BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0331a.1
(602 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 57 2e-08
TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, part... 44 3e-04
NP004897 gag-protease polyprotein 40 0.004
CK606020 40 0.004
AW396581 39 0.007
TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-in... 39 0.007
BF010312 39 0.009
TC204528 38 0.011
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 38 0.015
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 37 0.019
TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere au... 36 0.056
TC215250 similar to UP|REMO_SOLTU (P93788) Remorin (pp34), parti... 35 0.073
TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, part... 35 0.073
TC216047 weakly similar to UP|IF3A_ARATH (Q9LD55) Eukaryotic tra... 35 0.073
TC207639 similar to UP|O48592 (O48592) GT2 protein, partial (24%) 35 0.073
TC225618 similar to UP|Q9LSQ5 (Q9LSQ5) 1,4-benzoquinone reductas... 35 0.096
TC226970 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-li... 35 0.096
TC212752 weakly similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific... 35 0.096
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 35 0.12
TC204347 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zip... 35 0.12
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 57.0 bits (136), Expect = 2e-08
Identities = 77/356 (21%), Positives = 149/356 (41%), Gaps = 14/356 (3%)
Frame = +1
Query: 253 KRNLSYFVAKMSRLSEDDILRFRREQQALKKKQSPAKSLTEPEGSHSETE-----KNPAP 307
K + FV K L D+L + + +KK++ AK L E H+ T+ K
Sbjct: 760 KEKIDKFV-KEKLLDFCDVLNIQINKTNMKKEELSAKLLEFLESPHATTDILLADKEQKG 936
Query: 308 KRRKKNQSSEKTAEKATIQTPL--EKFTTKGANQYGSSSAPPPSWKNELKEFEDMTSEEI 365
K+R + K+ +A+ +TP +K T++ + SS K EL + + ++ E+
Sbjct: 937 KKRTRKSVPSKSPGEASTETPAKKQKQTSQSGKKQKQSSDDDEDDKAELSDAKGVSQEDE 1116
Query: 366 TSLWDSRINFNSLVETNLVFEADKEKMRKIGLQEACQAVMTKSLEIAAISKMIEIESSHF 425
+ N + E+ E +K K RK K+++ +++SK S
Sbjct: 1117 DVAVPN--NESDDEESRSEEEEEKSKSRK--------RTSKKAVKESSVSKADRTSSVKK 1266
Query: 426 DGLSNAKKLEDKEKENEKLKSTMKLLEKSNKANEKKAADLALELEKLKKTVEEGEALLKA 485
+ +AK +E +K+ K + S ++ K + +K +G+A K
Sbjct: 1267 TPVKDAKSIEKTKKKPTSKKGVAEHDSASASVSKSKQPASKKQKTASEKQDTKGKAASKK 1446
Query: 486 KEEETQK--MKEEANSLASEKQILNKTVDDLTAETTSLKASILSQLEAGFNKAKEQILFL 543
+ +++ K +K++ S +++K T D+ A + E FN A +
Sbjct: 1447 RTDKSSKALVKDQGKSKSNKKAKAEPTKQDMHAVVVDILK------EVDFNTATLSDILR 1608
Query: 544 NPDVPIKTEGVDPYARIIEGK-----LITPNFDEEEEEEEQEEEEDKENNNNNNNN 594
G+D R E K +I DEE+EE E + + DK+++ +++++
Sbjct: 1609 QLGTHF---GLDLMHRKAEVKDIITDVINNMSDEEDEEAENDGDADKDDDGDDDDD 1767
Score = 40.8 bits (94), Expect = 0.002
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Frame = +1
Query: 435 EDKEKENEKLKSTM------KLLE-------KSNKANEKKAADLALELEKLKKTVEEGEA 481
