BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0316.6
(1449 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO982349 90 6e-18
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 90 8e-18
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 89 2e-17
TC231922 82 2e-15
CA851030 76 1e-13
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 55 1e-13
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 75 3e-13
BI471325 53 6e-13
BI972659 73 1e-12
CA851073 71 3e-12
TC221865 70 5e-12
BM891241 56 2e-11
CO984521 69 2e-11
TC233392 68 3e-11
CF922212 67 4e-11
TC231841 67 4e-11
CO986021 67 7e-11
TC233956 66 1e-10
BG404993 66 1e-10
CO979823 65 3e-10
>CO982349
Length = 795
Score = 90.1 bits (222), Expect = 6e-18
Identities = 56/177 (31%), Positives = 81/177 (45%)
Frame = +3
Query: 883 VAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSRNVL 942
V + +S L +ADD I F AT+ I IL +E ASG IN +S
Sbjct: 261 VGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGAIWKP- 437
Query: 943 DTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAG 1002
D E + L + YLG+P +I + + + KL WK++ +S G
Sbjct: 438 DHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHISLGG 617
Query: 1003 REVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLC 1059
R LI ++ A+P Y S F P + +L + KF W G + +R I WVKW T+C
Sbjct: 618 RVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETVC 788
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase (Fragment)
, partial (59%)
Length = 1077
Score = 89.7 bits (221), Expect = 8e-18
Identities = 58/178 (32%), Positives = 82/178 (45%)
Frame = +1
Query: 890 ISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSRNVLDTSFNEL 949
IS L +ADD I F A I IL ++E S IN KS V V D E
Sbjct: 379 ISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVF-GVTDQWKQEA 555
Query: 950 KQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKS 1009
L + YLG+P + +++ + + +KL WK + +S GR LIKS
Sbjct: 556 ANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGGRVTLIKS 735
Query: 1010 VAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLCRHKHDGGL 1067
V +IP Y S F +P S+ +L + F W G ++ I W++W LC K GG+
Sbjct: 736 VLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPKERGGI 909
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase homolog
T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 88.6 bits (218), Expect = 2e-17
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Frame = +2
Query: 1020 SCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSL 1079
S F LP + A+L+ + +F W G+A R I WV W T+C K GGLG +D + FN +L
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTL 184
Query: 1080 VGKNWWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKGYRPSYAWASILRSKLI-----FDK 1134
+GK W ++ A++ ++ Y L + G + S W +++++ + +
Sbjct: 185 LGKWRWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKR 364
Query: 1135 GARWRIGDGKKVQVWRDNW 1153
W++G G +++ W D W
Sbjct: 365 ETIWKVGGGDRIKFWEDLW 421
>TC231922
Length = 803
Score = 82.0 bits (201), Expect = 2e-15
Identities = 58/209 (27%), Positives = 92/209 (43%), Gaps = 14/209 (6%)
Frame = -3
Query: 1138 WRIGDGKKVQVWRDNWLPGGAPLLFREDLVAEWGIHLVSDLIVQPHGG-----------W 1186
WR+G G K++ W+D+WL G L + + + + I +L + G W
