BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0318.14
(58 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228723 weakly similar to UP|Q8S2W4 (Q8S2W4) Arabinogalactan-pe... 97 2e-21
TC214826 homologue to UP|RS8_ORYSA (P49199) 40S ribosomal protei... 96 4e-21
BI968291 weakly similar to GP|15289862|dbj| P0010B10.2 {Oryza sa... 46 4e-06
TC207174 UP|Q61402 (Q61402) Gcap1 protein (Fragment), partial (13%) 45 8e-06
TC207175 UP|Q61402 (Q61402) Gcap1 protein (Fragment), partial (18%) 45 8e-06
TC227807 homologue to UP|Q93YA9 (Q93YA9) Lipoxygenase, partial (... 39 4e-04
TC234297 similar to UP|SER2_GALME (O96615) Sericin-2 (Silk gum p... 38 0.001
TC205103 similar to UP|Q80WI9 (Q80WI9) Gametogenetin protein 3, ... 36 0.004
TC228100 similar to UP|Q9VYL9 (Q9VYL9) CG15729-PA, partial (7%) 36 0.005
TC214923 similar to UP|RL9_ARATH (P49209) 60S ribosomal protein ... 33 0.039
TC204735 similar to UP|Q9XWP3 (Q9XWP3) C. elegans NLP-25 protein... 32 0.087
TC204736 similar to UP|Q8L5F8 (Q8L5F8) Arabinogalactan protein (... 31 0.11
TC225829 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like ara... 30 0.19
TC215513 weakly similar to UP|Q7NRG7 (Q7NRG7) Probable type II s... 30 0.33
TC231747 29 0.57
TC223869 28 0.74
TC229364 similar to UP|AX28_SOYBN (P13089) Auxin-induced protein... 28 0.74
AW704803 weakly similar to GP|19880576|gb| CcmF {Legionella pneu... 28 0.74
TC227464 similar to UP|Q8VYI9 (Q8VYI9) AT5g64080/MHJ24_6, partia... 28 1.3
TC227052 weakly similar to GB|AAM19768.1|20453045|AY094388 AT3g5... 28 1.3
>TC228723 weakly similar to UP|Q8S2W4 (Q8S2W4) Arabinogalactan-peptide AGP23,
partial (74%)
Length = 473
Score = 96.7 bits (239), Expect = 2e-21
Identities = 49/58 (84%), Positives = 52/58 (89%)
Frame = +3
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALFH 58
MD++KVTC VLI AASMSAALAT EV APAPGP+SGASA VGSLVGASVLSFFALFH
Sbjct: 99 MDIRKVTCAVLIAAASMSAALATTEVSAPAPGPSSGASAATVGSLVGASVLSFFALFH 272
>TC214826 homologue to UP|RS8_ORYSA (P49199) 40S ribosomal protein S8,
partial (27%)
Length = 960
Score = 95.9 bits (237), Expect = 4e-21
Identities = 51/59 (86%), Positives = 52/59 (87%), Gaps = 1/59 (1%)
Frame = +3
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGAS-ATVVGSLVGASVLSFFALFH 58
MDMKKVTC VLI AASMSAALA EVPAPAPGP+SGAS A VGSLVGASVLSFFALFH
Sbjct: 111 MDMKKVTCAVLIAAASMSAALAATEVPAPAPGPSSGASAAAAVGSLVGASVLSFFALFH 287
>BI968291 weakly similar to GP|15289862|dbj| P0010B10.2 {Oryza sativa
(japonica cultivar-group)}, partial (35%)
Length = 215
Score = 45.8 bits (107), Expect = 4e-06
Identities = 25/36 (69%), Positives = 27/36 (74%), Gaps = 1/36 (2%)
Frame = -3
Query: 19 AALATNEVPAPAPGPASGAS-ATVVGSLVGASVLSF 53
AALA EVPAPAPGP+SGAS A VGSLV +L F
Sbjct: 213 AALAATEVPAPAPGPSSGASAAAAVGSLVXXPLLFF 106
>TC207174 UP|Q61402 (Q61402) Gcap1 protein (Fragment), partial (13%)
Length = 556
Score = 45.1 bits (105), Expect = 8e-06
Identities = 28/66 (42%), Positives = 37/66 (55%), Gaps = 9/66 (13%)
Frame = -3
Query: 1 MDMKKVTCVVLIVAASMSAAL---------ATNEVPAPAPGPASGASATVVGSLVGASVL 51
M+ KKV CVVL+V S+S A+ A VPAPA P G +A +G +GAS+L
Sbjct: 500 MEKKKVACVVLLVVTSISTAMAHAGHDKAEAPAIVPAPALAPKGGVAA--LGPFLGASLL 327
