BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.6
(109 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW278239 57 1e-09
AW781827 35 8e-04
TC229607 30 0.23
AW704001 weakly similar to GP|21360380|gb glutathione peroxidase... 28 0.51
BU761482 similar to GP|28372962|gb| At2g48150 {Arabidopsis thali... 27 1.1
TC226237 homologue to UP|Q6XQM5 (Q6XQM5) Nicotinate phosphoribos... 27 1.5
BF070977 similar to GP|18087570|gb| AT3g54650/T5N23_10 {Arabidop... 27 1.9
BM523725 27 1.9
TC227001 similar to GB|AAR28010.1|39545894|AY463608 TFIIE-beta 2... 27 1.9
BU546116 26 2.5
TC229742 weakly similar to UP|Q8H9B4 (Q8H9B4) UDP-glucose:sterol... 26 3.3
TC226999 similar to GB|AAR28010.1|39545894|AY463608 TFIIE-beta 2... 26 3.3
TC227046 similar to UP|Q43525 (Q43525) Transcription factor, par... 25 4.3
BM893403 25 4.3
TC219531 25 4.3
TC203271 similar to UP|GPX4_CITSI (Q06652) Probable phospholipid... 25 5.6
TC229108 homologue to UP|O22512 (O22512) Grr1, partial (22%) 25 5.6
TC205866 UP|O04720 (O04720) Cysteine proteinase inhibitor, complete 25 7.4
TC226813 25 7.4
>AW278239
Length = 417
Score = 57.4 bits (137), Expect = 1e-09
Identities = 26/43 (60%), Positives = 31/43 (71%)
Frame = +3
Query: 20 LVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNP 62
L SQPL NY TWS A++VA S+KNKV F+DGSLP P +P
Sbjct: 285 LTSQPLDHKNYTTWSLAMMVAFSVKNKVAFIDGSLPMPTIADP 413
>AW781827
Length = 420
Score = 35.4 bits (80), Expect(2) = 8e-04
Identities = 22/75 (29%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
Frame = +3
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDN-PQLNSWIRNNNVV 74
P LVS PLT +Y+T ++ + +S+ FV+G + R + P L W + +++
Sbjct: 174 PGLNLVSWPLTSDDYSTLLHSMKM-VSVAKADGFVNGLVNRADASGAPMLLEWQSH*SII 350
Query: 75 ISWIFNAVSKDITTS 89
W N++SK+ S
Sbjct: 351 SVWPLNSISKETNVS 395
Score = 21.6 bits (44), Expect(2) = 8e-04
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +2
Query: 1 YGRHCQSFLPSSFRWPRP 18
+G H Q L SSF PRP
Sbjct: 128 HG*HLQFILSSSFG*PRP 181
>TC229607
Length = 1575
Score = 29.6 bits (65), Expect = 0.23
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Frame = -3
Query: 70 NNNVVISWIFNAVSKDITTSM-YSDTASEI 98
NNN+V WI N++SK+ + S+ YS T + +
Sbjct: 1330 NNNIVSLWILNSISKETSASLIYSFTITHM 1241
>AW704001 weakly similar to GP|21360380|gb glutathione peroxidase 1 {Oryza
sativa}, partial (80%)
Length = 424
Score = 28.5 bits (62), Expect = 0.51
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Frame = -2
Query: 4 HCQSFLP--SSFRWPRPRLVSQPLTESNYNTWSRAVL 38
HC++ L SSF PRL+S PL ++WS L
Sbjct: 120 HCEATLTMISSFPSQSPRLISFPLASLTVSSWSALAL 10
>BU761482 similar to GP|28372962|gb| At2g48150 {Arabidopsis thaliana},
partial (54%)
Length = 445
Score = 27.3 bits (59), Expect = 1.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 59 EDNPQLNSWIRNNNVVISWIF-NAVSKDITTSMY 91
+ NP +NSW RN + SW+ +A +D+ S Y
Sbjct: 159 QKNPSMNSWSRN---LFSWLAQDAKGRDVNLSTY 251
>TC226237 homologue to UP|Q6XQM5 (Q6XQM5) Nicotinate
phosphoribosyltransferase-like protein, partial (29%)
Length = 869
Score = 26.9 bits (58), Expect = 1.5
Identities = 18/65 (27%), Positives = 30/65 (45%)
Frame = +2
Query: 25 LTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWIFNAVSK 84
L+ +N W + L KN VP SLPR +E + R + V+++W + +
Sbjct: 227 LSPGRHNDWRK*ALSKGGRKNPVP---SSLPRIQESICSATAC*RASEVLLAWEY*YKER 397
Query: 85 DITTS 89
T+S
Sbjct: 398 YFTSS 412
>BF070977 similar to GP|18087570|gb| AT3g54650/T5N23_10 {Arabidopsis
thaliana}, partial (2%)
Length = 277
Score = 26.6 bits (57), Expect = 1.9
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = +3
Query: 10 PSSFRWPRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDN 61
P S PRPR VS+ L + WS + ++P VD S P E D+
Sbjct: 105 PLSPSLPRPRPVSESLRRISVARWSFD-----DLDERLPVVDRSEPDEEVDS 245
>BM523725
Length = 428
Score = 26.6 bits (57), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (50%)
Frame = +1
Query: 5 CQSFLPSSFRWPRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPF 49
C +FLP SF V P T ++ +S +V++ M+N + +
