BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0320a.8
(1611 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 536 e-152
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 533 e-151
CO982036 217 3e-56
BU548243 185 1e-46
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 169 9e-42
BE211208 166 8e-41
CO982898 93 3e-40
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 112 4e-39
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 159 9e-39
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 157 5e-38
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 155 1e-37
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 154 2e-37
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 154 3e-37
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 148 2e-35
BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (j... 88 2e-35
BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delal... 145 1e-34
BQ273297 92 1e-32
TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON li... 79 7e-32
CO984748 132 2e-30
BF595216 80 3e-30
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 536 bits (1380), Expect = e-152
Identities = 354/1135 (31%), Positives = 554/1135 (48%), Gaps = 14/1135 (1%)
Frame = +1
Query: 479 SSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSAL---LPSSF 535
S+ W DSG + H+T V+ P S+ + G+G I +G + LPS
Sbjct: 1672 SAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTS-YVTFGDGSKGKITGMGKLVHDGLPS-- 1842
Query: 536 NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
L K+LLV +T NL+S+S+ D +F + C V ++ + E+L+ G+
Sbjct: 1843 -------LNKVLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKS-EVLMKGSRSK 1995
Query: 596 DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
D Y + PQ +S S+ CL SK D
Sbjct: 1996 DNCYLWT---------PQETSYSST---CLFSKE-------------------------D 2064
Query: 656 SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFS--F 713
V + WH R GH H +K+ + + N +
Sbjct: 2065 EVKI---------------------WHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 2181
Query: 714 CKACCLSKLHRLPSSS-SNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTW 772
C C + K ++ + + EL+ DL GP +ES G Y VD +++TW
Sbjct: 2182 CGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTW 2361
Query: 773 VFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFK--PLTSHFQKLGIIHRLTC 830
V +++KSDT F ++ + +K +++D G EF+ T GI H +
Sbjct: 2362 VNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSA 2541
Query: 831 PHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPY 890
T QNG VERK+R + E +L +P W A A Y+ NR++ + Y
Sbjct: 2542 AITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLY 2721
Query: 891 FKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLDQSGRI 950
G+ P K +FGS C+ K+ S +F+GYS N + Y+ + R
Sbjct: 2722 EIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRT 2901
Query: 951 YISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIPIISHTAPPSSPVLAASGHSSPG 1010
+ + + P + E ++ ++ TA A + +S
Sbjct: 2902 VMESINVVVDDLTP---------ARKKDVEEDVRTSGDNVADTAKS-----AENAENSDS 3039
Query: 1011 PQDSPQQQQP---PSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNT 1067
D P QP PS + P ++ P + +S + ++ N+
Sbjct: 3040 ATDEPNINQPDKRPSIRIQKMHPKE---LIIGDPNRGVTTRSREIE---------IVSNS 3183
Query: 1068 HPMQTRAKNGIVKPRLQPTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVP 1127
++ +EP +VK+A+ D W AMQEE N W LVP
Sbjct: 3184 -------------------CFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVP 3306
Query: 1128 LPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLI 1187
P +G KWI++ K N +G I + KARLVA+GY+Q++G D+ ETF+PV + ++RL+
Sbjct: 3307 RPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLL 3486
Query: 1188 LSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGF---EHKDKNLVCKLQKALYGLKQ 1244
L +A + L Q+DV +AFLNG L EE Y+ QP GF H D V +L+KALYGLKQ
Sbjct: 3487 LGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDH--VYRLKKALYGLKQ 3660
Query: 1245 APRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLT 1304