Query: 52 SFFALF 57
SF +
Sbjct: 326 SFLGYY 309
>TC207175 UP|Q61402 (Q61402) Gcap1 protein (Fragment), partial (18%)
Length = 564
Score = 45.1 bits (105), Expect = 8e-06
Identities = 28/66 (42%), Positives = 37/66 (55%), Gaps = 9/66 (13%)
Frame = +3
Query: 1 MDMKKVTCVVLIVAASMSAAL---------ATNEVPAPAPGPASGASATVVGSLVGASVL 51
M+ KKV CVVL+V S+S A+ A VPAPA P G +A +G +GAS+L
Sbjct: 87 MEKKKVACVVLLVVTSISTAMAHAGHDKAEAPAIVPAPALAPKGGVAA--LGPFLGASLL 260
Query: 52 SFFALF 57
SF +
Sbjct: 261 SFLGYY 278
>TC227807 homologue to UP|Q93YA9 (Q93YA9) Lipoxygenase, partial (10%)
Length = 1057
Score = 39.3 bits (90), Expect = 4e-04
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Frame = +2
Query: 5 KVTCVVLIVAASMSAALATNE--VPAPAPGPASGASATVVGS--LVGAS-VLSFFALF 57
K V+IVA +AA A+ + PAPAPGP +GA+ +V S ++GAS VLS A+F
Sbjct: 539 KSFATVIIVALFFAAAAASAQDLSPAPAPGPDAGAAGSVSSSVAVIGASVVLSMLAIF 712
>TC234297 similar to UP|SER2_GALME (O96615) Sericin-2 (Silk gum protein 2)
(Fragment), partial (6%)
Length = 525
Score = 37.7 bits (86), Expect = 0.001
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +2
Query: 9 VVLIVAASMSAALATNEVPAPAPGPASGASATVVGS--LVGAS-VLSFFALF 57
+ LIVA +AA A + PAP GP +GA+ +V S ++GAS VLS A+F
Sbjct: 119 IALIVALFFAAATAQDLSPAPVQGPDAGAARSVSSSVAVIGASVVLSMLAIF 274
>TC205103 similar to UP|Q80WI9 (Q80WI9) Gametogenetin protein 3, partial (9%)
Length = 702
Score = 36.2 bits (82), Expect = 0.004
Identities = 26/61 (42%), Positives = 35/61 (56%), Gaps = 8/61 (13%)
Frame = +2
Query: 5 KVTCVVLIVAASMSAAL-----ATNEVPAPAPGPASGASATVVGS--LVGAS-VLSFFAL 56
K V LIVA SA+ + VPAPAP P +GA+ +V S ++GAS V+S A+
Sbjct: 131 KSFAVALIVALFFSASALDLVSGQSPVPAPAPAPDAGAAGSVSSSVAMIGASVVISLLAI 310
Query: 57 F 57
F
Sbjct: 311 F 313
>TC228100 similar to UP|Q9VYL9 (Q9VYL9) CG15729-PA, partial (7%)
Length = 608
Score = 35.8 bits (81), Expect = 0.005
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +2
Query: 5 KVTCVVLIVAASMSAALATNEVP-APAPGPASGASATVVGS--LVGASV-LSFFALF 57
K V L+VA +A+ + ++P A APGP +GA+ V S ++GASV LS A+F
Sbjct: 131 KSFAVALLVALFFAASASAQDLPPAAAPGPDAGAAGAVSSSVAMIGASVLLSMLAIF 301
>TC214923 similar to UP|RL9_ARATH (P49209) 60S ribosomal protein L9, partial
(32%)
Length = 952
Score = 32.7 bits (73), Expect = 0.039
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Frame = +1
Query: 10 VLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS-VLSFFALF 57
+L++ A SA ++ P PAP + S + S++GA+ VLS A+F
Sbjct: 487 ILLLLALFSATVSAQGSPTPAPDAGAAGSVSSSASVIGAAVVLSMLAIF 633
>TC204735 similar to UP|Q9XWP3 (Q9XWP3) C. elegans NLP-25 protein
(Corresponding sequence Y43F8C.1), partial (18%)
Length = 644
Score = 31.6 bits (70), Expect = 0.087
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 9 VVLIVAASMSAALATNEVPAPAPGPASGASATVV-GSLVGASVLSFFALF 57
+VL++A A + APAPGP+S A+ V +L VL+F LF
Sbjct: 129 LVLVIAMLAMVATGVSAAEAPAPGPSSDATTFFVPTALASLFVLAFGLLF 278
>TC204736 similar to UP|Q8L5F8 (Q8L5F8) Arabinogalactan protein (Fragment),
complete
Length = 637
Score = 31.2 bits (69), Expect = 0.11
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 9 VVLIVAASMSAALATNEVPAPAPGPASGASATVV-GSLVGASVLSFFALF 57
+VL+V+ AA + APAPGP+S A+ V + VL+F LF
