TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0320b.5
         (930 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja...   165  3e-46
BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...   147  3e-35
TC213121                                                               65  1e-10
TC224067                                                               40  0.005
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    35  0.20
TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)                  33  0.44
TC227279                                                               32  1.3
TC213279 similar to UP|TRSF_DROHY (Q23949) Female-specific trans...    29  8.4
TC209122 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, part...    29  8.4
AW349343 weakly similar to GP|15912305|gb AT4g18900/F13C5_70 {Ar...    29  8.4

>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
           cultivar-group)}, partial (5%)
          Length = 617

 Score =  165 bits (418), Expect(2) = 3e-46
 Identities = 88/156 (56%), Positives = 112/156 (71%)
 Frame = +2

Query: 479 GSGKTFVWNTLSAALRSEGKIVLNVASSGIASLLLPGGRTAHSRFSIPITIHESSTCNVR 538
           G+ KTF+W TLSA +RS+G ++ +     +ASLLLP G TAHS FSIP+ I + STCN+ 
Sbjct: 11  GTSKTFLWKTLSAGMRSKG-LMSSSCLKRLASLLLPRG*TAHSTFSIPLVIKDDSTCNIN 187

Query: 539 QGSHKAEMLQKASLIIWDEAPMLNKHCFEALDKTLNDIMKTQATFGHDKPFAGKVVVLGG 598
           QGS ++++L    LIIWDE P++NK CFEALD+TL DIM +Q      KPF GK VVLGG
Sbjct: 188 QGSARSKLLLHTKLIIWDETPVMNKFCFEALDRTLQDIMASQNKDNATKPFGGK-VVLGG 364

Query: 599 DFRQILPVILKGSRSEIISSSANSSYLWKHCKVMKL 634
           DFRQILPVI KGSR +I+ S+ N+S      KV+KL
Sbjct: 365 DFRQILPVIRKGSRQDIVGSAINASK-----KVLKL 457



 Score = 39.7 bits (91), Expect(2) = 3e-46
 Identities = 23/57 (40%), Positives = 32/57 (55%)
 Frame = +1

Query: 637 NMRLQQAGSSSSSLEIKEFADWLLQVGDGTIKPIDEDDSIIEIPTYLLVRESDNPLL 693
           NMRL    ++    +I+EF DW+L + DG     +ED+  I+IP  LL     NPLL
Sbjct: 463 NMRLGTTNNNEDRDDIREFVDWILMIRDGNRD--EEDEGEIDIPKNLL-----NPLL 612


>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score =  147 bits (370), Expect = 3e-35
 Identities = 74/137 (54%), Positives = 97/137 (70%), Gaps = 3/137 (2%)
 Frame = +2

Query: 754 DEDSEIDAEWF---TSEFLNDLKCSGIPNHRIVLKVGVPIMLIQNIDQSAGLCNGTRLIV 810
           ++   I++E F   T+EF+N L  S +PNH+I LKV   IML++N+DQ+ GLCN TRLI+
Sbjct: 14  EKSDTIESEGFSTITTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNSTRLII 193

Query: 811 SALTPYIIVATALSGSKTGKPVYIPRLSLTPSDTGLPFKFSRRQFPITVCFAMTINKSQG 870
           +    +II A  +SG   G  VYIPRL+ +PS +  PFK  RR+FPI V +AMTINKSQG
Sbjct: 194 TMFADHIIEAKIMSGKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTINKSQG 373

Query: 871 QSLSHVGLYLPRPVFTH 887
           Q L+ VGLYLP PVF+H
Sbjct: 374 QLLASVGLYLPTPVFSH 424


>TC213121 
          Length = 713

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 29/44 (65%), Positives = 36/44 (80%)
 Frame = +2

Query: 472 FFLYGFGGSGKTFVWNTLSAALRSEGKIVLNVASSGIASLLLPG 515
           +FLYG+GG+GKTFVW TLS+ + S   IVL +ASSGI S+LLPG
Sbjct: 479 YFLYGYGGTGKTFVWKTLSSTIHSNSGIVLTMASSGILSMLLPG 610


