BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.7
(632 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220322 93 7e-35
BM308209 67 8e-22
TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transp... 88 1e-17
BF425842 72 6e-13
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1... 69 6e-12
BE806360 similar to GP|6175165|gb| Mutator-like transposase {Ara... 56 6e-08
TC220753 49 7e-06
TC212788 similar to GB|AAF04891.1|6175165|ATAC011437 Mutator-lik... 43 4e-04
TC232149 40 0.002
TC214000 38 0.012
AI856054 35 0.029
BM108247 weakly similar to PIR|H84710|H847 Mutator-like transpos... 36 0.045
TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired r... 35 0.10
BQ081087 35 0.13
CF921796 34 0.23
BI785166 33 0.50
BM309807 similar to GP|5764395|gb| far-red impaired response pro... 32 0.66
TC211287 32 0.86
TC206790 homologue to UP|Q940Y6 (Q940Y6) AT4g27600/T29A15_90, pa... 32 1.1
TC218141 weakly similar to UP|Q6YS56 (Q6YS56) Splicing coactivat... 31 1.9
>TC220322
Length = 1264
Score = 92.8 bits (229), Expect(2) = 7e-35
Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 353 AKATYEAAWKEKMLLIKDANESAYQWLMEKPTSSWCRHAFSLYSRCDVVMNNLSEAFNAA 412
AK+T A ++ M +K N A+++L + P +W + FS + D + NN E FN
Sbjct: 8 AKSTTVAEFEGHMAHLKTINCQAWEYLNKWPKQAWTKAHFSTIPKVDNICNNTCEVFNFR 187
Query: 413 IMLARDKPILTMMEWIRTYVMGRFPQMMEKLHKHHGQIMPRPLKRILHEVDHIKNWIPRV 472
I+ R KPI+TM+E IR+Y+M KL G + KR+ E W P
Sbjct: 188 ILQYRCKPIITMLEEIRSYIMRTMAARKVKLSGKPGPLCLVQYKRLEKEFHFANQWTPIW 367
Query: 473 VG---AQKYEVRHTITLERHVISLKDKSCTCRFWELNGFPCRHAASALT 518
G +YEV + + ++L +CTC W+L G PCRHA + +T
Sbjct: 368 CGDNMGLRYEVH--MWGNKVEVNLAGWTCTCGVWQLTGMPCRHAIATIT 508
Score = 73.6 bits (179), Expect(2) = 7e-35
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +1
Query: 521 GNDPKQFVDDCYKREAYNATYENYVTPLPGPNQWIVTPHD-PVCILPPMYKRSAGRPKKL 579
G P+ + EAYN TY++++ P+ GP W T + PV PP + GRPKK
Sbjct: 517 GGKPEDMCHEWLSIEAYNKTYQHFIEPVQGPQYWAQTQYTHPV---PPYKRVQRGRPKKN 687
Query: 580 RRRDPYENDPNPTKLQRGGATWKCSRCKQYGHNKRGCKN 618
R+R E++ KL+R A + C RC Q HN R CKN
Sbjct: 688 RKRSVDEDNVTGHKLKRKLAEFTCGRCGQTNHNIRSCKN 804
>BM308209
Length = 435
Score = 66.6 bits (161), Expect(2) = 8e-22
Identities = 27/52 (51%), Positives = 38/52 (72%)
Frame = +2
Query: 368 IKDANESAYQWLMEKPTSSWCRHAFSLYSRCDVVMNNLSEAFNAAIMLARDK 419
IK+ N AY WL++ T W +H FS Y++CDV+MNNL +AFN+ I+ AR+K
Sbjct: 122 IKEVNNEAYDWLIKVGTKLWRKHTFSYYTKCDVLMNNLCDAFNSTILCAREK 277
Score = 55.8 bits (133), Expect(2) = 8e-22
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3
Query: 329 RHLYANMKTKFGGGVLLRDLMMGAAKATYEAAWKEKMLLIK 369
RH+Y N K KF GG LLR+LMM AAKA++E AW EKM + K
Sbjct: 6 RHIYNNFKNKFVGGTLLRNLMMRAAKASFEEAWDEKMNISK 128
Score = 45.8 bits (107), Expect = 6e-05
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 467 NWIPRVVGAQKYEVRHTITLERHVISLKDKSCTCRFWELNGFPCRHAASAL 517
NW + G +EV H++ ++ +++L SC+ WE+ G CRHA +A+
Sbjct: 282 NWFATLSGHLVFEVSHSMLSDKFIVNLNSWSCS*NLWEITGILCRHACAAI 434
>TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transposase
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (12%)
Length = 617
Score = 88.2 bits (217), Expect = 1e-17
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Frame = +2
Query: 490 VISLKDKSCTCRFWELNGFPCRHAASALTFNGNDPKQFVDDCYKREAYNATYENYVTPLP 549
++++ SC+CR W+LNG PC HAA+AL D F C+ ++ TY + P+P
Sbjct: 17 IVNIGSHSCSCRDWQLNGIPCSHAAAALISCRKDVYAFSQKCFTAASFRDTYAETIHPIP 196
Query: 550 GPNQWIVTPHDP-----VCILPPMYKRSAGRPKKLRRRDPYENDPNPTKLQRGGATWKCS 604
G +W T + + + PP +R GRP+K D L R T CS
Sbjct: 197 GKLEWSKTGNSSMDDNILVVRPPKLRRPPGRPEKRMCVD---------DLNREKHTVHCS 349
Query: 605 RCKQYGHNKRGCK 617
RC Q GH KR CK
Sbjct: 350 RCNQTGHYKRTCK 388
>BF425842
Length = 414
Score = 72.4 bits (176), Expect = 6e-13
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = +3
Query: 216 FSRFYMCLDGCKRGFLAGCRPFIGLDGCHLKTKHRGILLAAVARDANEQYFPLAFGVVES 275
F F C++G K C+P + +DG L K+ LL A+ +D + FPLAF +VES
Sbjct: 36 F*AFNPCIEGFKY-----CKPLVQVDGTFLTGKYNDTLLTAIGQDGSRDNFPLAFAIVES 200
Query: 276 ETKDSWMWFMELLMDDIDPERSRRWVFISDQQKGLMEVFKEDMLHGS----EHRLCVRHL 331
ETK++W+WF+ L + P+ + ISD+ GL+ + + + C+RH+
Sbjct: 201 ETKEAWIWFLHYL*RYVTPQPN--LCIISDRGTGLLATLQSKHVGWNGPDVSSVYCIRHI 374
Query: 332 YANMKTKF 339
+N F
Sbjct: 375 ASNFNK*F 398
>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;} , partial (6%)
Length = 814
Score = 68.9 bits (167), Expect = 6e-12
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Frame = +1
Query: 490 VISLKDKSCTCRFWELNGFPCRHAASALTFNGNDPKQFVDDCYKREAYNATYENYVTPLP 549
++ + + C+C+ W+L G PC HA + G P + + E Y TY + P+P
Sbjct: 64 IVDIDNWDCSCKGWQLTGVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVP 243
Query: 550 GPNQWIVTPHDP--VCILPPMYKRSAGRPKKLRRRDPYENDPNPTKLQRGGATWKCSRCK 607
++ V V ++PP KR GRPK + D +LQ CS+CK
Sbjct: 244 NVDKPPVQGESTALVMVIPPPTKRPPGRPK---MKQVESIDIIKRQLQ-------CSKCK 393
Query: 608 QYGHNKRGCK 617
GHN++ CK
Sbjct: 394 GLGHNRKTCK 423
>BE806360 similar to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (17%)
Length = 431
Score = 55.8 bits (133), Expect = 6e-08
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Frame = +2
Query: 269 AFGVVESETKDSWMWFMELLMD--DIDPERSRRWVFISDQQKGLMEVFKEDMLHGSEHRL 326
AFGVV+ E D+WMWF+ L + +I E R +SD+QKG+++ E + H
Sbjct: 2 AFGVVDEENDDNWMWFLSELHNLLEIHTENMLRLTILSDRQKGIVDGV-EASFPTAFHGF 178
Query: 327 CVRHLYANMKTKFGGGVLLRDLMMGAAKATYEAAWKEKMLLIK 369
C++HL + + +F +L+ +L+ AA A E K++ +K
Sbjct: 179 CMQHLSDSFRKEFNNTMLV-NLLWEAANALTELNLKQRFWRLK 304
>TC220753
Length = 1312
Score = 48.9 bits (115), Expect = 7e-06
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Frame = +2
Query: 491 ISLKDKSCTCRFWELNGFPCRHAASALTFNGNDPKQFVDDCYKREAYNATYENYVTPLPG 550
+ L + C ++ PC HA +A F + FVD YK E Y+++ L
Sbjct: 215 VKLNEWLCDYGQFQALRLPCSHAIAACAFCNLNYDDFVDPVYKLENIFKVYQHHFHSLGS 394
Query: 551 PNQW--IVTPHDPVCILPPMYKRSAGRPKKLR-RRDPYENDPNPTKLQRGGATWKCSRCK 607
+ W + PH P ++ +GRP R + E+ PN K KCS CK