Sbjct: 705 WRVGCGDKIKFWQDSWLSEGCNLQQKYNQL--YTISRQ*NLTISKMGKFSQNARSWEFKW 532
Query: 1187 NVPLLEMVFAPAT--VQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLLQSLTQEGV 1244
L + +A A + I + + + D +FW +G+YS+KS Y+LL
Sbjct: 531 RRRLFDYEYAMAVDFMNEISGISIQN-QAHDSMFWKADSSGVYSTKSAYRLLMPSISPAP 355
Query: 1245 SSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDD-RCPLCG 1303
S +++ W + PR +WR LP R +L R + + D CPLCG
Sbjct: 354 SRR---------IFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCG 202
Query: 1304 CEEETNDHVFVCCPAVQPLWFASPLAIRV 1332
C+ E H+F C + LW+ S IRV
Sbjct: 201 CQHEEAGHLFFHCKMTKGLWWESMRWIRV 115
>CA851030
Length = 358
Score = 75.9 bits (185), Expect = 1e-13
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = +1
Query: 701 WQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRSRANWLRFGDKNTNFFHQKATQRRKRN 760
++ ++ QV+ TK E +LD+LL Q+E +W QRSRA W + DKNT FFH+K QR+ N
Sbjct: 97 FRAKNRQVIASTKVVEESLDSLLKQEEEYWQQRSRAIWFKERDKNTEFFHRKTLQRKASN 276
Query: 761 MIEKIRDDGG 770
I KI+DD G
Sbjct: 277 SITKIQDDEG 306
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like protein
{Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 55.5 bits (132), Expect(2) = 1e-13
Identities = 30/84 (35%), Positives = 45/84 (52%)
Frame = -2
Query: 936 SVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKE 995
S S+NV ++ LG+++ + KYLG+P S F+F+ D+V K+ WK
Sbjct: 327 SFSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKS 148
Query: 996 KFLSRAGREVLIKSVAQAIPSYVM 1019
LS GR L K V A+PS++M
Sbjct: 147 NLLSMVGRLTLTK*VV*ALPSHIM 76
Score = 40.4 bits (93), Expect(2) = 1e-13
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = -3
Query: 842 LDGFPALFYQRHWDIIGDDVAHFCLQ----VLNGTASPGSLHGIKVAQKAPVISHLLFAD 897
LD F R D I + CL+ ++N + I+V + +ISHL F D
Sbjct: 623 LDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKKL*RSIQVNRGGLLISHLAFVD 444
Query: 898 DNILFARATINEAACISDILSTYEKASGQVINLDKS 933
D ILF A +++ I+ L + +SG +N+DK+
Sbjct: 443 DLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKT 336
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 74.7 bits (182), Expect = 3e-13
Identities = 37/97 (38%), Positives = 53/97 (54%)
Frame = +2
Query: 1002 GREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLCRH 1061
GR LIKSV A+P +S F +P + +L + +F W G I WVKW+ +C
Sbjct: 8 GRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICNP 187
Query: 1062 KHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQI 1098
K DGGLG +D FN +L G+ W + S + L A++
Sbjct: 188 KIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>BI471325
Length = 421
Score = 53.1 bits (126), Expect(2) = 6e-13
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +2
Query: 878 LHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSV 937
+H +KV + ++SHLL D LF R EA + +IL+T+E +SG V+NL KS +
Sbjct: 8 IHRVKVHRGITILSHLLSVDFYFLFCRTIDKEADVLKNILTTFEASSGLVVNLRKSEICF 187
Query: 938 SRN 940
SRN
Sbjct: 188 SRN 196
Score = 40.4 bits (93), Expect(2) = 6e-13
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Frame = +1
Query: 962 DKYLGLPTIIGKSKSQIFNFVKD---RVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYV 1018
D+YL +P++I K IFN+++D R++ L +E F + + ++IK VAQ+I +Y
Sbjct: 238 DEYLDMPSMIRTKKKAIFNYLRDEFGRIYSTLV-QQESFKGQREKCLIIKYVAQSITTYC 414