APRAW+ RL E L + G++ D +LF ++ + +YVDDI+ G S +++
Sbjct: 3661 APRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFV 3840
Query: 1305 AQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQC 1364
Q+ S F + +G+L YFLG+QV + + ++ L+Q+KY +++ K M +A+ TP
Sbjct: 3841 QQMQSEFEMSLVGELTYFLGLQVKQMED-SIFLSQSKYAKNIVKKFGMENASHKRTPAPT 4017
Query: 1365 GVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRI 1424
+KLSK+E D + YRS++G+L Y T +RP+I++AV ++ A P H VKRI
Sbjct: 4018 HLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRI 4197
Query: 1425 LRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAK 1484
L+Y+ GT +GI+ CS + L+ YCDADW DDR+STSG C +LG NLISW +K
Sbjct: 4198 LKYVNGTSDYGIMYCHCSDSM---LVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSK 4368
Query: 1485 KQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILH 1544
KQ+ V+ S+ EAEY + ++ ++L+W++ +L E + + T+YCDNMS + ++ NP+ H
Sbjct: 4369 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 4548
Query: 1545 TRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
+RTKH+++ ++R+ V DK + ++HV +E Q ADIFTKAL +F L+ KL +
Sbjct: 4549 SRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGI 4713
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 533 bits (1374), Expect = e-151
Identities = 352/1129 (31%), Positives = 551/1129 (48%), Gaps = 8/1129 (0%)
Frame = +1
Query: 479 SSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPT 538
S+ W DSG + H+T ++ P S+ V G G + IG L P+
Sbjct: 1669 SAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTS---YVTFGDGSKGKIIGMGKLVHDGLPS 1839
Query: 539 ASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGL 598
L K+LLV +T NL+S+S+ D +F + C V ++ + E+L+ G+ D
Sbjct: 1840 ----LNKVLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKS-EVLMKGSRSKDNC 2001
Query: 599 YYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNADSVN 658
Y + PQ +S S+ CL+SK D V
Sbjct: 2002 YLWT---------PQETSYSST---CLSSKE-------------------------DEVR 2070
Query: 659 VSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFS--FCKA 716
+ WH R GH H +K+ + + N + C
Sbjct: 2071 I---------------------WHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGE 2187
Query: 717 CCLSKLHRLPSSS-SNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
C + K ++ + + EL+ DL GP +ES G Y VD +++TWV
Sbjct: 2188 CQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNF 2367
Query: 776 LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKP--LTSHFQKLGIIHRLTCPHT 833
+++KS+T F ++ + +K +++D G EF+ T GI H + T
Sbjct: 2368 IREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAIT 2547
Query: 834 HHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKL 893
QNG VERK+R + E +L +P W A A Y+ NR++ + Y
Sbjct: 2548 PQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIW 2727
Query: 894 YGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLDQSGRIYIS 953
G+ P K +FGS C+ K+ S +F+GYS N + Y+ + R +
Sbjct: 2728 KGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVME 2907
Query: 954 KDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIPIISHTAPPSSPVLAASGHSSPGPQD 1013
I D S + + + S +A + S ++
Sbjct: 2908 S------------INVVVDDLSPARKKD--------VEEDVRTSGDNVADAAKSGENAEN 3027
Query: 1014 SPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPMQTR 1073
S D +T + P SS+ ++ P V T +
Sbjct: 3028 S--------------DSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVE 3165
Query: 1074 AKNGIVKPRLQPTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRT 1133
+ + ++ +EP +VK+A+ D W AMQEE N W LVP P
Sbjct: 3166 IVSN--------SCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTN 3321
Query: 1134 PVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAIS 1193
+G KWI++ K N +G I + KARLVA+GY+Q++G D+ ETF+PV + ++RL+L +A
Sbjct: 3322 VIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACI 3501
Query: 1194 RGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFE---HKDKNLVCKLQKALYGLKQAPRAWF 1250
+ L Q+DV +AFLNG L EEVY+ QP GF H D V +L+KALYGLKQAPRAW+
Sbjct: 3502 LKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDH--VYRLKKALYGLKQAPRAWY 3675
