BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335b.2
(106 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC213842 weakly similar to UP|Q9LH40 (Q9LH40) Gb|AAF18723.1, par... 118 4e-28
TC205169 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid ... 32 0.047
BQ742483 similar to GP|21780187|gb| cp10-like protein {Gossypium... 30 0.14
TC203969 similar to UP|Q7XYW5 (Q7XYW5) Seed specific protein Bn1... 30 0.18
TC203996 similar to UP|Q7XYW5 (Q7XYW5) Seed specific protein Bn1... 30 0.18
TC203310 similar to UP|Q84VW1 (Q84VW1) At3g03150, partial (29%) 28 0.52
TC226159 UP|Q9SP01 (Q9SP01) Indole-3-acetic acid induced protein... 28 0.69
TC203915 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid ... 27 1.2
BQ299355 27 1.5
BU964653 similar to GP|15215721|gb| AT3g62830/F26K9_260 {Arabido... 27 1.5
TC224343 27 2.0
TC205170 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid ... 27 2.0
TC205426 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, part... 27 2.0
TC215471 homologue to UP|IFE3_ARATH (Q9FK59) Eukaryotic translat... 26 2.6
TC232992 weakly similar to UP|Q8GT20 (Q8GT20) Benzoyl coenzyme A... 26 3.4
TC204678 similar to UP|Q94EJ6 (Q94EJ6) AT4g18030/T6K21_210, part... 26 3.4
TC205427 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, part... 25 4.4
TC229522 25 4.4
TC229384 similar to UP|Q9VAQ0 (Q9VAQ0) CG1401-PA, partial (3%) 25 4.4
BM893519 similar to GP|22475197|gb homeodomain protein GhHOX2 {G... 25 5.8
>TC213842 weakly similar to UP|Q9LH40 (Q9LH40) Gb|AAF18723.1, partial (59%)
Length = 428
Score = 118 bits (296), Expect = 4e-28
Identities = 67/102 (65%), Positives = 77/102 (74%), Gaps = 3/102 (2%)
Frame = +3
Query: 1 MARGGITKSTLLIL---RGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSA 57
M RGGITK++LL+L RGA+RA++ + KFSGT A AESS GV K GK EDS A
Sbjct: 96 MVRGGITKASLLLLGSCRGAKRAKSGLSKFSGT---AQPAESSG-GVSKS-GGKIEDS-A 257
Query: 58 IWVPHPRTGIYYPKGHECVMEDVPEGAARFTQTYWFRNDDGV 99
W+PHPRTGIY+PKGHE VM+DVPE AAR QTYWFRN DGV
Sbjct: 258 FWIPHPRTGIYFPKGHEWVMDDVPEDAARLNQTYWFRNVDGV 383
>TC205169 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid induced
protein ARG2, partial (80%)
Length = 743
Score = 32.0 bits (71), Expect = 0.047
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 31 TAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGIYYPK 71
T AA+ S + G K++ G E S WVP P TG Y P+
Sbjct: 248 TRGGAASISGKSGEDKVLGGGAEKVS--WVPDPVTGYYKPE 364
>BQ742483 similar to GP|21780187|gb| cp10-like protein {Gossypium hirsutum},
partial (5%)
Length = 406
Score = 30.4 bits (67), Expect = 0.14
Identities = 19/63 (30%), Positives = 24/63 (37%), Gaps = 5/63 (7%)
Frame = +1
Query: 44 VPKIISGKTEDSSAIWVPHPRTGIYYPKG-----HECVMEDVPEGAARFTQTYWFRNDDG 98
VP + S W PHP+TG++ P G + D E A WFR
Sbjct: 196 VPDDVIQAATQSGKYWAPHPQTGVFGPPGGGDQTASAIHSDALEEKA------WFRPTGL 357
Query: 99 VGC 101
GC
Sbjct: 358 RGC 366
>TC203969 similar to UP|Q7XYW5 (Q7XYW5) Seed specific protein Bn15D1B,
partial (13%)
Length = 777
Score = 30.0 bits (66), Expect = 0.18
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = +2