Query: 1019 MS 1020
MS
Sbjct: 415 MS 420
>BI972659
Length = 453
Score = 72.8 bits (177), Expect = 1e-12
Identities = 42/141 (29%), Positives = 68/141 (47%)
Frame = +1
Query: 913 ISDILSTYEKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTIIG 972
+ +L +E SG IN KS + ++ QLL + ++ YLG+P +
Sbjct: 34 LKSMLRGFEMVSGLRINYAKSQFGIV-GFQPNWAHDAAQLLNCRQLDIPFHYLGMPIAVK 210
Query: 973 KSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAEL 1032
S ++ + ++ KL W +K+LS GR LIKSV A+P Y++S F +P + +L
Sbjct: 211 ASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKIPQRIVDKL 390
Query: 1033 DGMIAKFFWAGDASRRGIHWV 1053
+ F W G+ I WV
Sbjct: 391 VSLQRTFMWGGNQHHNRISWV 453
>CA851073
Length = 633
Score = 71.2 bits (173), Expect = 3e-12
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Frame = +1
Query: 1215 DCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELA 1274
D + W G+YS+KS Y++L + + VS ++ ++K W+ + PR +
Sbjct: 28 DTMVWKADPCGVYSTKSAYRILMTCNRH-VSEAN--------IFKTIWKLKIPPRAAVFS 180
Query: 1275 WRAIKGILPVRVSLRIRGMDV-DDRCPLCGCEEETNDHVFVCCPAVQPLWFAS------- 1326
WR IK LP R +L R + + ++ CPLCG E+E DH+F C + LW+ S
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWESMRWNQIV 360
Query: 1327 -PLAIRVASFSSLHELAVAFLSTAEEDFIPVFQAWL---YTLWEARNALIF 1373
PL++ AS H + A + W+ ++W+ RN LIF
Sbjct: 361 GPLSVSPAS----HFVQFCDGFGAGRNHTRWCGWWIALTSSIWKHRNLLIF 501
>TC221865
Length = 1045
Score = 70.5 bits (171), Expect = 5e-12
Identities = 64/269 (23%), Positives = 115/269 (41%), Gaps = 21/269 (7%)
Frame = -3
Query: 1138 WRIGDGKKVQVWRDNWLPGGAPLLFR-----------EDLVAEWGIHLVSDLIVQPHGGW 1186
W++G G K + W D + G L+ + + L+ + G H ++ + W
Sbjct: 929 WKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSH--TETTWEWKFQW 756
Query: 1187 NVPLL--EMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLLQSLTQEGV 1244
PL E+ ++ I P+ DC W NG YS++S Y L+Q
Sbjct: 755 RRPLFDNEVDTTIGFLEDISRFPIHRHL-TDCWVWKSEPNGHYSTRSAYHLMQH------ 597
Query: 1245 SSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDR-CPLCG 1303
++ N P+ +++ W+ + + A R +K LP + +LR R + ++ C C
Sbjct: 596 --EAAKANTDPA-FEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQVQLNGTLCLFCR 426
Query: 1304 CEEETNDHVFVCCPAVQPLWFASPLAIRVASFSSL----HELAVAFLSTAEEDFIPVFQA 1359
EE H+F C QP+W+ S I + S H L +F + +
Sbjct: 425 NYEEEASHLFFSCTKTQPVWWESLSWINTSGAFSANPRHHFLQHSFGLLGLKQYNR*KCW 246
Query: 1360 WL---YTLWEARNALIFNNKPVSMESLLQ 1385
W+ +T+W+ RN IF+N+P + +++
Sbjct: 245 WVALTFTIWQHRNRTIFSNEPFNGSKMME 159
>BM891241
Length = 407
Score = 56.2 bits (134), Expect(2) = 2e-11
Identities = 25/61 (40%), Positives = 34/61 (54%)
Frame = -2
Query: 1043 GDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAA 1102
GD + I WVKW +C K GGLG +D FN++L+GK W + S L A+I +
Sbjct: 403 GDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINSK 224
Query: 1103 Y 1103
Y
Sbjct: 223 Y 221
Score = 32.3 bits (72), Expect(2) = 2e-11
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -3
Query: 1112 AKKGYRPSYAWASILR-----SKLIFDKGARWRIGDGKKVQVWRDNWL 1154
+K GY SY W + + IF + W++G G K+ W D WL
Sbjct: 189 SKGGY--SYWWRDLRKFYHQSDHSIFHQYMSWKVGCGDKINFWTDKWL 52
>CO984521
Length = 716
Score = 68.6 bits (166), Expect = 2e-11