Query: 1251 HRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSI 1310
RL E L + G++ D +LF ++ + +YVDDI+ G S +++ Q+ S
Sbjct: 3676 ERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSE 3855
Query: 1311 FALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSK 1370
F + +G+L YFLG+QV + + ++ L+Q++Y +++ K M +A+ TP +KLSK
Sbjct: 3856 FEMSLVGELTYFLGLQVKQMED-SIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSK 4032
Query: 1371 NEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKG 1430
+E D + YRS++G+L Y T +RP+I++AV ++ A P H VKRIL+Y+ G
Sbjct: 4033 DEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNG 4212
Query: 1431 TLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVA 1490
T +GI+ CS P+ L+ YCDADW DDR+STSG C +LG NLISW +KKQ+ V+
Sbjct: 4213 TSDYGIMYCHCS--NPM-LVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVS 4383
Query: 1491 RSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILHTRTKHM 1550
S+ EAEY + ++ ++L+W++ +L E + + T+YCDNMS + ++ NP+ H+RTKH+
Sbjct: 4384 LSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHI 4563
Query: 1551 EMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
++ ++R+ V DK + ++HV +E Q ADIFTKAL +F L+ KL +
Sbjct: 4564 DIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710
>CO982036
Length = 674
Score = 217 bits (553), Expect = 3e-56
Identities = 113/208 (54%), Positives = 148/208 (70%)
Frame = -2
Query: 1281 IYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQT 1340
+Y+LVYVD IIITG+S +LIQ LT++L+S F LK LG+LDYF+ ++V + + LL +
Sbjct: 652 VYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPD--LLFSLR 482
Query: 1341 KYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEIS 1400
I ++ + A IS+PM KLSK++ PT YRSVVGALQY T+ RPEIS
Sbjct: 481 TSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEIS 302
Query: 1401 FAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSD 1460
FAVNKVCQFM+ P + HW VKRILRYLKG+L++G+ L+P ++PLP+ +CDADW S
Sbjct: 301 FAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASA 122
Query: 1461 PDDRRSTSGSCVFLGYNLISWTAKKQSL 1488
DD+RSTSG+ VFLG NLISW KQ +
Sbjct: 121 VDDKRSTSGAAVFLGPNLISWWXXKQQV 38
>BU548243
Length = 599
Score = 185 bits (470), Expect = 1e-46
Identities = 89/149 (59%), Positives = 108/149 (71%)
Frame = -1
Query: 1451 AYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLW 1510
A CDA W SD DD RST GS +FLG NLISW ++KQ + A+SSTEAEYRS+A T+AEL W
Sbjct: 596 ALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTW 417
Query: 1511 VQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQH 1570
+Q+LL EL+IPFT P + CDN S V + HN + H+RTKHME+D+FFV EKV K L + H
Sbjct: 416 IQALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFH 237
Query: 1571 VPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
+P+ Q A I TK LS RF LK KL V
Sbjct: 236 IPALDQWAGILTKPLSSARFTFLKSKLTV 150
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 169 bits (428), Expect = 9e-42
Identities = 78/133 (58%), Positives = 99/133 (73%), Gaps = 1/133 (0%)
Frame = -2
Query: 1126 VPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVR 1185
VPLP +TPVGC+W+Y +K P G +++ KARLVAKGY+QV G DY +TFSPV K TVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1186 LILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGF-EHKDKNLVCKLQKALYGLKQ 1244
L L++A WPL QLD+ NAFL+G LEE++YM QPPGF + LVCKL ++LYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1245 APRAWFHRLKEVL 1257
+PRAWF + V+
Sbjct: 46 SPRAWFGKFSHVV 8
>BE211208
Length = 413
Score = 166 bits (420), Expect = 8e-41
Identities = 85/129 (65%), Positives = 99/129 (75%)
Frame = +2
Query: 1281 IYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQT 1340
+Y+LVYVDDIIITG S LIQ L L+S F+LKQLGQLDYFLG++V H G++LL Q+
Sbjct: 26 VYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLLTQS 205
Query: 1341 KYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEIS 1400
KYI DLL K +M +A IS+PM ++LSKN L DPT YRSVVGALQY TITRPEIS
Sbjct: 206 KYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPEIS 385
Query: 1401 FAVNKVCQF 1409
FA NKVCQF
Sbjct: 386 FAANKVCQF 412
>CO982898