E+++K+ K+K + KLL+ + NK N KK A LE L+ +
Sbjct: 730 ENEDKQRAKIKEKIDKFVKEKLLDFCDVLNIQINKTNMKKEELSAKLLEFLESPHATTDI 909
Query: 482 LLKAKEEETQKMKEEANSLASEKQILNKTVDDLTAETTSLKASILSQLEAGFNKAKEQIL 541
LL KE++ +K + K + +K+ + + ET + K SQ K+Q
Sbjct: 910 LLADKEQKGKKR--------TRKSVPSKSPGEASTETPAKKQKQTSQ------SGKKQKQ 1047
Query: 542 FLNPDVPIKTEGVDPYARIIEGK-LITPNFDEEEEEEEQEEEEDKENNNNNNNNK 595
+ D K E D E + + PN + ++EE EEEE+K + + K
Sbjct: 1048SSDDDEDDKAELSDAKGVSQEDEDVAVPNNESDDEESRSEEEEEKSKSRKRTSKK 1212
>TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, partial (3%)
Length = 1311
Score = 43.5 bits (101), Expect = 3e-04
Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 13/255 (5%)
Frame = +3
Query: 284 KQSPAKSLTEPEGSHSETEKNPAPKRRKKNQSSEKTAEKA----------TIQTPLEKFT 333
+ S + ++P SH E N + + SS + KA T T ++KF
Sbjct: 57 RSSTSSHFSDPSSSH---EFNNLKTKTSSSSSSSRALVKAKPSNTAKVDPTFTTMVKKFM 227
Query: 334 TKGANQYGSSSAPPPSWKNELKEFEDMTSEEITSLWDSRINFNSLVETNLVFEADKEKMR 393
+ P S L D ++++ F++L + A ++K +
Sbjct: 228 DR---------KPKSSTATRLIIPSDSLAKDLKKDAKKVAGFSALQKKLFGKGASEKKEK 380
Query: 394 KIGLQEACQAVMTKSLEIAAISKMIEIESSHFDGLSNAKK-LEDKEKENEKLKSTMKLLE 452
L E T ++ + + +++ I +S K+ LEDK KE EKLK L+
Sbjct: 381 VKALTEVKNNTRTLAMVLRSERELLSINKEQEQQVSQLKQMLEDKNKEVEKLKDL--CLK 554
Query: 453 KSNKANEKKAADLALEL--EKLKKTVEEGEALLKAKEEETQKMKEEANSLASEKQILNKT 510
+ + K+A L ++ +L++ +E+ + LK ++ ++++ +SL + Q L +
Sbjct: 555 QREEIKSLKSAILFPDVMNSQLQELLEKQGSELKQAKQVIPALQQQVSSLTGQLQSLAED 734
Query: 511 VDDLTAETTSLKASI 525
+ ++ A+ S KA +
Sbjct: 735 LAEVKADKYSAKAGL 779
>NP004897 gag-protease polyprotein
Length = 1923
Score = 39.7 bits (91), Expect = 0.004
Identities = 38/166 (22%), Positives = 74/166 (43%), Gaps = 6/166 (3%)
Frame = +1
Query: 391 KMRKIGLQEACQAVMTKSLEIAAISKMIEIESSHFDGLSNAKKLEDKEKENEKLKSTMKL 450
K ++ GL C++ T+S + + + + + F+ ++ + + +E S +L
Sbjct: 958 KKQRKGLS-VCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELATSYREL 1134
Query: 451 LEKSNKANEKKAADLALELEKLKKTVEEGEALLKAKEEETQKMKEEANSLASEKQILNKT 510
KS K +++A +LKK + EA +A EEE ++K E L S+ + + K+
Sbjct: 1135 CIKSEKILQQEA--------QLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKS 1290
Query: 511 V------DDLTAETTSLKASILSQLEAGFNKAKEQILFLNPDVPIK 550
+ D+ E L ++ +Q GFN + + VP K
Sbjct: 1291 IKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSAGRITMTEFVPAK 1428
>CK606020
Length = 340
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 566 ITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
I P+ DEEEEEEE+EEEE++E +E E E
Sbjct: 181 IDPSLDEEEEEEEEEEEEEEEEEEEEIEEEEEEEE 285
Score = 33.9 bits (76), Expect = 0.21
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 545 PDVPIKTEG-VDPYARIIEGKLITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
