BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0314.20
(396 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, par... 120 8e-28
TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%) 83 2e-16
TC223618 80 2e-15
TC232958 75 5e-14
TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 67 1e-11
TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like pro... 67 1e-11
TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 66 2e-11
AW395660 64 2e-10
BI787361 63 2e-10
TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (... 62 6e-10
TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere au... 61 8e-10
BM121480 57 1e-08
BM143422 57 2e-08
TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g2... 54 1e-07
AI443156 48 7e-06
TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragm... 45 4e-05
TC234332 44 1e-04
BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa ... 43 3e-04
TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%) 42 5e-04
TC229223 similar to UP|Q9XI00 (Q9XI00) F8K7.20 protein (At1g2176... 39 0.004
>TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, partial (8%)
Length = 1061
Score = 120 bits (302), Expect = 8e-28
Identities = 111/376 (29%), Positives = 166/376 (43%), Gaps = 18/376 (4%)
Frame = +3
Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRLASL 70
LP E++ EIL R+PV SV+ + CK W+++I F H S SS+ L SL
Sbjct: 93 LPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFVLFHLNKSHSSLILRHRSHLYSL 272
Query: 71 GCYDRTPFSSVTSLTFQQLVSLAFYDDRKSLTSCYVQSLLENPLAPLETCRFNVQTKWVH 130
++P + L+ + CY S +
Sbjct: 273 DL--KSPEQNPVELSHPLM--------------CYSNS--------------------IK 344
Query: 131 ILGSCNGLLCLADRSCLFRLMNPFTRLASKRSPPLDVRSPPVDLDVRDDVITQYGFGYDQ 190
+LGS NGLLC+++ + L NPF R R P D P V YGFG+
Sbjct: 345 VLGSSNGLLCISNVADDIALWNPFLR--KHRILPADRFHRPQSSLFAARV---YGFGHHS 509
Query: 191 VNNKYKVL-ITY-------GFPRVTKLYTFGTKSWTTIQNFP----CDHQVPWRWWDKQG 238
+N YK+L ITY F +LYT + SW + + P C + G
Sbjct: 510 PSNDYKLLSITYFVDLQKRTFDSQVQLYTLKSDSWKNLPSMPYALCCARTM--------G 665
Query: 239 KFVSGSLNWWVP------ERNGIISFDLEKETYGEVLLPLHMGGDHPFNHVLEVLSNRLC 292
FVSGSL+W V E + I+SFDL +ET+ EV LP+ + GD F+ + +L LC
Sbjct: 666 VFVSGSLHWLVTRKLQPHEPDLIVSFDLTRETFHEVPLPVTVNGD--FDMQVALLGGCLC 839
Query: 293 LCYFNDIHCVVWLIKKYGNQQSWKKLMLIPHSKLNMAMPMPIHASCCLRPLCISENGIVF 352
+ VW+++ YG++ SW+KL + + + M M +RPL + + ++F
Sbjct: 840 VVEHRGTGFDVWVMRVYGSRNSWEKLFTLLENNDHHEM-MGSGKLKYVRPLALDGDRVLF 1016
Query: 353 MRTIDLQLVSYNTKNG 368
++L YN K G
Sbjct: 1017EHN-RIKLCWYNLKTG 1061
>TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%)