Identities = 48/178 (26%), Positives = 80/178 (43%), Gaps = 12/178 (6%)
Frame = -2
Query: 1219 WPWTV--NGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWR 1276
W W +G YS+KS Y+ L +T G +K+ W+ + AWR
Sbjct: 640 WKWAAEPSGCYSTKSAYKALHHVTV---------GEEQDGKFKELWKLRVPLKVAIFAWR 488
Query: 1277 AIKGILPVRVSLRIRGMDVDDR-CPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVAS- 1334
I+ LP + +LR + +++ + CPLC EET H+F C V PLW+ S + +
Sbjct: 487 LIQDKLPTKANLRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWWESQSWVNMMGV 308
Query: 1335 --------FSSLHELAVAFLSTAEEDFIPVFQAWLYTLWEARNALIFNNKPVSMESLL 1384
FS + A + + + + A Y++W+ RN++IF+N L+
Sbjct: 307 FPYQPDQHFS--QHIFGASVGLQGKRWQWWWFALTYSIWKHRNSIIFSNANFDAHKLM 140
>TC233392
Length = 1145
Score = 68.2 bits (165), Expect = 3e-11
Identities = 47/179 (26%), Positives = 79/179 (43%), Gaps = 8/179 (4%)
Frame = -1
Query: 1215 DCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELA 1274
D W N +YS++S Y+LLQ + G + W+ + + A
Sbjct: 656 DTWVWKHEPNELYSTRSAYKLLQGHLE---------GEDQDGALQDLWKLKIPAKASIFA 504
Query: 1275 WRAIKGILPVRVSLRIRGMDVDDR-CPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVA 1333
WR I+ LP + +L R + ++D CP C EE H+F+ C ++PLW+ S +R
Sbjct: 503 WRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWVRSL 324
Query: 1334 SFSSL----HELAVAFLSTAEEDFIPVFQAWL---YTLWEARNALIFNNKPVSMESLLQ 1385
S + H L + + + W+ ++LW+ RN +IF N + LL+
Sbjct: 323 GVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQFNGIKLLE 147
>CF922212
Length = 445
Score = 67.4 bits (163), Expect = 4e-11
Identities = 38/137 (27%), Positives = 64/137 (45%), Gaps = 7/137 (5%)
Frame = -2
Query: 1024 LPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKN 1083
+P+ + +L + F W G ++ I WV W ++C K GLG RD + FN +L+GK
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 1084 WWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKGYRPSYAWASI------LRSKLIFDKGAR 1137
W ++ L A++ + Y +L + ++ S+ W I F+K +
Sbjct: 261 RWNLFHHQGELGARVLDSKYKRWRNLDEERRVKSESFWWQEISFITHSTEDGSWFEKRTK 82
Query: 1138 -WRIGDGKKVQVWRDNW 1153
R+G KV+ W D W
Sbjct: 81 TGRLGCRAKVRFWEDGW 31
>TC231841
Length = 791
Score = 67.4 bits (163), Expect = 4e-11
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Frame = +3
Query: 1219 WPWTVN--GMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWR 1276
W W + G Y++KS Y +L E G ++++ W+ + + AWR
Sbjct: 69 WVWKADPSGQYTAKSAYGVLWG---EMFEEQQDG------VFEELWKLKLPSKITIFAWR 221
Query: 1277 AIKGILPVRVSLRIRGMDVDD-RCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRV--- 1332
I+ LP R +LR + ++VDD RCP C EE+ H+F C + P+W+ S + +
Sbjct: 222 LIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGV 401
Query: 1333 -ASFSSLHELAVAFLSTAEEDFIPVFQAWL---YTLWEARNALIFNNKPVSMESLLQRLS 1388
+ H L + TA WL +T+W+ RN +IF+N + +L
Sbjct: 402 FPNHPRQHFLQHIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGTFNANKILDEAI 581
Query: 1389 TLL 1391
L+
Sbjct: 582 FLI 590
>CO986021
Length = 900
Score = 66.6 bits (161), Expect = 7e-11
Identities = 49/172 (28%), Positives = 78/172 (44%), Gaps = 9/172 (5%)
Frame = -1
Query: 1215 DCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELA 1274
D + W G+YS+KS Y+LL + G SS+ +K W+ + PR + +
Sbjct: 783 DSMLWKADPTGIYSTKSAYRLLLPNNRPGQHSSN---------FKILWKLKIPPRAELFS 631