Sbjct: 196 CANFLPFSFNLCTRNNVFTPATVLTFSCFSSSVIIFHLMRNSLSY 330
>TC227001 similar to GB|AAR28010.1|39545894|AY463608 TFIIE-beta 2
{Arabidopsis thaliana;} , partial (80%)
Length = 1208
Score = 26.6 bits (57), Expect = 1.9
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = -2
Query: 73 VVISWIFNAVSKDITTSMYSDTASEIY 99
+V W+F + KDI S++ D A IY
Sbjct: 502 IVHFWVFPQILKDIFVSLHVDIACPIY 422
>BU546116
Length = 601
Score = 26.2 bits (56), Expect = 2.5
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 18 PRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDG--SLPRPEEDNPQLNSWIRNNNVVI 75
P V S + +S +++ + K P G ++ E N +L +W+R
Sbjct: 554 PEWVLNLAITSKVDVYSYGIVLXEMITGKSPTTTGVQNIDGEEPYNGRLVTWVREKRSAT 375
Query: 76 SWIFNAVSKDITTS 89
SW+ + + I T+
Sbjct: 374 SWLEHIIDPAIKTN 333
>TC229742 weakly similar to UP|Q8H9B4 (Q8H9B4) UDP-glucose:sterol
3-O-glucosyltransferase, partial (34%)
Length = 1133
Score = 25.8 bits (55), Expect = 3.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 3 RHCQSFLPSSFRWPRP 18
+HCQ LPSS +P P
Sbjct: 425 KHCQELLPSSLDFPSP 378
>TC226999 similar to GB|AAR28010.1|39545894|AY463608 TFIIE-beta 2
{Arabidopsis thaliana;} , partial (27%)
Length = 399
Score = 25.8 bits (55), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = -1
Query: 73 VVISWIFNAVSKDITTSMYSDTASEIY 99
+V W+F + KDI S++ D A IY
Sbjct: 363 IVHFWVFPQILKDIFVSLHVDIACLIY 283
>TC227046 similar to UP|Q43525 (Q43525) Transcription factor, partial (58%)
Length = 735
Score = 25.4 bits (54), Expect = 4.3
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 57 PEEDNPQLNSWIRNNNVVISWIFNA-VSKDITTSMYSDTASEIYHGLD 103
P+ D+P L + + N+N+ SKD + ++++ TA+ G D
Sbjct: 429 PQPDHPHLKTLVTNSNLCFPCSLGLHNSKDCSCALHTSTANATATGYD 572
>BM893403
Length = 419
Score = 25.4 bits (54), Expect = 4.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 4 HCQSFLPSSFRWPRPRLVSQPLTESNYNTW 33
H +FLPS FR P L+ PLT + W
Sbjct: 296 HHGTFLPSFFRPPLSSLLCYPLTFFLF*VW 385
>TC219531
Length = 576
Score = 25.4 bits (54), Expect = 4.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 71 NNVVISWIFNAVSKDITTSMYSDTASEIYH 100
NNVV+ W+F++ + + + EI H
Sbjct: 410 NNVVLMWVFSSPRRTVAALLEQMAEEEIVH 499
>TC203271 similar to UP|GPX4_CITSI (Q06652) Probable phospholipid
hydroperoxide glutathione peroxidase (PHGPx)
(Salt-associated protein) , partial (98%)
Length = 778
Score = 25.0 bits (53), Expect = 5.6
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 17/62 (27%)
Frame = -2
Query: 4 HCQSFLPSSFRWP--RPRLVSQPLTESNYNTWS---------------RAVLVALSMKNK 46
HC++ L +P PRL+S PL +W+ + V++ + +NK
Sbjct: 216 HCEATLTMIRTFPL*SPRLISFPLASLTVKSWTDLALEVAIV*SVRREKDVIIVVERRNK 37
Query: 47 VP 48
+P
Sbjct: 36 MP 31
>TC229108 homologue to UP|O22512 (O22512) Grr1, partial (22%)
Length = 1214
Score = 25.0 bits (53), Expect = 5.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 20 LVSQPLTESNYNTW 33
LVSQPL E N +TW
Sbjct: 235 LVSQPLPEENSSTW 276
>TC205866 UP|O04720 (O04720) Cysteine proteinase inhibitor, complete
Length = 1175
Score = 24.6 bits (52), Expect = 7.4
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +1
Query: 6 QSFLPSSFRWP-----RPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEED 60
QS +PSS P PR + P T + W R A + S PRP D
Sbjct: 85 QSVIPSSSSSPFSSLFDPRPGAAPNTTTTTRRWPR*EAYATPKALRT----ASKPRPSLD 252
Query: 61 NPQLNS 66
+P +N+
Sbjct: 253 SPSMNT 270
>TC226813
Length = 999
Score = 24.6 bits (52), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 69 RNNNVVISWIFNAVSKDITTSMYSDTASEI 98
R+NN++ SW+ VS +IT ++ A ++
Sbjct: 388 RHNNILYSWLDFFVSMNITLVIFDTFAKKL 299
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,987,419
Number of Sequences: 63676
Number of extensions: 81043
Number of successful extensions: 449
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of query: 109
length of database: 12,639,632
effective HSP length: 85
effective length of query: 24
effective length of database: 7,227,172
effective search space: 173452128
effective search space used: 173452128
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0335a.6