Length = 1185
Score = 83.2 bits (204), Expect = 2e-16
Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 27/334 (8%)
Frame = +3
Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRLASL 70
LP EL+ +L R+P ++ KCVCKSW LI+DP F ++Y ++S+ S L
Sbjct: 66 LPGELVSNVLSRLPSKVLLLCKCVCKSWFDLITDPHFVSNYY-VVYNSLQSQEEHLLVI- 239
Query: 71 GCYDRTPFSSVTSLTFQQLVSLAFYDDRKSLTSCYVQSLLENPLAPLETCRFNVQTK-WV 129
R PF S T+ ++S D +K +V S + NP P E +N K W
Sbjct: 240 ----RRPFFSGLK-TYISVLSWNTNDPKK-----HVSSDVLNP--PYE---YNSDHKYWT 374
Query: 130 HILGSCNGLLCLADRSCLFRLMNPFTRLASKRSPPLDVRSPPVDLDVRDDVITQYGFGYD 189
ILG CNG+ L + LMNP + K P SP D GFG+D
Sbjct: 375 EILGPCNGIYFLEGNPNV--LMNP-SLGEFKALPKSHFTSPHGTYTFTD----YAGFGFD 533
Query: 190 QVNNKYKVLI------------TYGFPRVTKLYTFGTKSWTTIQNFPCDHQVPWRWWDKQ 237
N YKV++ G+ +LY+ + SW + P +P W
Sbjct: 534 PKTNDYKVVVLKDLWLKETDEREIGY-WSAELYSLNSNSWRKLD--PSLLPLPIEIWGSS 704
Query: 238 GKF--VSGSLNWW--VPERNG----IISFDLEKETYGEVLLP-LHMGGDHPFNHVL--EV 286
F + +WW V E + +++FD+ KE++ ++ +P + D F ++ E
Sbjct: 705 RVFTYANNCCHWWGFVEESDATQDVVLAFDMVKESFRKIRVPKIRDSSDEKFGTLVPFEE 884
Query: 287 LSNRLCLCY---FNDIHCVVWLIKKYGNQQSWKK 317
++ L Y + VW++K Y ++ SW K
Sbjct: 885 SASIGFLVYPVRGTEKRFDVWVMKDYWDEGSWVK 986
>TC223618
Length = 444
Score = 79.7 bits (195), Expect = 2e-15
Identities = 53/150 (35%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Frame = +1
Query: 101 LTSCYVQSLLENPLAPLETCRFNVQTKWVH--ILGSCNGLLCLADRSCLFRLMNPFTRLA 158
L SC + SL N + + V+ K+ H I+GSCNGLLC A + L NP R++
Sbjct: 31 LKSCSLSSLFNNLSTVCDELNYPVKNKFRHDGIVGSCNGLLCFAIKGDCVLLWNPSIRVS 210
Query: 159 SKRSPPLDVRSPPVDLDVRDDVITQYGFGYDQVNNKYKVLITYGFPR------VTKLYTF 212
K SPP+ + R T +G GYD VN YKV+ + P K+Y+
Sbjct: 211 KK--------SPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVFCDPSEYFIECKVKVYSM 366
Query: 213 GTKSWTTIQNFPCDHQVPWRWWDKQGKFVS 242
T SW IQ+FP + GKFVS
Sbjct: 367 ATNSWRKIQDFPHGFSP----FQNSGKFVS 444
>TC232958
Length = 758
Score = 75.1 bits (183), Expect = 5e-14
Identities = 79/265 (29%), Positives = 124/265 (45%), Gaps = 15/265 (5%)
Frame = +1
Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRLASL 70
LP +LI EIL R+PV S++ FK VCKSW LISDP+FAK H+ A+L
Sbjct: 61 LPQDLITEILLRLPVKSLVRFKSVCKSWLFLISDPRFAKSHF------------DLFAAL 204
Query: 71 GCYDRTPFSSVTSLTFQQL-VSLAFYDDRKSLTSCYVQSLLENPLAPLETCRFNVQTKWV 129
DR F + ++ + + + + +DD S V ++ P AP F V
Sbjct: 205 A--DRILFIASSAPELRSIDFNASLHDD-----SASVAVTVDLP-APKPYFHF------V 342
Query: 130 HILGSCNGLLCLADRSCLFRL--MNPFTRLASKRSPPLDVRSPPVDLDVRDDVITQY--G 185
I+GSC G + L CL L NP T + + PL P+ + +D V G