PD P+ + +DP + +EEEEEEE+EEEE++E +E E E
Sbjct: 151 PDSPVANDDEIDPS--------LDEEEEEEEEEEEEEEEEEEEEIEEEEEEEEEEVE 297
>AW396581
Length = 401
Score = 38.9 bits (89), Expect = 0.007
Identities = 24/94 (25%), Positives = 51/94 (53%), Gaps = 4/94 (4%)
Frame = -1
Query: 415 SKMIEIESSHFDGLSNAKKLEDKEKENEKLKSTMKLL----EKSNKANEKKAADLALELE 470
S +I+++ + K+ + KEK+++ K+ ++ + +K K EKK D + E
Sbjct: 383 SLLIKVKEHDGEDAEEKKEKKKKEKKDKDDKTDVEKVKGKEDKEKKKKEKKVKDDKTDAE 204
Query: 471 KLKKTVEEGEALLKAKEEETQKMKEEANSLASEK 504
K+K ++GE + +E++ +K KE+ + + EK
Sbjct: 203 KVKGKEDDGEDNEEKEEKKKKKKKEKDDKIDVEK 102
>TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-infected
erythrocyte surface antigen, partial (5%)
Length = 858
Score = 38.9 bits (89), Expect = 0.007
Identities = 49/224 (21%), Positives = 91/224 (39%), Gaps = 9/224 (4%)
Frame = +1
Query: 386 EADKEKMRKIGLQEACQAVMTKSLEIAAISKMI-EIESSHFDGLSNAKKLEDKEKENEKL 444
EA+ E + Q + +++S+ + ++ ++ + L KKL + N +L
Sbjct: 172 EAEAENIEAEKAQSGVEDKISQSVSFKEETNVVGDLPEAQKKALDELKKLVQEALNNHEL 351
Query: 445 KSTMKLLEKSNKANEKKAADLALELEKLKKTVEEG---EALLKAKEEETQKMKEEANSLA 501
+ EK A EKK E +K + +EE E + KE E + K+EA +
Sbjct: 352 TAPKPEPEKKKPAAEKKEEVEVTEGKKEAEVIEEKKEVEVTEEKKEIEVTEEKKEAEVIE 531
Query: 502 SEKQILNKTVDDLTAETTSLKASILSQLEAGFNKAKEQILFLNPDVPIKTEGVDPYARII 561
+K++ T + E T K + E K + ++ +V + E + +
Sbjct: 532 EKKEV-EVTEEKKEIEVTEEK----KEAEVKEEKKEGEVTEEKKEVEVTEEKKEAEVIVE 696
Query: 562 EGKLITPNFDEEEEE-----EEQEEEEDKENNNNNNNNKEGEGE 600
E K + +++E E +E E E+K+ KE E E
Sbjct: 697 EKKEVEVTEEKKEVEVTEGKKEVEVIEEKKETEVTEEKKEVEVE 828
>BF010312
Length = 415
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 195 KDVFYFDDGTPRFPFYWTDKPQLIHNIPESSLSPDEKYEVDFLS 238
K+ FY G P FPFYW P+ P+ LS D++ +++ LS
Sbjct: 218 KNFFYDLAGNPLFPFYWKQCPRWYDKYPKELLSTDKRQDLETLS 349
>TC204528
Length = 793
Score = 38.1 bits (87), Expect = 0.011
Identities = 34/144 (23%), Positives = 64/144 (43%), Gaps = 16/144 (11%)
Frame = +2
Query: 408 SLEIAAISKMIEIESSHFDGLSNAKKLEDKEKENEKLKSTMKLLEKSNKANEKKAA---- 463
SL+ + K + ES G ++ +++ N+K +LE A KAA
Sbjct: 305 SLKESGSKKRVRSESCAASGSKACREKLRRDRLNDKFVELGAILEPGRPAKTDKAAILID 484
Query: 464 ------DLALELEKLKKTVEEGEALLKAKEEETQKMKEEANSLASEKQILNKTVDDLTAE 517
L E +KLK T + + +K + E ++++E L +EK+ L + + L A+
Sbjct: 485 AVRMVTQLRGEAQKLKDTNQGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQ 664
Query: 518 TT------SLKASILSQLEAGFNK 535
+ ++ A+ +Q +A NK
Sbjct: 665 PSFMPPPAAMPAAFAAQGQAHGNK 736
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 37.7 bits (86), Expect = 0.015
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 6/166 (3%)
Frame = +1
Query: 391 KMRKIGLQEACQAVMTKSLEIAAISKMIEIESSHFDGLSNAKKLEDKEKENEKLKSTMKL 450
K ++ GL C++ T+S + + + + + F+ ++ + + +E S +L
Sbjct: 958 KKQRKGLS-VCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELAISYREL 1134