Length = 816
Score = 93.2 bits (230), Expect(2) = 3e-40
Identities = 44/95 (46%), Positives = 62/95 (64%)
Frame = -1
Query: 881 TTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKG 940
T ++ A PY +L+ Q D+ +VFG ACFP +RPYN K + S EC+F+G +HK
Sbjct: 594 TVSINFAVPYTQLFNQMLDYSFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHKN 415
Query: 941 YKCLDQSGRIYISKDVLFHEHRFPYPILFPTDHSS 975
YKCL +G++ +SKDV+F+E FPY LF D S+
Sbjct: 414 YKCLAPAGKL-VSKDVIFNEI*FPYKELFLPDSST 313
Score = 92.4 bits (228), Expect(2) = 3e-40
Identities = 45/73 (61%), Positives = 54/73 (73%)
Frame = -3
Query: 807 DGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWD 866
D GGEF PLT GIIH+L PHT +QN VERK RHIV+ GL+LLSHAS+PL+FW
Sbjct: 814 DWGGEF*PLTEFLND*GIIHKLIFPHTQYQN-VVERKQRHIVKFGLSLLSHASLPLKFWG 638
Query: 867 HAFLAATYLINRM 879
HAF+ +LINR+
Sbjct: 637 HAFITPVFLINRL 599
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 112 bits (281), Expect(2) = 4e-39
Identities = 52/98 (53%), Positives = 71/98 (72%)
Frame = +1
Query: 1083 LQPTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYR 1142
L PTLL T EP++VKQA+ W +AMQ ++ ALM N T TL LP+ + + CKW++R
Sbjct: 1 LHPTLLFTTAEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFR 180
Query: 1143 IKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVK 1180
IKEN G++N+Y++RLVAKG+ G DYSETFSPV++
Sbjct: 181 IKENLYGTLNRYRSRLVAKGFHLKFGCDYSETFSPVIE 294
Score = 69.3 bits (168), Expect(2) = 4e-39
Identities = 30/44 (68%), Positives = 39/44 (88%)
Frame = +3
Query: 1182 ITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFE 1225
+T+RLIL +A++ WPLQQ+D+NNAFL+G+L EEVYMVQ PGFE
Sbjct: 297 VTIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGFE 428
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 159 bits (402), Expect = 9e-39
Identities = 90/179 (50%), Positives = 117/179 (65%), Gaps = 2/179 (1%)
Frame = +1
Query: 1149 GSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFL 1208
G+I+++KARLVAK Y+QV G DY+ TFSPV K V L+ S+A+ WPL LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 1209 NGVLEEEVYMVQPPGF--EHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASK 1266
+G LEEEVYM QP GF + + N+VC+L ++ YGLKQ+PRAW I + + +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAI--WYDSHE 381
Query: 1267 CDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGV 1325
D S+F +S QGCIY++VYVDDI ITG+ I L L F K LG+L YFLG+
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 157 bits (396), Expect = 5e-38
Identities = 70/128 (54%), Positives = 95/128 (73%)
Frame = +3
Query: 1094 PTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINK 1153
P+++++A+ W +AM +E AL NNGTW LVPLP +T VGC+W+Y +K P+G +++
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 1154 YKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLE 1213
KARLVAKGY+QV G +Y +TFSPV TVRL L++A R WPL QLD+ NAFL+G LE
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 1214 EEVYMVQP 1221
E++YM QP
Sbjct: 381 EDIYMEQP 404
>AI855899 similar to GP|2244960|emb| retrotransposon like protein {Arabidopsis
thaliana}, partial (18%)
Length = 418
Score = 155 bits (393), Expect = 1e-37
Identities = 77/136 (56%), Positives = 95/136 (69%)
Frame = +1
Query: 1351 NMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFM 1410
NMLD ISTPM KLSK L + +YR +VGALQY T+TRP I++ VNKV +FM
Sbjct: 10 NMLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFM 189
Query: 1411 AQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGS 1470
+ P + + VKRILRYL GT+T G+LLQP M + L AY D DWGSDP + RSTSGS
Sbjct: 190 SSPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGS 369
Query: 1471 CVFLGYNLISWTAKKQ 1486
C+F G NLI+W++KKQ
Sbjct: 370 CIFSGSNLIAWSSKKQ 417
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 154 bits (390), Expect = 2e-37
Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Frame = +2
Query: 1449 LIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAEL 1508
L YCDADW P DRRSTSG CVF+G NL+SW +KKQ++VARSS EAEYRS+A T EL
Sbjct: 17 LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196