Sbjct: 111 LVLVVSVLAMAATGVSAAEAPAPGPSSDATTLFVPTAFASLFVLAFGFLF 260
>TC225829 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (57%)
Length = 1652
Score = 30.4 bits (67), Expect = 0.19
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = -1
Query: 3 MKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASA 39
MK +TC L S SAA ++E + + GP++GASA
Sbjct: 1190 MKNLTCNPLTPLLSSSAAF*SSESASSSDGPSAGASA 1080
>TC215513 weakly similar to UP|Q7NRG7 (Q7NRG7) Probable type II secretion
system protein, partial (3%)
Length = 649
Score = 29.6 bits (65), Expect = 0.33
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Frame = +2
Query: 9 VVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS-VLSFFAL 56
++ +VA +AA A + PAP+P + S + +++GAS VLS A+
Sbjct: 131 ILAVVALFFAAANAQDLSPAPSPDAGAAGSVSSSVAMIGASVVLSLMAI 277
>TC231747
Length = 431
Score = 28.9 bits (63), Expect = 0.57
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 VTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS-VLSFFALF 57
++ V++ A SA ++ P PAP + + + S++GA+ V++ A+F
Sbjct: 54 MSLAVILFIALFSATVSAQGSPTPAPDGGAAGTVSSSASMIGAAVVITMLAIF 212
>TC223869
Length = 479
Score = 28.5 bits (62), Expect = 0.74
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -1
Query: 36 GASATVVGSLVGASVLSF 53
G+SA V+GS +GASVLSF
Sbjct: 149 GSSAAVLGSCLGASVLSF 96
>TC229364 similar to UP|AX28_SOYBN (P13089) Auxin-induced protein AUX28,
partial (86%)
Length = 1116
Score = 28.5 bits (62), Expect = 0.74
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -1
Query: 14 AASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALFH 58
AAS+ A P+ +P +S +S T+ S + S+LSFF FH
Sbjct: 156 AASVVGAAPFPGSPSLSPSLSSVSSNTIFFSFLLVSLLSFFFFFH 22
>AW704803 weakly similar to GP|19880576|gb| CcmF {Legionella pneumophila},
partial (5%)
Length = 277
Score = 28.5 bits (62), Expect = 0.74
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 19 AALATNEVPAPAPGPASGASATVVGSLVGASVL 51
AA A +P P+P P A AT G +G S +
Sbjct: 196 AAAAAPPLPGPSPAPPGAAGATAPGPRLGPSAV 98
>TC227464 similar to UP|Q8VYI9 (Q8VYI9) AT5g64080/MHJ24_6, partial (53%)
Length = 829
Score = 27.7 bits (60), Expect = 1.3
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 14 AASMSAALATNEV-PAPAPGPASGASATVVGSLVGASVLSFF 54
AA S NEV PAPAP PA G +A+ +L S +S F
Sbjct: 437 AADASTNGPVNEVSPAPAPAPAQGNTAS---ALFPISAISLF 553
>TC227052 weakly similar to GB|AAM19768.1|20453045|AY094388
AT3g56200/F18O21_160 {Arabidopsis thaliana;} , partial
(68%)
Length = 1627
Score = 27.7 bits (60), Expect = 1.3
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +3
Query: 14 AASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
AA +S L + P P GA V S+VGA ++S A+
Sbjct: 87 AAGVSVPLLGDSKGTPPPASVPGAVFNVATSIVGAGIMSIPAI 215
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,089,292
Number of Sequences: 63676
Number of extensions: 19468
Number of successful extensions: 378
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of query: 58
length of database: 12,639,632
effective HSP length: 34
effective length of query: 24
effective length of database: 10,474,648
effective search space: 251391552
effective search space used: 251391552
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0318.14