Query: 451 LEKSNKANEKKAADLALELEKLKKTVEEGEALLKAKEEETQKMKEEANSLASEKQILNKT 510
KS K +++A +LKK + EA +A EEE ++K E L S+ + + K+
Sbjct: 1135 CIKSEKILQQEA--------QLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKS 1290
Query: 511 V------DDLTAETTSLKASILSQLEAGFNKAKEQILFLNPDVPIK 550
+ D+ E L ++ +Q GFN + VP K
Sbjct: 1291 IKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSAGRTTMTEFVPAK 1428
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 37.4 bits (85), Expect = 0.019
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+EEEE++E +E E E N
Sbjct: 43 EEEEEEEEEEEEEEEEEEEEEEKEEEEEEEGN 138
Score = 35.0 bits (79), Expect = 0.096
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
++EEEEEE+EEEE++E KE E E
Sbjct: 37 EKEEEEEEEEEEEEEEEEEEEEEEKEEEEE 126
Score = 33.9 bits (76), Expect = 0.21
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 567 TPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
T +EE+EEEE+EEEE++E +E E E
Sbjct: 19 TQEEEEEKEEEEEEEEEEEEEEEEEEEEEEKEEE 120
Score = 32.7 bits (73), Expect = 0.47
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
D +EEEEE+EEEE++E +E E E
Sbjct: 16 DTQEEEEEKEEEEEEEEEEEEEEEEEEEEE 105
Score = 32.0 bits (71), Expect = 0.81
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+E+EEEEE+EEEE++E ++ E E
Sbjct: 34 EEKEEEEEEEEEEEEEEEEEEEEEEKEEEE 123
>TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (5%)
Length = 710
Score = 35.8 bits (81), Expect = 0.056
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 565 LITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGES 601
L P +EEEEEEE+EE E++E +E E S
Sbjct: 412 LAEPEEEEEEEEEEEEENEEEEEEEEGEEEEEEEARS 522
Score = 33.9 bits (76), Expect = 0.21
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 568 PNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
P E EEEEE+EEEE++E N +EGE E
Sbjct: 406 PALAEPEEEEEEEEEEEEE-NEEEEEEEEGEEE 501
Score = 31.6 bits (70), Expect = 1.1
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+ EEE++E +E N
Sbjct: 436 EEEEEEEEENEEEEEEEEGEEEEEEEARSMVN 531
>TC215250 similar to UP|REMO_SOLTU (P93788) Remorin (pp34), partial (67%)
Length = 1148
Score = 35.4 bits (80), Expect = 0.073
Identities = 33/127 (25%), Positives = 58/127 (44%), Gaps = 4/127 (3%)
Frame = +1
Query: 383 LVFEADKEKMRKIGLQEACQAVMTKSLEIAAISKMIEIESSHFDGLSNAKKLEDKEKENE 442
+V E + EK+ + + A + + + +A I K LSN K E+ EK
Sbjct: 292 VVVEKENEKIPEPVKKNASGGSLDRDIALAEIEKEKR--------LSNVKAWEESEKSKA 447
Query: 443 KLKSTMKLLEKSNKANEKKAADLALELEKLKKTVEEGEA----LLKAKEEETQKMKEEAN 498
+ K+ +L + N KKAA L +L K+++ +E+ +A +K K K EE
Sbjct: 448 ENKAQKQLSAVAAWENSKKAA-LEAQLRKIEEQLEKKKAEYGEKMKNKIALVHKQAEEKR 624
Query: 499 SLASEKQ 505
++ K+
Sbjct: 625 AMVEAKR 645
>TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (53%)