Query: 1509 LWVQSLLTELKIPFTIP-TVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLL 1567
+W++ L EL+ + +YCDN + + + NP+ H RTKH+E+D F+REK+ K ++
Sbjct: 197 MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376
Query: 1568 VQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVD 1601
+ + S Q DI TK+L + ++ KL D
Sbjct: 377 TEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYD 478
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 154 bits (389), Expect = 3e-37
Identities = 77/151 (50%), Positives = 101/151 (65%), Gaps = 1/151 (0%)
Frame = -3
Query: 1109 AMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQG 1168
AMQEE N W LV P N +G KW++R K + G I + KARLVAKGY+Q +G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 1169 FDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKD 1228
DY ET++PV + +R++L+ + L Q+DV +AFLNG+++EEVY+ QPPGFE D
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 1229 K-NLVCKLQKALYGLKQAPRAWFHRLKEVLI 1258
K V KLQKALYGLKQAPRAW+ R+ L+
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLL 6
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 148 bits (374), Expect = 2e-35
Identities = 75/214 (35%), Positives = 128/214 (59%), Gaps = 1/214 (0%)
Frame = +1
Query: 1378 DPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGIL 1437
D TE+R ++G+L+Y +RP I FAV+ + +FM +P H +A KR+LR +KGT+ G+L
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 1438 LQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAE 1497
+ + L+ Y D+DW DP+ +ST G ++ ++KKQ ++A S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 1498 YRSLANTTAELLWVQSLLTELKIPFTIP-TVYCDNMSTVLLTHNPILHTRTKHMEMDIFF 1556
Y + + + +W+ +LL ELK+ P + DN S + L +P LH R+KH+E+ +
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 1557 VREKVQDKSLLVQHVPSEHQKADIFTKALSPTRF 1590
+R++V ++ V++ +E Q AD+ TK + +RF
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRF 651
>BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (japonica
cultivar-group)}, partial (3%)
Length = 413
Score = 87.8 bits (216), Expect(2) = 2e-35
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = +1
Query: 1345 DLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVN 1404
DLL K M +A IS+PM KLSK+ +DPT Y SVVGALQYAT+TRPE S++VN
Sbjct: 202 DLLPKTKMAEAQPISSPMVSSCKLSKSGSDLFQDPTLYGSVVGALQYATLTRPEFSYSVN 381
Query: 1405 KVCQFMAQP 1413
KVCQFM+QP
Sbjct: 382 KVCQFMSQP 408
Score = 81.6 bits (200), Expect(2) = 2e-35
Identities = 41/75 (54%), Positives = 54/75 (71%)
Frame = +2
Query: 1268 DPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQV 1327
DPSLF Y Q +++LVYVDDI ITG + LIQQL +QL+S FALKQLG LDYFLG++V
Sbjct: 2 DPSLFVYKQQQYTVFLLVYVDDITITGNCVLLIQQLISQLNSQFALKQLGLLDYFLGIEV 181
Query: 1328 THLSNGNLLLNQTKY 1342
+L + + + K+
Sbjct: 182 KYLPDKGISCPRLKW 226
>BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delalandii},
partial (5%)
Length = 667
Score = 145 bits (366), Expect = 1e-34
Identities = 93/217 (42%), Positives = 117/217 (53%)
Frame = -3
Query: 483 TWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLI 542
+W PDSGA+HHVTN P Q+++GNGQGL I S G + S NP SL+
Sbjct: 620 SWYPDSGASHHVTNMSQNIQQVAPFEEPIQIIIGNGQGLNINSSGLSTFSSPINPQFSLV 441
Query: 543 LKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFD 602
L LL VP+ITKNL+ VS+F +DNNV+F FH+ C DT +LL G VG DGLY
Sbjct: 440 LSNLLFVPTITKNLIRVSQFCKDNNVYFEFHSYVCLFKS*DTKLVLLEGFVGSDGLY--Q 267
Query: 603 GPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNADSVNVSST 662
P A S PQS S L S ++ L S + K S +T V NN V++
Sbjct: 266 SPQLFA-SMPQSKSYLKSFRSSL-SNNIVVKTSIVKTTNCSTKFLFVSANNTVVVDL--- 102
Query: 663 VSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSL 699
V + SCNS S + +WHSRLGH D +K L
Sbjct: 101 VVNTTSCNSVS----FPIWHSRLGHHSVDAMKTVFRL 3
>BQ273297
Length = 420
Score = 91.7 bits (226), Expect(2) = 1e-32
Identities = 44/78 (56%), Positives = 58/78 (73%)
Frame = +2
Query: 1495 EAEYRSLANTTAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDI 1554
E E+RS+ A++ +QSLL+EL++ + P + CDN STV L HN ILH+RTKHME+D+
Sbjct: 185 ETEHRSMTLIVAKVT*IQSLLSELQVAHSTPLILCDNTSTVSLAHNLILHSRTKHMELDL 364
