TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0334a.6
         (203 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209698 weakly similar to UP|Q9LS52 (Q9LS52) Gb|AAD39678.1, par...   254  2e-68
TC229272 weakly similar to UP|Q9XI47 (Q9XI47) F9L1.16, partial (...   176  5e-45
TC224147 similar to UP|Q9LS52 (Q9LS52) Gb|AAD39678.1, partial (37%)   145  1e-35
CA783286                                                              124  3e-29
TC219994                                                               28  3.7
AW348865 similar to SP|P49730|RIR2 Ribonucleoside-diphosphate re...    27  4.8
BE805264                                                               27  8.3
TC217580 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (74%)        27  8.3

>TC209698 weakly similar to UP|Q9LS52 (Q9LS52) Gb|AAD39678.1, partial (41%)
          Length = 1050

 Score =  254 bits (649), Expect = 2e-68
 Identities = 115/143 (80%), Positives = 132/143 (91%)
 Frame = +1

Query: 61  KCKEGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWV 120
           K   GET++DPS+LEFEARS+KDGAWYDVEAFLAHRF+ TGEAEV+VRFVGFGA EDEW+
Sbjct: 250 KMDRGETMQDPSELEFEARSSKDGAWYDVEAFLAHRFLNTGEAEVQVRFVGFGAEEDEWI 429

Query: 121 NIKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCL 180
           NIK SVR+RS+P EST+CS L +GDPVLCFQERRDQAIYYDA I+EIQ+RMHDIRGCRCL
Sbjct: 430 NIKTSVRQRSIPLESTECSNLKIGDPVLCFQERRDQAIYYDAHIVEIQKRMHDIRGCRCL 609

Query: 181 ILVRYDHDNTEEKVRLRRLCRRP 203
           +L+ YDHDN+EE+VRLRRLCRRP
Sbjct: 610 LLIHYDHDNSEERVRLRRLCRRP 678



 Score = 60.8 bits (146), Expect = 4e-10
 Identities = 33/69 (47%), Positives = 41/69 (58%)
 Frame = +2

Query: 1   MDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEARIQDLPEVPENNLESSQG 60
           M+KL  E  G S  REFYQKL  SFN SSGRAGKP +KWTE ++    +    NL+    
Sbjct: 140 MEKLLREPTGGSLGREFYQKLARSFNYSSGRAGKPIIKWTEEKLCKTHQ--SWNLKQDHQ 313

Query: 61  KCKEGETIR 69
           K + G  +R
Sbjct: 314 KMEHGMMLR 340


>TC229272 weakly similar to UP|Q9XI47 (Q9XI47) F9L1.16, partial (53%)
          Length = 1079

 Score =  176 bits (447), Expect = 5e-45
 Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 16/219 (7%)
 Frame = +3

Query: 1   MDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEARI---------------- 44
           ++++  +  G+ F+R+  Q++   F+ SS  AGK ++ W + ++                
Sbjct: 156 LERIYKDVVGKVFNRKLCQEIAKRFSSSSNGAGKNSLSWQQVQLWFRNSQRMLLGEDISS 335

Query: 45  QDLPEVPENNLESSQGKCKEGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAE 104
            DL ++  +  +S      +G+   D   + FEARSTKD AW+DV  FL +R + TGE E
Sbjct: 336 SDLLKISADLADSPLLGNGKGKQATDLDDMGFEARSTKDNAWHDVSMFLNYRVLSTGELE 515

Query: 105 VRVRFVGFGASEDEWVNIKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARI 164
           VRVR+ GFG  +DEW+N+K  VRERS+P E ++C  +  GD VLCF E+ D A+Y DARI
Sbjct: 516 VRVRYAGFGKEQDEWMNVKLGVRERSIPLEPSECHKVKDGDLVLCFLEKEDYALYCDARI 695

Query: 165 LEIQRRMHDIRGCRCLILVRYDHDNTEEKVRLRRLCRRP 203
           ++IQR++HD   C C  +V++ HDNTEE V   R+C RP
Sbjct: 696 VKIQRKIHDPTDCTCTFIVQFVHDNTEEGVSFSRICCRP 812