Length = 1127
Score = 35.4 bits (80), Expect = 0.073
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEE +EE++ +E N GEGE N
Sbjct: 676 EEEEEEEAKEEKKAEEEGEKKNEKGSGEGEEN 771
Score = 33.9 bits (76), Expect = 0.21
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 19/171 (11%)
Frame = +1
Query: 449 KLLEKSNKANEKKAADLALELEKLKKTVEEGEALLKAKEEETQKMKEEANSLASEKQILN 508
K++ K KA+ K + K + VE + K EE +K +EE E +
Sbjct: 277 KVVVKGEKADPLKVLERVQR--KSHRKVELLSPIPKPPAEEAKKPQEEEKPKPEENKQEP 450
Query: 509 KTVDDLTAETTSLKASILSQLEAGFNKAKEQILFLN------PDVP---IKTEGVDPYAR 559
+ + T LK + EA + K +I + PD+ + +GV A+
Sbjct: 451 QVI------TVVLKVHM--HCEACAQEIKRRIEKMKGVESAEPDLKKSEVSVKGVFETAK 606
Query: 560 IIE------GK----LITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
++E GK + F EEEEEE+ +EE K N++G GE
Sbjct: 607 LVEHVYKRTGKHAVIVKEEPFMREEEEEEEAKEEKKAEEEGEKKNEKGSGE 759
Score = 30.0 bits (66), Expect = 3.1
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 14/183 (7%)
Frame = +1
Query: 433 KLEDKEKENEKLKSTMKLLEKSNKANEKKAADLALELEKLKKTVEEGEALLKAKEEETQ- 491
K+ K ++ + LK ++ KS++ E + E+ KK EE + + ++E Q
Sbjct: 277 KVVVKGEKADPLKVLERVQRKSHRKVELLSPIPKPPAEEAKKPQEEEKPKPEENKQEPQV 456
Query: 492 -----KMKEEANSLASEKQILNKTVDDLTAETTSLKASILSQLEAGFNKAKEQILFLNPD 546
K+ + A E + + + + + LK S +S ++ F AK L
Sbjct: 457 ITVVLKVHMHCEACAQEIKRRIEKMKGVESAEPDLKKSEVS-VKGVFETAK-----LVEH 618
Query: 547 VPIKTEGVDPYARIIEGKLITPNFDEEEEEEEQ---EEEEDKENNNNN-----NNNKEGE 598
V +T +A I++ + +EEEE +E+ EEE +K+N + N K+GE
Sbjct: 619 VYKRT---GKHAVIVKEEPFMREEEEEEEAKEEKKAEEEGEKKNEKGSGEGEENKEKKGE 789
Query: 599 GES 601
GE+
Sbjct: 790 GEA 798
>TC216047 weakly similar to UP|IF3A_ARATH (Q9LD55) Eukaryotic translation
initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic
translation initiation factor 3 large subunit) (eIF3a)
(p114), partial (22%)
Length = 664
Score = 35.4 bits (80), Expect = 0.073
Identities = 36/180 (20%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Frame = +2
Query: 428 LSNAKKLEDKEKENEKLKSTMKLLEKSNKANEKKAADLALELEKLKKTVEEGEALLKAKE 487
L+ ++L ++++ +KL+ K ++ +A ++AA L +E ++ VEE + ++
Sbjct: 80 LTLTEQLRERQEMEKKLQKLAKTMDHLERAKREEAAPL-IEAAYQQRLVEERLLHDREQQ 256
Query: 488 EETQKMKEEANSLASEKQILNKTVDDLTAETTSLKASILSQLEAGFNKAKEQ-------I 540
+E + K+ EK+ L + + +A ++S +A FN+ + + I
Sbjct: 257 QEVELSKQRHEGDLKEKERLVR----MMGNKEIYQARVVSHRQAEFNRLRREREERISRI 424
Query: 541 LFLNPDVPIKTEGVDPYARIIEGKLITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
L K + Y ++ EEE +++ EEE+ + K+ E E
Sbjct: 425 LQSRRQEREKMRKLKYYLKL-----------EEERQQKLHEEEEARKREDAERKKKEEEE 571
>TC207639 similar to UP|O48592 (O48592) GT2 protein, partial (24%)
Length = 1689
Score = 35.4 bits (80), Expect = 0.073
Identities = 15/29 (51%), Positives = 21/29 (71%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEG 599