>TC224067 
          Length = 415

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
 Frame = -2

Query: 859 VCFAMTINKSQGQSLSHV-GLYLPRPV-FTHGQLYVALSRVKSRKRLK 904
           VC+ M INKS GQ+LS V G+ LPRP   +HGQ YV L++V S  R K
Sbjct: 360 VCYTMKINKSHGQTLSQVGGVLLPRPN**SHGQ-YVTLNQV*SY*RRK 220


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and
           recombination protein PIF1, mitochondrial precursor,
           partial (8%)
          Length = 596

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 21/45 (46%), Positives = 29/45 (63%)
 Frame = +2

Query: 861 FAMTINKSQGQSLSHVGLYLPRPVFTHGQLYVALSRVKSRKRLKI 905
           +AM+I+K QG +L  V   L R  F  G +YVALSRV+S + L +
Sbjct: 5   WAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRSLEGLHL 136


>TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)
          Length = 340

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -3

Query: 855 FPITVCFAMTINKSQGQS 872
           FP+ VCFAMT NKS+GQ+
Sbjct: 326 FPLIVCFAMTTNKSEGQT 273


>TC227279 
          Length = 767

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +2

Query: 458 PRYWMLFR-PITEDFFFLYGFGGS-GKTFVWNTLSAA--LRSEGKIVLNVASSGIASLLL 513
           PR  ++F+   +ED  FL   GGS GK  VW+TLS A   R  G    N + SG  S  L
Sbjct: 323 PRAGVIFKISFSEDNPFLLAIGGSKGKLQVWDTLSDAGISRRYGNSNKNRSQSGS*SCSL 502

Query: 514 PGGRTAHSRFSIPITIHES 532
           P  RTA       + +H+S
Sbjct: 503 P-SRTAQ------VVLHKS 538


>TC213279 similar to UP|TRSF_DROHY (Q23949) Female-specific transformer
           protein, partial (11%)
          Length = 481

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 850 FSRRQFPITVCFAMTINKSQGQSLSHVGLYLPRPVFTHGQLYVALSRVK-SRKRLKILIV 908
           FS + F +         +S       + L LPR VF H  + +AL R   SR+ L +LIV
Sbjct: 364 FSLQLFDLLALICTVAPQSVELRRQLLDLLLPRHVFAHQLVALALQRRDLSRRFLAVLIV 185

Query: 909 DDKGVVSNCTRN 920
           D   V +   R+
Sbjct: 184 DAAAVGNTFVRH 149


>TC209122 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, partial (28%)
          Length = 692

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = -1

Query: 741 ETKYLSYDTPCRSDEDS-EIDAEWFTSEFLNDLKCSGIPNHRIVLKV-GVPIMLIQNIDQ 798
           E KYL   TP + + D   +    F SE L DL C   P   + LK   VP+ L     +
Sbjct: 266 ELKYLG-STPLKKERDDIAVGLARFASEVLCDLSCPNSPESTLRLKT*TVPLSL-----E 105

Query: 799 SAGLC---NGTRLIVSALT 814
           +A  C      RL +SAL+
Sbjct: 104 TASHCAVGEKARLYISALS 48


>AW349343 weakly similar to GP|15912305|gb AT4g18900/F13C5_70 {Arabidopsis
           thaliana}, partial (23%)
          Length = 618

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 29/78 (37%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
 Frame = -2

Query: 458 PRYWMLFR-PITEDFFFLYGFGGS-GKTFVWNTLS-AALRSEGKIVLNVASSGIASLLLP 514
           PR  ++F+   +ED  FL   GGS GK  VW+TLS A +        N + SG  S  LP
Sbjct: 398 PRAGVIFKISFSEDNPFLLAIGGSKGKLQVWDTLSDAGISRRYGNYKNRSQSGS*SCSLP 219

Query: 515 GGRTAHSRFSIPITIHES 532
             RTA       + +H+S
Sbjct: 218 -SRTAQ------VVLHKS 186


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.344    0.151    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,610,033
Number of Sequences: 63676
Number of extensions: 535892
Number of successful extensions: 4752
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3544
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 3770
length of query: 930
length of database: 12,639,632
effective HSP length: 106
effective length of query: 824
effective length of database: 5,889,976
effective search space: 4853340224
effective search space used: 4853340224
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 63 (28.9 bits)