Query: 1275 WRAIKGILPVRVSLRIRGMDVDD-RCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVA 1333
WR + L +R +L R + + D CPLCG +E H+F C LW+ S R
Sbjct: 630 WRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWWESMNWTRTL 451
Query: 1334 SFSSLHELAVAFLS-----TAEEDFIPVFQAWL---YTLWEARNALIFNNKP 1377
+ L + A F+ A+ + W+ T+W+ RN+L+F P
Sbjct: 450 G-AFLDDPAAHFIQFSDGFGAQRNHNRRCLWWIALTSTIWQHRNSLLFKGTP 298
>TC233956
Length = 757
Score = 65.9 bits (159), Expect = 1e-10
Identities = 50/186 (26%), Positives = 79/186 (41%), Gaps = 13/186 (6%)
Frame = +2
Query: 1219 WPWTVN--GMYSSKSGYQLLQS-LTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAW 1275
W W G+ S+KS YQ+++S L EG +KK W + P+ W
Sbjct: 65 WVWRAESTGIISTKSAYQVIKSELDDEGQHLG----------FKKLWEIKVPPKALSFVW 214
Query: 1276 RAIKGILPVRVSLRIRGMDV-DDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIR--- 1331
R + LP + +L R + V DD CP C + ET H+F C + PLW+ ++
Sbjct: 215 RLLWDRLPTKDNLIKRQIQVEDDLCPFCHSQSETASHLFFTCGKIMPLWWEFLSWVKEDK 394
Query: 1332 ------VASFSSLHELAVAFLSTAEEDFIPVFQAWLYTLWEARNALIFNNKPVSMESLLQ 1385
+ +F + A + +S + A ++W RN +IF N+ V + L
Sbjct: 395 VFHCRPMDNFLQHYSSAASKVSNTRRTMWWI--AVTNSIWRLRNDIIFQNQTVDITRLTD 568
Query: 1386 RLSTLL 1391
LL
Sbjct: 569 STLFLL 586
>BG404993
Length = 412
Score = 65.9 bits (159), Expect = 1e-10
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = -3
Query: 1219 WPWTVN--GMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWR 1276
W W + G YS+K+ Y+LLQ + G+ ++ + W+ + P+ WR
Sbjct: 326 WTWKADPSGNYSTKTAYELLQEAIR---------GDNEDGIFVQLWKLKIPPKAPVFTWR 174
Query: 1277 AIKGILPVRVSLRIRGMDVDDR-CPLCGCEEETNDHVFVCCPAVQPLWFAS 1326
I LP +V+LR R +++ D CPLC EE H+F C P W+ S
Sbjct: 173 LINDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWES 21
>CO979823
Length = 853
Score = 64.7 bits (156), Expect = 3e-10
Identities = 50/195 (25%), Positives = 78/195 (39%), Gaps = 17/195 (8%)
Frame = -2
Query: 1214 DDCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKEL 1273
+D W G YS+KSGY +L E + + + + W+ + +
Sbjct: 705 EDKWLWKPEPGGHYSTKSGYHVLWGELTEEIQDAD---------FAEIWKLKIPTKAAVF 553
Query: 1274 AWRAIKGILPVRVSLRIRGMDVDDR-CPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRV 1332
AWR ++ LP + +LR R + V D CPLC EE H+F C PLW+ S
Sbjct: 552 AWRLVRDRLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLWWES------ 391
Query: 1333 ASFSSLHELAVAFLSTAEEDFIPV------------FQAW----LYTLWEARNALIFNNK 1376
S L A T + F+ ++ W +T+W+ RN ++F N
Sbjct: 390 ---MSWVNLKTAMPQTPRQHFLQYGTDIADGLKSKRWKCWWIALTWTIWQHRNKVVFQNA 220
Query: 1377 PVSMESLLQRLSTLL 1391
+L+ LL
Sbjct: 219 TFHGNKVLEDALLLL 175
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.334 0.146 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,163,249
Number of Sequences: 63676
Number of extensions: 1271374
Number of successful extensions: 10177
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 9662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10045
length of query: 1449
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1340
effective length of database: 5,698,948
effective search space: 7636590320
effective search space used: 7636590320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0316.6