Sbjct: 343 EIIGSCRGFILL---HCLSHLCVWNPTTGV--HKVVPLS----PIFFN-KDAVFFTLLCG 492
Query: 186 FGYDQVNNKYKVLITYGFPR----VTKLYTFGTKSWTTIQ--NFPCDHQVPWRWWDKQGK 239
FGYD + + V+ P+ ++++ +W I+ +FP H +++ G
Sbjct: 493 FGYDPSTDDFLVVHACYNPKHQANCAEIFSLRANAWKGIEGIHFPYTHFRYTNRYNQFGS 672
Query: 240 FVSGSLNWWV----PERNGIISFDL 260
F++G+++W N I++FDL
Sbjct: 673 FLNGAIHWLAFRINASINVIVAFDL 747
>TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 449
Score = 67.0 bits (162), Expect = 1e-11
Identities = 53/141 (37%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Frame = +1
Query: 2 RQPHSRLPWLPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTS 61
++ + L LP ELI EIL R+PV S++ FKCVCKS+ +LISDPQF HY + S
Sbjct: 82 KKQNQSLTTLPQELIREILLRLPVKSLLRFKCVCKSFLSLISDPQFVISHY----ALAAS 249
Query: 62 MTHQRLASLGCYDRTPFSSVTSLTFQQLVSLAFYDDRKSLTSCYVQSLLENPLAP-LETC 120
TH+ + L +D S T F K+ + V L P P L
Sbjct: 250 PTHRLI--LRSHDFYAQSIATESVF------------KTCSRDVVYFPLPLPSIPCLRLD 387
Query: 121 RFNVQTKWVHILGSCNGLLCL 141
F ++ K ILGSC GL+ L
Sbjct: 388 DFGIRPK---ILGSCRGLVLL 441
>TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like protein,
partial (5%)
Length = 1631
Score = 67.0 bits (162), Expect = 1e-11
Identities = 53/184 (28%), Positives = 83/184 (44%), Gaps = 19/184 (10%)
Frame = +3
Query: 185 GFGYDQVNNKYKVL-ITY-------GFPRVTKLYTFGTKSWTTIQNFP----CDHQVPWR 232
GFG+D YK++ I+Y F KLYT +W T+ + P C +
Sbjct: 135 GFGFDHKTRDYKLVRISYFVDLHDRSFDAQVKLYTLRANAWKTLPSLPYALCCARTM--- 305
Query: 233 WWDKQGKFVSGSLNWWVPER------NGIISFDLEKETYGEVLLPLHMGGDHPFNHVLEV 286
G FV SL+W V + + II+FDL + + E+ LP G D F L +
Sbjct: 306 -----GVFVGNSLHWVVTRKLEPDQPDLIIAFDLTHDIFRELPLPDTGGVDGGFEIDLAL 470
Query: 287 LSNRLCLCY-FNDIHCVVWLIKKYGNQQSWKKLMLIPHSKLNMAMPMPIHASCCLRPLCI 345
L LC+ F+ VW++++Y + SW K+ + S+ + + C+RPL
Sbjct: 471 LGGSLCMTVNFHKTRIDVWVMREYNRRDSWCKVFTLEESR-------EMRSLKCVRPLGY 629
Query: 346 SENG 349
S +G
Sbjct: 630 SSDG 641
>TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 696
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/97 (40%), Positives = 50/97 (51%)
Frame = +3
Query: 3 QPHSRLPWLPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSM 62
+ H+ LP ELI EIL R PV SV+ FKCVCKSW +LISDPQF T F S
Sbjct: 9 EKHTLSVTLPLELIREILLRSPVRSVLRFKCVCKSWLSLISDPQF------THFDLAASP 170
Query: 63 THQRLASLGCYDRTPFSSVTSLTFQQLVSLAFYDDRK 99
TH+ + YD + Q ++ Y ++K
Sbjct: 171THRLILISNYYDNFNYIESNYTCLQMIIRF*SYVNQK 281
>AW395660
Length = 381
Score = 63.5 bits (153), Expect = 2e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +3
Query: 8 LPWLPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAK 49