Sbjct: 395 EDTWPQYLGPH--FMSDPSKRRQISGRPATTRIHNEMDESIPNRLK--------KCSLCK 544
Query: 608 QYGHNKRGC 616
GHN+ C
Sbjct: 545 TEGHNQSNC 571
>TC212788 similar to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
transposase {Arabidopsis thaliana;} , partial (11%)
Length = 646
Score = 43.1 bits (100), Expect = 4e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +3
Query: 39 FKFSLGMDFSSLLQFKDALHDHFVTIGREFEYMKNDSIRCRVKCRSKGCPFVILCSKVGN 98
++ S+G +F + + AL D + + E + +K+D R KC S+GCP+ I +K+
Sbjct: 447 YELSVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLPG 626
Query: 99 KETF 102
TF
Sbjct: 627 VPTF 638
>TC232149
Length = 1005
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/144 (27%), Positives = 60/144 (40%), Gaps = 34/144 (23%)
Frame = -3
Query: 421 ILTMMEWIRTYVMGRFPQMMEKLHKHHGQIMPRPLKRILH-EVDHIK---NWIPRVVGAQ 476
IL M E IRTY+M + K+ ++P RI +V+ K NW+ G
Sbjct: 427 ILNMCEDIRTYIMCKMKSDKLKMATRLRPLVPMQQSRIEKGKVESNK*TANWVGDPDGT- 251
Query: 477 KYEVRHTITLERHVISLKDKSCTCRFWEL------------------------------N 506
+++V H T R + L++ S TCR W+L
Sbjct: 250 RFKVCHYDT--RLNVDLQN*SFTCRMWQLIGIPLS*LNLSILDIMYCVTMNLMFFWFIYI 77
Query: 507 GFPCRHAASALTFNGNDPKQFVDD 530
G PCRHA A+ +N + P+ + DD
Sbjct: 76 GMPCRHAIVAIRYNYHIPEGYSDD 5
>TC214000
Length = 659
Score = 38.1 bits (87), Expect = 0.012
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3
Query: 578 KLRRRDPYENDPNPTKLQRGGATWKCSRCKQYGHNKRGCKN 618
+LRRR+ + D N KL+ T C RC + GHNKR CKN
Sbjct: 6 RLRRRE-VDED*NDHKLRGTNTTN*CWRCHKLGHNKRTCKN 125
>AI856054
Length = 173
Score = 35.0 bits (79), Expect(2) = 0.029
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = -1
Query: 405 LSEAFNAAIMLARDKPILTMMEWIRTYVMGRFPQMMEKLHKHHGQIM 451
+ E+FN+ I+ AR+K I++M+E I Y+M R+ +K+ G ++
Sbjct: 143 ICESFNSVILEAREKLIVSMLEDIHIYLMERWDTNSKKVVAREGSVL 3
Score = 20.8 bits (42), Expect(2) = 0.029
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = -3
Query: 396 SRCDVVMNNL 405
S+CDV++NN+
Sbjct: 168 SKCDVLLNNM 139
>BM108247 weakly similar to PIR|H84710|H847 Mutator-like transposase
[imported] - Arabidopsis thaliana, partial (4%)
Length = 265
Score = 36.2 bits (82), Expect = 0.045
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +2
Query: 348 LMMGAAKATYEAAWKEKMLLIKDANESAYQWLMEKPTSSWCRHAFSLYSRCDVVMNNLSE 407
L+ A+ AT A+KEKM I++ + A +WL + S W F +R + +N+ E
Sbjct: 23 LLWKASHATTTIAFKEKMGEIEEVSPEAAKWLQQFXPSQWALVHFK-GTRFGHLSSNIEE 199
Query: 408 AFNAAIMLARDKPILTMM 425
FN I+ R+ PI+ ++
Sbjct: 200 -FNKWILDTRELPIIXVI 250
>TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein; Mutator-like transposase-like protein;
phytochrome A signaling protein-like, partial (25%)
Length = 1354
Score = 35.0 bits (79), Expect = 0.10
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Frame = +2
Query: 497 SCTCRFWELNGFPCRHAASALTFNGND--PKQFVDDCYKREA 536
SC CR +E G+ CRHA L ++G P Q++ + ++A
Sbjct: 239 SCICRLFEYRGYLCRHALFVLQYSGQSVFPSQYILKRWTKDA 364
>BQ081087
Length = 427
Score = 34.7 bits (78), Expect = 0.13