Query: 44 VPKIISGKTEDSSAIWVPHPRTGIYYPKG 72
VP + S W PHP+TG++ P G
Sbjct: 233 VPDDVIQAATQSGKYWAPHPQTGVFGPPG 319
>TC203996 similar to UP|Q7XYW5 (Q7XYW5) Seed specific protein Bn15D1B,
partial (47%)
Length = 691
Score = 30.0 bits (66), Expect = 0.18
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = +2
Query: 44 VPKIISGKTEDSSAIWVPHPRTGIYYPKG 72
VP + S W PHP+TG++ P G
Sbjct: 224 VPDDVIQAATQSGKYWAPHPQTGVFGPPG 310
>TC203310 similar to UP|Q84VW1 (Q84VW1) At3g03150, partial (29%)
Length = 920
Score = 28.5 bits (62), Expect = 0.52
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 55 SSAIWVPHPRTGIYYPKG 72
S W PHP+TG++ P G
Sbjct: 374 SGKYWAPHPQTGVFGPPG 427
>TC226159 UP|Q9SP01 (Q9SP01) Indole-3-acetic acid induced protein ARG-2
homolog, complete
Length = 611
Score = 28.1 bits (61), Expect = 0.69
Identities = 15/51 (29%), Positives = 24/51 (46%), Gaps = 6/51 (11%)
Frame = +3
Query: 27 FSGTTAKAAAAESSEEGVPKIISGKTEDSSAI------WVPHPRTGIYYPK 71
FS T + ++S+ G I+ K+ + + WVP P TG Y P+
Sbjct: 126 FSNTLTRRGYSQSATRGGVASIAPKSGEDKGVSSYKVSWVPDPVTGYYKPE 278
>TC203915 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid induced
protein ARG2, partial (68%)
Length = 862
Score = 27.3 bits (59), Expect = 1.2
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 11/49 (22%)
Frame = +3
Query: 34 AAAAESSEEGVPKIISGKT-----EDSSAI------WVPHPRTGIYYPK 71
A A++S+ +G +SGK ED+ + WVP P TG Y P+
Sbjct: 429 AVASQSATKGGVASMSGKMAPKSGEDNKGVSTYKVSWVPDPVTGYYKPE 575
>BQ299355
Length = 422
Score = 26.9 bits (58), Expect = 1.5
Identities = 9/21 (42%), Positives = 14/21 (65%)
Frame = +3
Query: 55 SSAIWVPHPRTGIYYPKGHEC 75
SS +W+PH RT + P+ +C
Sbjct: 132 SSRLWLPHARTPHHRPRRRQC 194
>BU964653 similar to GP|15215721|gb| AT3g62830/F26K9_260 {Arabidopsis
thaliana}, partial (27%)
Length = 212
Score = 26.9 bits (58), Expect = 1.5
Identities = 15/52 (28%), Positives = 20/52 (37%)
Frame = -1
Query: 54 DSSAIWVPHPRTGIYYPKGHECVMEDVPEGAARFTQTYWFRNDDGVGCTNTQ 105
D +WVPH + +P E + D A F QT + G T Q
Sbjct: 191 DEFEVWVPHVVKNVLFPSREEIINHD--HAVASFNQTVHQVASNETGSTGHQ 42
>TC224343
Length = 524
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 45 PKIISGKTEDSSAIWVPHPRTGIYYPKGHECVMEDVPE 82
PK++ G W H + ++YP+ + E +PE
Sbjct: 68 PKVVGGANSQHGMEWCRHFQMPLHYPRYTQADYEAMPE 181
>TC205170 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid induced
protein ARG2, partial (96%)
Length = 549
Score = 26.6 bits (57), Expect = 2.0
Identities = 20/59 (33%), Positives = 24/59 (39%), Gaps = 14/59 (23%)
Frame = +3
Query: 27 FSGTTAK---AAAAESSEEGVPKIISGKTEDSSA-----------IWVPHPRTGIYYPK 71
FS T + AAA +S+ G IS K S WVP P TG Y P+
Sbjct: 228 FSNTLTRRGYAAATQSATRGGAASISSKIAPKSGEDKVGGGAEKVSWVPDPVTGYYKPE 404
>TC205426 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partial (71%)
Length = 1303
Score = 26.6 bits (57), Expect = 2.0
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 3 RGGITKSTLLILRGARRAENRVM-KFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVP 61
RGG+T + L ILRG R A VM + +G + S G+ G E+ W
Sbjct: 595 RGGVTGALLDILRGGRLAGMEVMLRMNGMRKEEGWFPSMRVGL-----GNEEEVGLAW-- 437
