BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.8
(104 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205999 weakly similar to UP|CB21_LEMGI (P12328) Chlorophyll a-... 203 1e-53
TC203753 similar to PIR|S04125|S04125 chlorophyll a/b-binding pr... 101 6e-23
TC203258 similar to UP|Q32904 (Q32904) Light harvesting protein,... 101 6e-23
TC214280 UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein type... 100 1e-22
TC214292 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding... 100 1e-22
TC214059 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding... 100 1e-22
TC227657 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein ... 100 2e-22
CD395698 99 2e-22
CD409997 99 2e-22
CD411090 99 3e-22
TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 99 3e-22
TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 99 3e-22
TC203663 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein ... 99 3e-22
TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 99 3e-22
TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, com... 99 3e-22
TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 99 3e-22
CD391767 GP|1053216|gb chlorophyll a/b-binding protein {Glycine ... 99 3e-22
CD392042 99 3e-22
TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I c... 99 3e-22
CD395422 99 3e-22
>TC205999 weakly similar to UP|CB21_LEMGI (P12328) Chlorophyll a-b binding
protein of LHCII type I, chloroplast precursor (CAB)
(LHCP), partial (49%)
Length = 1265
Score = 203 bits (516), Expect = 1e-53
Identities = 94/103 (91%), Positives = 99/103 (95%)
Frame = +3
Query: 1 VGPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAM 60
VGPEYARYCG EALEPLGIYLPGDINYPGGALFDPLNLS DPEAF ELKVKEIKNGRLAM
Sbjct: 720 VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAM 899
Query: 61 IAWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLLGSLNFLKVI 103
+AWLGFY+QAALTGKGPVQNL+DH SDPFHNNLLGSLNF+KV+
Sbjct: 900 VAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLLGSLNFIKVV 1028
>TC203753 similar to PIR|S04125|S04125 chlorophyll a/b-binding protein type
III precursor - tomato {Lycopersicon esculentum;} ,
partial (94%)
Length = 1354
Score = 101 bits (251), Expect = 6e-23
Identities = 45/77 (58%), Positives = 59/77 (76%)
Frame = +3
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG F+PL KD ++ +LK+KE+KNGRLAM+A LG+++QA +TG GP QNLL
Sbjct: 651 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 830
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP HNN+L SL F
Sbjct: 831 DHLADPVHNNILTSLKF 881
>TC203258 similar to UP|Q32904 (Q32904) Light harvesting protein, complete
Length = 1221
Score = 101 bits (251), Expect = 6e-23
Identities = 45/77 (58%), Positives = 59/77 (76%)
Frame = +3
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG F+PL KD ++ +LK+KE+KNGRLAM+A LG+++QA +TG GP QNLL
Sbjct: 768 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 947
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP HNN+L SL F
Sbjct: 948 DHLADPVHNNILTSLKF 998
>TC214280 UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein type II
precursor, partial (38%)
Length = 1174
Score = 100 bits (248), Expect = 1e-22
Identities = 51/77 (66%), Positives = 60/77 (77%)
Frame = +3
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DP+AFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 777 PLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 947
Query: 76 GPVQNLLDHFSDPFHNN 92
GP+QNL DH +DP NN
Sbjct: 948 GPIQNLYDHVADPVANN 998
>TC214292 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein type
II precursor, complete
Length = 1686
Score = 100 bits (248), Expect = 1e-22
Identities = 51/77 (66%), Positives = 60/77 (77%)
Frame = +2
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DP+AFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 1172 PLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 1342
Query: 76 GPVQNLLDHFSDPFHNN 92
GP+QNL DH +DP NN
Sbjct: 1343 GPIQNLYDHVADPVANN 1393
Score = 38.9 bits (89), Expect = 4e-04
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +2
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E + YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 785 GPDRPKYLGPFS-EQIPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 955
Query: 62 AWLG 65
LG
Sbjct: 956 GALG 967
>TC214059 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II precursor, complete
Length = 1079
Score = 100 bits (248), Expect = 1e-22
Identities = 51/77 (66%), Positives = 60/77 (77%)
Frame = +2
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DP+AFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 644 PLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 814
Query: 76 GPVQNLLDHFSDPFHNN 92
GP+QNL DH +DP NN
Sbjct: 815 GPIQNLYDHVADPVANN 865
Score = 38.9 bits (89), Expect = 4e-04
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +2
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E + YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 257 GPDRPKYLGPFS-EQIPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 427
Query: 62 AWLG 65
LG
Sbjct: 428 GALG 439
>TC227657 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII
type I, chloroplast precursor (CAB) (LHCP) (Fragment),
partial (33%)
Length = 1014
Score = 99.8 bits (247), Expect = 2e-22
Identities = 51/90 (56%), Positives = 64/90 (70%)
Frame = +2
Query: 3 PEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIA 62
P AR G E +P+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM +
Sbjct: 596 PNSAR--GGEVTDPI---------YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFS 739
