
TC230112 similar to GB|AAS78924.1|45862324|AY572782 CDC48-intera... 27 2.2
TC219503 similar to UP|Q705F3 (Q705F3) E2 protein, partial (4%) 27 2.2
>TC209540 weakly similar to GB|AAQ89625.1|37202020|BT010603 At4g21720
{Arabidopsis thaliana;} , partial (86%)
Length = 693
Score = 244 bits (623), Expect = 9e-66
Identities = 109/139 (78%), Positives = 122/139 (87%), Gaps = 4/139 (2%)
Frame = +1
Query: 1 MMPQQWASPCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKDPVLKD 60
M+PQQWASPCGNQCT+KYAALT+IPWRVFCKKGC+SDGETWEECLE+C+ ICYKDPVLKD
Sbjct: 22 MIPQQWASPCGNQCTNKYAALTKIPWRVFCKKGCDSDGETWEECLEDCNQICYKDPVLKD 201
Query: 61 QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKICPNRPL----KPAPVQKP 116
Q+WSAYIDRSPGAASYSEECFHACVSGCGYKFEV+ E+A+K+ PNR L KP P KP
Sbjct: 202 QQWSAYIDRSPGAASYSEECFHACVSGCGYKFEVKPEEADKVSPNRQLKPETKPKPQPKP 381
Query: 117 KPQPVEQLDPPEDMHGISA 135
KPQPV +DPP D+ SA
Sbjct: 382 KPQPVCPIDPPSDIPDTSA 438
>BE331164 similar to GP|3550549|emb| cytosolic pyruvate orthophosphate
dikinase {Oryza sativa (indica cultivar-group)}, partial
(4%)
Length = 220
Score = 30.0 bits (66), Expect = 0.35
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 109 KPAPVQKPKPQPVEQLDPPE 128
KP+ VQ KPQP+ +L PP+
Sbjct: 107 KPSAVQTVKPQPINELTPPQ 166
>TC207508 weakly similar to UP|RL1_COXBU (Q83ET3) 50S ribosomal protein L1,
partial (35%)
Length = 983
Score = 30.0 bits (66), Expect = 0.35
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 9/55 (16%)
Frame = +1
Query: 81 FHACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQ------KPKPQPVE---QLDP 126
FH+ +S ++ ++ P RP +P P+Q KPKP P E +L+P
Sbjct: 88 FHSPISLSSHRSLCSSSESNSNPPRRPFEPIPIQPVSYPVKPKPPPPEPQPELEP 252
>TC230694
Length = 709
Score = 29.6 bits (65), Expect = 0.45
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +3
Query: 13 QCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEEC 48
QC ++ L +PWR K + + + WEE L C
Sbjct: 465 QCDGHWSPLVSLPWRA*NKIVSSWENQVWEEILVHC 572
>BG839472
Length = 808
Score = 29.6 bits (65), Expect = 0.45
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = -2
Query: 13 QCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEEC 48
QC ++ L +PWR K + + + WEE L C
Sbjct: 417 QCDGHWSPLVSLPWRA*NKIVSSWENQVWEEILVHC 310
>TC205429 weakly similar to UP|O22600 (O22600) Glycine-rich protein, partial
(49%)
Length = 611
Score = 29.3 bits (64), Expect = 0.59
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +3
Query: 102 ICPNRPLKPAPVQKPKPQPVEQLDPPE 128
+ P RP +P P PKP P+ PP+
Sbjct: 393 VVPPRPPRPPPSPPPKPPPIPAPTPPK 473
>TC207526 similar to GB|AAF76443.1|8569098|F2J10 ESTs gb|F20048, gb|F20049
come from this gene. {Arabidopsis thaliana;} , partial
(58%)
Length = 1010
Score = 28.9 bits (63), Expect = 0.77
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -3
Query: 27 RVFCKKGCNSDGETWEECLEECDHICYK 54
+V +KGCN+ + W + EEC C K
Sbjct: 723 KVKSRKGCNNYEDQWPKSQEECSSNCQK 640
>TC234465 similar to GB|AAA91085.1|561756|MUSHDH05 Huntington disease protein
{Mus musculus;} , partial (12%)
Length = 545
Score = 28.1 bits (61), Expect = 1.3
Identities = 14/39 (35%), Positives = 18/39 (45%)
Frame = +3
Query: 94 VQQEKAEKICPNRPLKPAPVQKPKPQPVEQLDPPEDMHG 132
+QQ P RPL P V +P PV + PP+ G
Sbjct: 165 MQQMPPPPQAPPRPLPPPSVMASQPPPVWRPPPPQQQGG 281
>TC220190 weakly similar to UP|Q84630 (Q84630) A316R protein, partial (11%)
Length = 602
Score = 28.1 bits (61), Expect = 1.3
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = -3
Query: 104 PNRPLKPAPVQKPKPQPVEQLDPPEDMHGI 133
P P KP P+ P P P + P D+ G+
Sbjct: 258 PKPPTKPKPIPAPHPMPAPKPGPNTDV*GL 169
>TC219525 similar to UP|Q9LV64 (Q9LV64) Gb|AAD28645.1, partial (27%)
Length = 770
Score = 28.1 bits (61), Expect = 1.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 91 KFEVQQEKAEKI------CPNRPLKPAPVQKPKPQPVEQLDPPEDMHGIS 134