+EEE+EEE+EEEE+ EN + + E EG
Sbjct: 928 EEEEDEEEEEEEEEDENEEGDLESVEDEG 1014
Score = 33.1 bits (74), Expect = 0.36
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
EEEEE+E+EEEE++E+ N + + E E
Sbjct: 925 EEEEEDEEEEEEEEEDENEEGDLESVEDE 1011
Score = 31.6 bits (70), Expect = 1.1
Identities = 12/26 (46%), Positives = 19/26 (72%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKE 596
+ EEEEE++EEEE++E + N + E
Sbjct: 919 EREEEEEDEEEEEEEEEDENEEGDLE 996
Score = 30.4 bits (67), Expect = 2.4
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 569 NFDEEEEEEEQEEEEDKENNNNNNNNKEGEGES 601
N +E EEEE++EEE++E + N+EG+ ES
Sbjct: 907 NERKEREEEEEDEEEEEE--EEEDENEEGDLES 999
Score = 28.5 bits (62), Expect = 8.9
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEG 597
++EEEEEE+EE+E++E + + ++ G
Sbjct: 937 EDEEEEEEEEEDENEEGDLESVEDEGG 1017
>TC225618 similar to UP|Q9LSQ5 (Q9LSQ5) 1,4-benzoquinone reductase-like; Trp
repressor binding protein-like (1,4-benzoquinone
reductase-like protein), partial (75%)
Length = 1864
Score = 35.0 bits (79), Expect = 0.096
Identities = 11/30 (36%), Positives = 22/30 (72%)
Frame = -2
Query: 569 NFDEEEEEEEQEEEEDKENNNNNNNNKEGE 598
N D+++++++ +++ NNNNNNNNK +
Sbjct: 705 NEDDDDDDDDGDDDGSSNNNNNNNNNKRSK 616
>TC226970 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-like, partial
(25%)
Length = 1300
Score = 35.0 bits (79), Expect = 0.096
Identities = 32/147 (21%), Positives = 59/147 (39%), Gaps = 2/147 (1%)
Frame = +1
Query: 421 ESSHFDGLSNAKKLEDKEKENEKLKSTMKLLEKSNKANEKKAADLALELEKLKKTVEEGE 480
E FDG N + E + K NK + K ++D + + +KK G
Sbjct: 25 EHGAFDGQENGSAASRENSEANGVVKEKKSWFGWNKKSLKSSSDDPEDSKAVKKNSRFGS 204
Query: 481 ALLKAKEEETQKMKEEANSLASEKQILNKTVDDLTAETTSLKASIL--SQLEAGFNKAKE 538
+ + K+ A+ E + ++ D + K + S+ E+ + K
Sbjct: 205 EGSNQRSADQPKL---ASDFLREDSVDSRKGKDKNIKKKKKKGANNNESKNESEYKKGLR 375
Query: 539 QILFLNPDVPIKTEGVDPYARIIEGKL 565
+L+L PD P+KT+ + P I+ K+
Sbjct: 376 PVLWLTPDFPLKTDELLPLLDILANKV 456
>TC212752 weakly similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific protein T2
precursor, partial (35%)
Length = 533
Score = 35.0 bits (79), Expect = 0.096
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGES 601
DE EEEEE+EEEE++E ++ EGE ES
Sbjct: 72 DESEEEEEEEEEEEEEVWDDWEGEDEGERES 164
Score = 31.2 bits (69), Expect = 1.4
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = +3
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
D++E EEE+EEEE++E ++ E EGE
Sbjct: 66 DDDESEEEEEEEEEEEEEVWDDWEGEDEGE 155
Score = 29.6 bits (65), Expect = 4.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+E+++E E+EEEE++E ++ EGE E
Sbjct: 60 EEDDDESEEEEEEEEEEEEEVWDDWEGEDE 149
Score = 29.3 bits (64), Expect = 5.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