LP+LPDEL+ EIL R+PV S++ F+CVCKSW +LI DP F K
Sbjct: 255 LPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMK 380
>BI787361
Length = 423
Score = 63.2 bits (152), Expect = 2e-10
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Frame = +3
Query: 27 SVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRLASLGCYDRTPFSSVTSLTF 86
++M F+ V ++W +LI DP F K H S + TH L YDR V
Sbjct: 3 ALMRFRYVSETWNSLIFDPTFVKLHLERSPKN----THVLLEFQAIYDRDVGQQV----- 155
Query: 87 QQLVSLAFYDDRKSLTSCYVQSLLENPLAPLETCRFNVQTKWVH---ILGSCNGLLCLA- 142
+ C ++ L+ENP ++ C T + H I GSCNGL+C+
Sbjct: 156 -------------GVAPCSIRRLVENPSFTIDDCL----TLFKHTNSIFGSCNGLVCMTK 284
Query: 143 -------DRSCLFRLMNPFTRLASKRSPPLDVR 168
+ C +RL NP T + S+ SPPL ++
Sbjct: 285 CFDVREFEEECQYRLWNPATGIMSEYSPPLCIQ 383
>TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (13%)
Length = 693
Score = 61.6 bits (148), Expect = 6e-10
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +1
Query: 284 LEVLSNRLCLCY-FNDIHCVVWLIKKYGNQQSWKKLMLIPHSKLNMAMPMPIHASCCLRP 342
L VL LC+ Y + H VVW++K YG ++SW KL+ IP+ +P P + S P
Sbjct: 4 LGVLQGCLCMNYDYKKTHFVVWMMKDYGARESWVKLVSIPY------VPNPENFSYS-GP 162
Query: 343 LCISENGIVFMRTIDLQLVSYNTKNGSSDDPEINMGRYRRDDMHIYHESLISP 395
ISENG V + + L+ YN ++ S P+I G+ D +Y E+L+SP
Sbjct: 163 YYISENGEVLL-MFEFDLILYNPRDNSFKYPKIESGK-GWFDAEVYVETLVSP 315
>TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (5%)
Length = 710
Score = 61.2 bits (147), Expect = 8e-10
Identities = 25/63 (39%), Positives = 38/63 (59%)
Frame = +1
Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRLASL 70
LP+ L+ EIL + VS+ + +CVCK WK+L+ DPQF K H TS S +T + + +
Sbjct: 196 LPEGLMIEILVWIRVSNPLQLRCVCKRWKSLVVDPQFVKKHLHTSLSDITDLASNAMEDM 375
Query: 71 GCY 73
+
Sbjct: 376 NAF 384
>BM121480
Length = 917
Score = 57.0 bits (136), Expect = 1e-08
Identities = 51/155 (32%), Positives = 74/155 (46%), Gaps = 13/155 (8%)
Frame = +3
Query: 131 ILGSCNGLLCLA-DRSCLFRLMNPFTRLASKRSPPLDVRSPPVDLDVRDDVIT-QYGFGY 188
ILGSC GL+ L D S L NP L + P + RDD+ + YGFGY
Sbjct: 234 ILGSCRGLVLLYYDDSANLILWNP--SLGRHKXLP----------NYRDDITSFPYGFGY 377
Query: 189 DQVNNKYKVLITYGFPRV-----TKLYTFGTKSW--TTIQNFPCDHQVPWRWWDKQGKFV 241
D+ ++Y +LI G P+ +Y+F T+SW TI P + G +
Sbjct: 378 DESKDEY-LLILIGLPKFGPETGADIYSFKTESWKTDTIVYDPLXRYXAEDXIARAGSLL 554
Query: 242 SGSLNWWVPERNG----IISFDLEKETYGEVLLPL 272
+G+L+W+V + II+FDL + T + LPL
Sbjct: 555 NGALHWFVFSESKXDHVIIAFDLVERTLSXIPLPL 659
Score = 37.0 bits (84), Expect = 0.016
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 2 RQPHSRLPWLPDELIFEILFRVPVSSVMSFKCV 34
++ + L LP ELI EIL R+PV S++ FKCV