Identities = 18/51 (35%), Positives = 23/51 (44%), Gaps = 2/51 (3%)
Frame = -2
Query: 547 PLPGPNQ--WIVTPHDPVCILPPMYKRSAGRPKKLRRRDPYENDPNPTKLQ 595
PLP P Q W P + PP A P+ RDP E +P P ++Q
Sbjct: 219 PLPQPEQELWFPLPQPEQVVAPPPLSSRAAEPQLAVARDPPEPEPGP*QVQ 67
>CF921796
Length = 495
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/65 (32%), Positives = 30/65 (45%)
Frame = +2
Query: 557 TPHDPVCILPPMYKRSAGRPKKLRRRDPYENDPNPTKLQRGGATWKCSRCKQYGHNKRGC 616
TP DP PP+ ++ P + ++R P+ P K RGG K + + KRG
Sbjct: 242 TPWDP----PPLVQKKKKNPPQ-KKRGPHRGGGEPKKPPRGGPRGKNGKKPFFSPPKRGQ 406
Query: 617 KNPVP 621
K P P
Sbjct: 407 KPPPP 421
>BI785166
Length = 425
Score = 32.7 bits (73), Expect = 0.50
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Frame = +1
Query: 569 YKRSAGRPKKLRRRDPYENDPNPTKLQRGGAT----WKCSRCKQYGHNKRGCK 617
Y GR K++R END + GAT + S+C YGHNK C+
Sbjct: 136 YMTPVGRQKEVRS----ENDDQQSHTN*RGATSNTLLRYSKCNNYGHNKNNCQ 282
>BM309807 similar to GP|5764395|gb| far-red impaired response protein
{Arabidopsis thaliana}, partial (15%)
Length = 428
Score = 32.3 bits (72), Expect = 0.66
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = +3
Query: 497 SCTCRFWELNGFPCRHAASAL 517
SC CR +E GF CRHA S L
Sbjct: 234 SCFCRLFEYKGFLCRHALSVL 296
>TC211287
Length = 433
Score = 32.0 bits (71), Expect = 0.86
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 556 VTPHDP--VCILPPMYKRSAGRPKKLRRRDPYENDPNPTKLQRGGATW 601
+ P P V P + +RSA P+ RRR+P P P RGG W
Sbjct: 198 IRPETPSRVATRPALPRRSAATPRP-RRRNPLRAPPPPMP*MRGGGVW 338
>TC206790 homologue to UP|Q940Y6 (Q940Y6) AT4g27600/T29A15_90, partial (15%)
Length = 529
Score = 31.6 bits (70), Expect = 1.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 558 PHDPVCILPP---MYKRSAGRPKKLRRRDPYENDPNPTKLQRGGATWKCS 604
PH P C +PP + A P++ R R +E+ + +R G +W S
Sbjct: 159 PHSPHCFMPP*GRLLSFEAASPRRYRIRTTHEDQLRRRRRRRRGISWLLS 308
>TC218141 weakly similar to UP|Q6YS56 (Q6YS56) Splicing coactivator
subunit-like protein, partial (14%)
Length = 895
Score = 30.8 bits (68), Expect = 1.9
Identities = 27/95 (28%), Positives = 38/95 (39%), Gaps = 11/95 (11%)
Frame = -3
Query: 538 NATYENYVTPLPG-PNQWIVT----PHDPVCILPPMYKRSAGRPKKLRRRDPYENDP--- 589
N ++ N TP P P++ ++ PH P I PP Y A P L R P P
Sbjct: 746 NPSHPNLKTPPPNQPSEPLLPRLQHPHAPHQIRPPCYSAGAPTPAALHHRPPRLLHPPIR 567
Query: 590 ---NPTKLQRGGATWKCSRCKQYGHNKRGCKNPVP 621
P L+R + R ++ RG +P P
Sbjct: 566 IRRRPLPLRRDYLCPRRRRRRRRNDRPRGPSHPRP 462
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,331,054
Number of Sequences: 63676
Number of extensions: 542283
Number of successful extensions: 2601
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2593
length of query: 632
length of database: 12,639,632
effective HSP length: 103
effective length of query: 529
effective length of database: 6,081,004
effective search space: 3216851116
effective search space used: 3216851116
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0335a.7