Query: 62 HPRTGIYYPKGHECVMEDVPEGAARFT 88
TG+ Y + +C + + E A +F+
Sbjct: 436 *DGTGLGYDE--DCGLA*MEEHALKFS 362
>TC215471 homologue to UP|IFE3_ARATH (Q9FK59) Eukaryotic translation
initiation factor 4E type 3 (eIF4E type 3) (eIF-4E type
3) (mRNA cap-binding protein type 3) (Novel cap-binding
protein) (nCBP), partial (56%)
Length = 696
Score = 26.2 bits (56), Expect = 2.6
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 12/42 (28%)
Frame = +3
Query: 75 CVMEDVP------EGAARFTQ------TYWFRNDDGVGCTNT 104
CV+ VP A FTQ ++W R+ DG GC+ T
Sbjct: 531 CVLAKVPAVEAILHTGAAFTQPGLVSLSHWLRSSDGAGCSWT 656
>TC232992 weakly similar to UP|Q8GT20 (Q8GT20) Benzoyl coenzyme A: benzyl
alcohol benzoyl transferase, partial (39%)
Length = 1078
Score = 25.8 bits (55), Expect = 3.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 44 VPKIISGKTEDSSAIWVPHPRTGIYYPKGHECVMEDVP 81
+PK + + +W+P PR I+Y + + VMED P
Sbjct: 625 IPKHTQMDSRITFVMWLPLPRAQIHY-RNNP*VMEDSP 515
>TC204678 similar to UP|Q94EJ6 (Q94EJ6) AT4g18030/T6K21_210, partial (91%)
Length = 2339
Score = 25.8 bits (55), Expect = 3.4
Identities = 20/78 (25%), Positives = 33/78 (41%)
Frame = +1
Query: 14 LRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGIYYPKGH 73
L G R N + +G AAA ES + V ++ E++ G+ Y +G
Sbjct: 1456 LIGTTRYRNVMDMNAGLGGFAAALESQKSWVMNVVPSIAENT---------LGVVYERGL 1608
Query: 74 ECVMEDVPEGAARFTQTY 91
+ D EG + + +TY
Sbjct: 1609 IGIYHDWCEGFSTYPRTY 1662
>TC205427 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partial (71%)
Length = 1375
Score = 25.4 bits (54), Expect = 4.4
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = -3
Query: 3 RGGITKSTLLILRGARRAENRVM 25
RGG+T + L ILRG R A VM
Sbjct: 695 RGGVTGALLDILRGGRLAGMEVM 627
>TC229522
Length = 530
Score = 25.4 bits (54), Expect = 4.4
Identities = 16/51 (31%), Positives = 25/51 (48%)
Frame = -3
Query: 43 GVPKIISGKTEDSSAIWVPHPRTGIYYPKGHECVMEDVPEGAARFTQTYWF 93
GVP + + T +SAI + P G+Y+ G + D R +Q Y+F
Sbjct: 522 GVPPVHTT*TPQASAICISLPVPGVYFSWG--IAICDAK*FKPRLSQVYYF 376
>TC229384 similar to UP|Q9VAQ0 (Q9VAQ0) CG1401-PA, partial (3%)
Length = 824
Score = 25.4 bits (54), Expect = 4.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -2
Query: 30 TTAKAAAAESSEEGVPKIISG---KTEDSSAIWVPHP 63
T A A E+S G PKI G K E++ IW+P+P
Sbjct: 400 TNASP*AVENSGWG-PKISKGF*KKIENTVKIWIPNP 293
>BM893519 similar to GP|22475197|gb homeodomain protein GhHOX2 {Gossypium
hirsutum}, partial (13%)
Length = 421
Score = 25.0 bits (53), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 62 HPRTGIYYPKGHECVMEDVPEGAARFT 88
HP Y + CV++D+P G +R T
Sbjct: 87 HPSYPRYCRRSSGCVIQDMPNGYSRVT 167
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,657,669
Number of Sequences: 63676
Number of extensions: 56019
Number of successful extensions: 263
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of query: 106
length of database: 12,639,632
effective HSP length: 82
effective length of query: 24
effective length of database: 7,418,200
effective search space: 178036800
effective search space used: 178036800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0335b.2