Sbjct: 39 KKQNQSLTTLPQELIREILLRLPVKSLLRFKCV 137
>BM143422
Length = 424
Score = 56.6 bits (135), Expect = 2e-08
Identities = 26/42 (61%), Positives = 31/42 (72%)
Frame = +1
Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHY 52
LP +LI IL ++PV SV FKCVCKSW +LISDPQF H+
Sbjct: 229 LPLDLIELILLKLPVKSVTRFKCVCKSWLSLISDPQFGFSHF 354
>TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g23880
{Arabidopsis thaliana;} , partial (10%)
Length = 631
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = -2
Query: 10 WLPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHY 52
+LP E+I EIL R+PV S+ SFK VCKS +LIS+P FAK H+
Sbjct: 543 FLPQEIIIEILLRLPVKSLPSFKFVCKS*LSLISNPHFAKWHF 415
>AI443156
Length = 414
Score = 48.1 bits (113), Expect = 7e-06
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Frame = +3
Query: 6 SRLPWLPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQ 65
S + LP E++ EIL R+PV SV+ + CK W+++I F H S +S+
Sbjct: 75 SNMANLPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFILFHLNKSHTSLILRHRS 254
Query: 66 RLASL---GCYDRTPFSSVTSLTFQQLVSLAFYDDRKSLTSCYVQSLLENPLAPLETCRF 122
+L SL D PF L CY S
Sbjct: 255 QLYSLDLKSLLDPNPFELSHPL------------------MCYSNS-------------- 338
Query: 123 NVQTKWVHILGSCNGLLCLADRSCLFRLMNP 153
+ +LGS NGLLC+++ L NP
Sbjct: 339 ------IKVLGSSNGLLCISNVXDDIALWNP 413
>TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragment),
partial (5%)
Length = 1232
Score = 45.4 bits (106), Expect = 4e-05
Identities = 35/117 (29%), Positives = 55/117 (46%), Gaps = 7/117 (5%)
Frame = +2
Query: 240 FVSGSLNWWVPER------NGIISFDLEKETYGEVLLPLHMGGDHPFNHVLEVLSNRLCL 293
FV SL+W V + + I++FDL E + E+ LP G F + +L + LC+
Sbjct: 2 FVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTELPLPDTGGVGGGFEIDVALLGDSLCM 181
Query: 294 CY-FNDIHCVVWLIKKYGNQQSWKKLMLIPHSKLNMAMPMPIHASCCLRPLCISENG 349
F++ VW++++Y SW KL + S + CLRPL S +G
Sbjct: 182 TVNFHNSKMDVWVMREYNRGDSWCKLFTLEESA*VEIV------QXCLRPLGYSSDG 334
>TC234332
Length = 644
Score = 43.9 bits (102), Expect = 1e-04
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Frame = +2
Query: 236 KQGKFVSGSLNWWVPERNG--------------IISFDLEKETYGEVLLP---LHMGGDH 278
+ G V G++NW + I S+DL+ E+Y +L+P L +
Sbjct: 14 QDGASVRGTVNWLALPNSSSDYQWETVTIDDLVIFSYDLKNESYRYLLMPDGLLEVPHSP 193
Query: 279 PFNHVLEVLSNRLCLCY-FNDIHCVVWLIKKYGNQQSWKKLMLIPHSKLNMAMPMPIHAS 337
P L VL LCL + H WL+K++G ++SW + + I + +L+ IH
Sbjct: 194 P---ELVVLKGCLCLSHRHGGNHFGFWLMKEFGVEKSWTRFLNISYDQLH------IHGG 346
Query: 338 CCLRP--LCISE-NGIVFMRTIDL-QLVSYNTKNGSSD-DPEINMGRYR 381
P LC+SE +G+V + + + YN ++ + + E++ GR++