K Q EK EK P +P+Q+PKP+PV+ ED++ IS
Sbjct: 406 KVRCQNEKDEKKQNWVSNVKELPSPTSPIQRPKPKPVD-----EDLYKIS 540
>BM525944
Length = 358
Score = 27.7 bits (60), Expect = 1.7
Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 5/51 (9%)
Frame = -3
Query: 2 MPQQWASPC--GNQCTHKYAALTQIPWRVFCK---KGCNSDGETWEECLEE 47
MPQ+ S C G CTH A T+ WR + K C+ + + C E
Sbjct: 176 MPQERLSSCSIGKDCTHLSAT*TEKRWRKHHREETKACSKNHDVRVPCRSE 24
>TC220681 similar to UP|Q6Z2V7 (Q6Z2V7) NHL repeat-containing protein-like,
partial (27%)
Length = 703
Score = 27.7 bits (60), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 103 CP-NRPLKPAPVQKPKPQPVEQLDP 126
CP N L P P+ +PKP+P + DP
Sbjct: 70 CPSNLILNPLPLPRPKPKPKPRSDP 144
>BF068887 homologue to PIR|JC5876|JC58 early light-inducible protein
precursor - soybean, partial (48%)
Length = 413
Score = 27.7 bits (60), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 94 VQQEKAEKICPNRPLKPAPVQKPKPQPVEQLDP 126
+Q+E+ + P P+ P P +PKPQPV P
Sbjct: 126 LQEEQPSE--PATPVTPPPSVEPKPQPVSAPSP 218
>TC214884 similar to UP|P93169 (P93169) Early light-induced protein, partial
(98%)
Length = 2021
Score = 27.7 bits (60), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 94 VQQEKAEKICPNRPLKPAPVQKPKPQPVEQLDP 126
+Q+E+ + P P+ P P +PKPQPV P
Sbjct: 1142 LQEEQPSE--PATPVTPPPSVEPKPQPVSAPSP 1234
>BU550192 homologue to PIR|JC5876|JC5 early light-inducible protein precursor
- soybean, partial (76%)
Length = 657
Score = 27.7 bits (60), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 94 VQQEKAEKICPNRPLKPAPVQKPKPQPVEQLDP 126
+Q+E+ + P P+ P P +PKPQPV P
Sbjct: 485 LQEEQPSE--PATPVTPPPSVEPKPQPVSAPSP 393
>TC214887 homologue to UP|P93169 (P93169) Early light-induced protein,
partial (42%)
Length = 485
Score = 27.3 bits (59), Expect = 2.2
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = +1
Query: 104 PNRPLKPAPVQKPKPQPVEQLDP 126
P P+ P P +PKPQPV P
Sbjct: 301 PATPVTPPPSVEPKPQPVSAPSP 369
>TC218112 similar to UP|Q9ST62 (Q9ST62) External rotenone-insensitive NADPH
dehydrogenase, partial (50%)
Length = 1106
Score = 27.3 bits (59), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 94 VQQEKAEKIC-PNRPLKPAPVQKPKPQPVEQLDP 126
+Q KA + C P +P +Q P P PVEQ+ P
Sbjct: 804 IQNTKAIECCDPWKPSLQEVLQLPAPHPVEQIAP 703
>AI959933 weakly similar to GP|27461187|gb type IV collagen alpha 5 chain
{Canis familiaris}, partial (2%)
Length = 380
Score = 27.3 bits (59), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +3
Query: 104 PNRPLKPAPVQKPKPQPVEQLDPPEDMHG 132
PN P KPA +K KP + PP+ M G
Sbjct: 165 PNPPQKPAREKKGKPGGAQGGGPPQKMGG 251
>TC230112 similar to GB|AAS78924.1|45862324|AY572782 CDC48-interacting
UBX-domain protein {Arabidopsis thaliana;} , partial
(69%)
Length = 1321
Score = 27.3 bits (59), Expect = 2.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 105 NRPLKPAPVQKPKPQPVEQLDPPEDM 130
N PL+P P+ P P+ ++PP +
Sbjct: 13 NPPLQPHPIPNPHPRKRTHIEPPRSL 90
>TC219503 similar to UP|Q705F3 (Q705F3) E2 protein, partial (4%)
Length = 477
Score = 27.3 bits (59), Expect = 2.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 98 KAEKICPNRPLKPAPVQKPKPQPVEQLD 125
++ K+CPN + A P PQP Q D
Sbjct: 167 RSPKLCPNPTSRTATPPPPPPQPPSQTD 250
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.134 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,782,884
Number of Sequences: 63676
Number of extensions: 195546
Number of successful extensions: 1584
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of query: 135
length of database: 12,639,632
effective HSP length: 87
effective length of query: 48
effective length of database: 7,099,820
effective search space: 340791360
effective search space used: 340791360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0336.16