Query: 1555 FFVREKVQDKSLLVQHVP 1572
FFVREKV +K L V HVP
Sbjct: 365 FFVREKVLNKKLDVVHVP 418
Score = 68.9 bits (167), Expect(2) = 1e-32
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = +1
Query: 1428 LKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQS 1487
LKGT++ G+ Q S+ P+PL AYC +DW SDPD RRS FLG NLI +KKQS
Sbjct: 1 LKGTISWGLHFQATSLQHPIPLHAYCGSDWASDPDYRRS------FLGPNLIC*WSKKQS 162
Query: 1488 LVARSS 1493
+VARSS
Sbjct: 163 VVARSS 180
>TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON like protein,
partial (5%)
Length = 799
Score = 79.3 bits (194), Expect(3) = 7e-32
Identities = 41/100 (41%), Positives = 59/100 (59%)
Frame = +1
Query: 1408 QFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRST 1467
QFM P + +A KR+LRYLKGT+ G+ L+ L A+ DA+W + D RST
Sbjct: 136 QFMKDPTKIRMQATKRVLRYLKGTIDFGLQLRSSPDQH---LRAFYDANWVDNTSDIRST 306
Query: 1468 SGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAE 1507
V+ G ++ISW+ KKQS++ +SST+ EY + T E
Sbjct: 307 GAYVVYFGLSVISWSCKKQSIIDKSSTKVEYHKITTTIIE 426
Score = 69.3 bits (168), Expect(3) = 7e-32
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +2
Query: 1521 PFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADI 1580
P PT+Y N+ + L NP+ H KH+ +D FV++ V +K L V HVPS H D+
Sbjct: 437 PDPSPTMYSYNIGAMYLCANPVFHLCMKHLTIDHLFVQDLVANKQLRVSHVPSCH*HVDL 616
Query: 1581 FTKALSPTRFLLLKDKLNVVDKQVLL 1606
FTKAL +R + DK+ VV +L
Sbjct: 617 FTKALVSSRHKFMMDKIGVVSTTTIL 694
Score = 29.3 bits (64), Expect(3) = 7e-32
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 1378 DPTEYRSVVGALQYATITRPEISFAVNKV 1406
D Y +V +LQY ++T P+I+F +NK+
Sbjct: 48 DGIVYCQLVDSLQYLSLTCPDIAFPINKL 134
>CO984748
Length = 810
Score = 132 bits (331), Expect = 2e-30
Identities = 94/231 (40%), Positives = 114/231 (48%), Gaps = 1/231 (0%)
Frame = -2
Query: 459 QQVSTGMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNG 518
Q PQA LA S W + GATHHVT +P ++ VP+S EQ+ +GNG
Sbjct: 638 QSQQNAQAPQAYLANANPTQQSQ-NWYINYGATHHVTASPQNLMNEVPTSGNEQVFLGNG 462
Query: 519 QGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCS 578
QGLPI GS + S F L L LL VP ITKNLVSVS FA+D NVFF FH++HC
Sbjct: 461 QGLPI--TGSTVFNSPFASNVKLTLNNLLHVPHITKNLVSVS*FAKD-NVFFEFHSSHCV 291
Query: 579 VHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAAN-KASPA 637
V Q +LL G + DGLY F S+ L+S K+AAN S
Sbjct: 290 VKSQVDGSILLRGALSQDGLYVF-------------SNLLNSSFKFTVGKAAANVHMSSL 150
Query: 638 IDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHP 688
DL S CNN + S + S S+ LWH+RLGHP
Sbjct: 149 SDLSS-------HCNNVST-----------SALNTSNYSLVSLWHNRLGHP 51
>BF595216
Length = 421
Score = 79.7 bits (195), Expect(2) = 3e-30
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = +3
Query: 1196 WPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDKNLVCKLQKALY 1240
WP+QQLDVNNAFLNG+L+EEVYM QPPGF+ K+LVCKL KA+Y
Sbjct: 285 WPIQQLDVNNAFLNGILQEEVYMQQPPGFDSTTKSLVCKLHKAIY 419
Score = 72.4 bits (176), Expect(2) = 3e-30
Identities = 33/50 (66%), Positives = 43/50 (86%)
Frame = +1
Query: 1144 KENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAIS 1193
KEN DG++NKYKA+LVAKG+ Q G DY ETFS V+KPIT+RL+L+LA++
Sbjct: 124 KENSDGTVNKYKAKLVAKGFHQQYGTDYIETFSLVIKPITMRLLLTLAVT 273
Score = 48.9 bits (115), Expect = 2e-05
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2
Query: 742 FADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSD 781
F+DL PA SS G+ Y++T VDA T+YTW+F L+ KS+
Sbjct: 5 FSDLCSPAPFVSSTGYSYYVTFVDAFTRYTWIFLLRHKSE 124
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,711,825
Number of Sequences: 63676
Number of extensions: 1521575
Number of successful extensions: 26180
Number of sequences better than 10.0: 978
Number of HSP's better than 10.0 without gapping: 14034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22315
length of query: 1611
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1501
effective length of database: 5,635,272
effective search space: 8458543272
effective search space used: 8458543272
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0320a.8