Sbjct: 347 FLDHPVILCMSEDDGVVLLENGGHGKFILYNKRDNTIECYGELDKGRFQ 493
>BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 394
Score = 42.7 bits (99), Expect = 3e-04
Identities = 41/133 (30%), Positives = 57/133 (42%)
Frame = +1
Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRLASL 70
LP E++ EIL R+PV S++ F+ KSWK+LI D Q + T ++ S T L
Sbjct: 40 LPREVLTEILSRLPVRSLLRFRSTSKSWKSLI-DSQHLNWLHLTRSLTLASNTSLILRVD 216
Query: 71 GCYDRTPFSSVTSLTFQQLVSLAFYDDRKSLTSCYVQSLLENPLAPLETCRFNVQTKWVH 130
+T F T VSL CY S +
Sbjct: 217 SDLYQTNFP-----TLDPPVSL------NHPLMCYSNS--------------------IT 303
Query: 131 ILGSCNGLLCLAD 143
+LGSCNGLLC+++
Sbjct: 304 LLGSCNGLLCISN 342
>TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%)
Length = 1228
Score = 42.0 bits (97), Expect = 5e-04
Identities = 66/298 (22%), Positives = 101/298 (33%), Gaps = 13/298 (4%)
Frame = +1
Query: 25 VSSVMSFKCVCKSWKTLISDPQFAKDHYRTSFSSVTSMTHQRLASLGCYDRTPFSSVTSL 84
V S+ FK VCK W L D F + + S + + S +T V +L
Sbjct: 1 VKSLFRFKTVCKLWYRLSLDKYFVQLYNEVSRKNPMILVE---ISDSSESKTSLICVDNL 171
Query: 85 TFQQLVSLAFYDDRKSLTSCYVQSLLENPLAPLETCRFNVQTKWVHILGSCNGLLC---L 141
S F +DR V + SCNGLLC +
Sbjct: 172 RGVSEFSFIFLNDR------------------------------VKVRASCNGLLCCSSI 261
Query: 142 ADRSCLFRLMNPFTRLASKRSPPLDVRSPPVDLDVRDDVITQYGFGYDQVNNKYKVLITY 201
D+ +F + NP TR R P R V D T G D K+ V++
Sbjct: 262 PDKG-VFYVCNPVTR--EYRLLPKS-RERHVTRFYPDGEATLVGLACDSAYRKFNVVLA- 426
Query: 202 GFPR----------VTKLYTFGTKSWTTIQNFPCDHQVPWRWWDKQGKFVSGSLNWWVPE 251
G+ R + ++ W +F DH Q FV+ +L+W
Sbjct: 427 GYHRMFGHRPDGSFICLVFDSELNKWRKFVSFQDDHFTHMN--KNQVVFVNNALHWLTAS 600
Query: 252 RNGIISFDLEKETYGEVLLPLHMGGDHPFNHVLEVLSNRLCLCYFNDIHCVVWLIKKY 309
I+ DL E + ++ LP + L L + ++ +W++K Y
Sbjct: 601 STYILVLDLSCEVWRKMQLPYDLICGTGNRIYLLDFDGCLSVIKISEAWMNIWVLKDY 774
>TC229223 similar to UP|Q9XI00 (Q9XI00) F8K7.20 protein (At1g21760), partial
(96%)
Length = 1096
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 11 LPDELIFEILFRVPVSSVMSFKCVCKSWKTLISDPQF 47
LPDEL+FE+ R+ + CVC+ WK I +P F
Sbjct: 322 LPDELLFEVFARMTPYDLGKASCVCRKWKYTIRNPVF 432
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,721,771
Number of Sequences: 63676
Number of extensions: 421548
Number of successful extensions: 3356
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3336
length of query: 396
length of database: 12,639,632
effective HSP length: 99
effective length of query: 297
effective length of database: 6,335,708
effective search space: 1881705276
effective search space used: 1881705276
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0314.20