EEEEEEE+EEEE+ ++ + E E E
Sbjct: 81 EEEEEEEEEEEEEVWDDWEGEDEGERESE 167
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/58 (32%), Positives = 30/58 (50%)
Frame = +2
Query: 543 LNPDVPIKTEGVDPYARIIEGKLITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
L+ + P+K + P E + + +EEE EEE EEEE++E + +E E E
Sbjct: 65 LSTEPPLKQQQPKPENPPQEYEEVEEEVEEEEVEEEVEEEEEEEEEDEEEEEEEEEEE 238
Score = 33.1 bits (74), Expect = 0.36
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 561 IEGKLITPNFDEEEEEEEQEEEEDKENNNNNNNN 594
+E + + +EEEEEEE++EEE++E N
Sbjct: 146 VEEEEVEEEVEEEEEEEEEDEEEEEEEEEEEEEN 247
Score = 32.7 bits (73), Expect = 0.47
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+E+EEEEE+EEEE++EN+ ++ + E +
Sbjct: 197 EEDEEEEEEEEEEEEENDVVKQQQQQQQDEDD 292
Score = 32.3 bits (72), Expect = 0.62
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKE 596
+EEEEE+E+EEEE++E N+ K+
Sbjct: 185 EEEEEEDEEEEEEEEEEEEENDVVKQ 262
Score = 32.3 bits (72), Expect = 0.62
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNN 594
+EEEEEEE EEEE++E N+
Sbjct: 179 EEEEEEEEDEEEEEEEEEEEEEND 250
Score = 32.3 bits (72), Expect = 0.62
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +2
Query: 561 IEGKLITPNFDEEEEEEEQEEEEDKENNNNNNNNKE 596
+E ++ +EE EEEE+EEEED+E +E
Sbjct: 134 VEEEVEEEEVEEEVEEEEEEEEEDEEEEEEEEEEEE 241
>TC204347 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein
56, partial (71%)
Length = 2071
Score = 34.7 bits (78), Expect = 0.12
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 16/193 (8%)
Frame = +1
Query: 423 SHFDGLSNAKKLEDKEKENEK--------LKSTMKLLEKSNKANEKKAADLALELEKLKK 474
S DGL +E+ ++EK +K+ K E NK ++ LA EL +
Sbjct: 718 SMLDGLDEEGCVEEPGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPR 897
Query: 475 TV----EEGEALLKAKEEETQK--MKEEANSLASEKQILNKTVDDLTAETTSLKASILSQ 528
V + A K K+ E +K ++L L++ + L + LK+ +L +
Sbjct: 898 QVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFDTLDQDNEALRKQVKELKSRLLQE 1077
Query: 529 LEAGFN--KAKEQILFLNPDVPIKTEGVDPYARIIEGKLITPNFDEEEEEEEQEEEEDKE 586
G + KE+I+ T D + +E P+ + E EED
Sbjct: 1078ENTGGSGVSVKEEII---------TRPADSEDKTMEQSKSDPSSETSNINPSSESEEDHL 1230
Query: 587 NNNNNNNNKEGEG 599
N NNN + G
Sbjct: 1231NYECFNNNDDCVG 1269
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,156,567
Number of Sequences: 63676
Number of extensions: 378007
Number of successful extensions: 5451
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 2990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4254
length of query: 602
length of database: 12,639,632
effective HSP length: 103
effective length of query: 499
effective length of database: 6,081,004
effective search space: 3034420996
effective search space used: 3034420996
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0331a.1