>TC224147 similar to UP|Q9LS52 (Q9LS52) Gb|AAD39678.1, partial (37%)
          Length = 816

 Score =  145 bits (366), Expect = 1e-35
 Identities = 63/109 (57%), Positives = 83/109 (75%)
 Frame = +3

Query: 95  HRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFESTDCSYLNVGDPVLCFQERR 154
           HR++ T + EV  RF GFG  EDEW+NI+  VR RS+P ES++C  +  GD +LCFQE +
Sbjct: 3   HRYLETSDPEVLXRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGK 182

Query: 155 DQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDNTEEKVRLRRLCRRP 203
           +QA+Y+DA +L+ QRR HD+RGCRC  LVRYDHD +EE V LR++CRRP
Sbjct: 183 EQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRP 329


>CA783286 
          Length = 460

 Score =  124 bits (311), Expect = 3e-29
 Identities = 65/104 (62%), Positives = 75/104 (71%), Gaps = 6/104 (5%)
 Frame = +2

Query: 1   MDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTE------ARIQDLPEVPENN 54
           M+KL  E  G S  +EFYQKL  SFN SSGRAGKP +KWTE       R+QD   VP + 
Sbjct: 152 MEKLLREPTGGSLGKEFYQKLARSFNYSSGRAGKPIIKWTEIESWFQTRLQDSSLVPSSE 331

Query: 55  LESSQGKCKEGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFV 98
           L     KCKEGET++ PS+LEFEARS+KDGAWYDVEAFLAHRF+
Sbjct: 332 LMVP--KCKEGETMQHPSELEFEARSSKDGAWYDVEAFLAHRFL 457


>TC219994 
          Length = 741

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +3

Query: 40  TEARIQDLPEVPENNLESSQ------GKCKEGETIRDPSQLEFEARSTKD 83
           ++A    +  +P N +  S+      G C + +T+RD   L  E   TKD
Sbjct: 300 SDAMWSQMSHIPSNTVSESRSGSTMLGNCFQHQTMRDAELLNLETARTKD 449


>AW348865 similar to SP|P49730|RIR2 Ribonucleoside-diphosphate reductase
           small chain (EC 1.17.4.1) (Ribonucleotide reductase),
           partial (60%)
          Length = 718

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 21/79 (26%), Positives = 30/79 (37%)
 Frame = +3

Query: 41  EARIQDLPEVPENNLESSQGKCKEGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGT 100
           E R+Q+  EV    L S      EGE    P+ LE + R+   G  Y ++A   H  +  
Sbjct: 459 EKRVQETREVAVKPLISRDEFVGEGEPRH*PTLLEPKYRAKASGEEYSLDASECHXXLRX 638

Query: 101 GEAEVRVRFVGFGASEDEW 119
               +       G   D W
Sbjct: 639 XFXXIDPAXXPLGFFGDAW 695


>BE805264 
          Length = 445

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
 Frame = +2

Query: 35  PTVKWTEAR-IQDLPEVPENNLESSQGKCKEGETIRDPSQLEF 76
           P V  +E+  +Q +  +PE+ LESS G     + + DP+   F
Sbjct: 95  PPVNISESEELQPVSIIPESPLESSSGAASAIDAVEDPAFTNF 223


>TC217580 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (74%)
          Length = 2139

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (46%)
 Frame = +1

Query: 122 IKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDI 174
           IKD+    +   +S   S LN+ D  L    R DQA+   AR L   RR  ++
Sbjct: 268 IKDARSLIATQDQSEIASALNLVDAALAISPRFDQALELRARALLYLRRFKEV 426


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,295,802
Number of Sequences: 63676
Number of extensions: 101551
Number of successful extensions: 382
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of query: 203
length of database: 12,639,632
effective HSP length: 93
effective length of query: 110
effective length of database: 6,717,764
effective search space: 738954040
effective search space used: 738954040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)