Query: 63 WLGFYMQAALTGKGPVQNLLDHFSDPFHNN 92
GF++QA +TGKGP++NL DH +DP +NN
Sbjct: 740 MFGFFVQAIVTGKGPLENLADHLADPVNNN 829
>CD395698
Length = 570
Score = 99.4 bits (246), Expect = 2e-22
Identities = 46/69 (66%), Positives = 57/69 (81%)
Frame = -3
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 385 DPMYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 209
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 208 HLADPVNNN 182
>CD409997
Length = 696
Score = 99.4 bits (246), Expect = 2e-22
Identities = 46/70 (65%), Positives = 55/70 (77%)
Frame = +3
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG FDPL L+ DP FAELKVKEIKNGRLAM + LGF++QA +TGKGP++NLL
Sbjct: 468 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMLGFFVQAIVTGKGPLENLL 647
Query: 83 DHFSDPFHNN 92
DH +P NN
Sbjct: 648 DHLDNPVANN 677
>CD411090
Length = 533
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = -1
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 350 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 174
Query: 87 DPFHNN 92
DP +NN
Sbjct: 173 DPVNNN 156
>TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (52%)
Length = 1448
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +2
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 1082 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 1258
Query: 87 DPFHNN 92
DP +NN
Sbjct: 1259 DPVNNN 1276
>TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (74%)
Length = 777
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 360 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 536
Query: 87 DPFHNN 92
DP +NN
Sbjct: 537 DPVNNN 554
Score = 33.5 bits (75), Expect = 0.017
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
+PG +D LS DPE FA+ + E+ + R AM+ LG L+ G
Sbjct: 12 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 161
>TC203663 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII
type I, chloroplast precursor (CAB) (LHCP) (Fragment),
partial (37%)
Length = 671
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +1
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 322 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 498
Query: 87 DPFHNN 92
DP +NN
Sbjct: 499 DPVNNN 516
>TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (77%)
Length = 739
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 378 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 554
Query: 87 DPFHNN 92
DP +NN
Sbjct: 555 DPVNNN 572
Score = 35.4 bits (80), Expect = 0.004
Identities = 21/57 (36%), Positives = 30/57 (51%)
Frame = +3
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
YL G+ +PG +D LS DPE FA+ + E+ + R AM+ LG L+ G
Sbjct: 15 YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 179
>TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, complete
Length = 1427
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +1
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 988 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 1164
Query: 87 DPFHNN 92
DP +NN
Sbjct: 1165 DPVNNN 1182
Score = 41.6 bits (96), Expect = 6e-05
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 574 GPDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 744
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 745 GALGCVFPELLSRNG 789
>TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (92%)
Length = 916
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 507 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 683
Query: 87 DPFHNN 92
DP +NN
Sbjct: 684 DPVNNN 701
Score = 41.6 bits (96), Expect = 6e-05
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = +3
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + EP YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 93 GPDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 263
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 264 GALGCVFPELLARNG 308
>CD391767 GP|1053216|gb chlorophyll a/b-binding protein {Glycine max},
partial (38%)
Length = 550
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = -2
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 357 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 181
Query: 87 DPFHNN 92
DP +NN
Sbjct: 180 DPVNNN 163
>CD392042
Length = 645
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = -3
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 325 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 149
Query: 87 DPFHNN 92
DP +NN
Sbjct: 148 DPVNNN 131
>TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I chlorophyll
a/b-binding protein precursor, partial (69%)
Length = 908
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +2
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 542 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 718
Query: 87 DPFHNN 92
DP +NN
Sbjct: 719 DPVNNN 736
>CD395422
Length = 658
Score = 99.0 bits (245), Expect = 3e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = -1
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 373 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 197
Query: 87 DPFHNN 92
DP +NN
Sbjct: 196 DPVNNN 179
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.144 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,491,542
Number of Sequences: 63676
Number of extensions: 48217
Number of successful extensions: 389
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of query: 104
length of database: 12,639,632
effective HSP length: 80
effective length of query: 24
effective length of database: 7,545,552
effective search space: 181093248
effective search space used: 181093248
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0335a.8