TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0314.19
         (86 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC217967 homologue to UP|Q9LX13 (Q9LX13) (3R)-hydroxymyristoyl-[...   152  4e-38
TC217966 homologue to UP|Q9LX13 (Q9LX13) (3R)-hydroxymyristoyl-[...   149  3e-37
BM892038                                                               25  5.2
BU927340 similar to GP|18087570|gb AT3g54650/T5N23_10 {Arabidops...    25  6.8
TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin...    25  6.8
BU927365                                                               25  8.9
TC229029 similar to UP|Q84XI2 (Q84XI2) Glycosyl hydrolase, parti...    25  8.9

>TC217967 homologue to UP|Q9LX13 (Q9LX13) (3R)-hydroxymyristoyl-[acyl carrier
           protein] dehydratase-like protein (At5g10160), partial
           (49%)
          Length = 590

 Score =  152 bits (383), Expect = 4e-38
 Identities = 78/86 (90%), Positives = 80/86 (92%)
 Frame = +3

Query: 1   LLLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSFE 60
           LLLQAMAQVG LVMLQPE GGSRENFFF GIDKVRF KPVIAGDTLVMRMTLTKLQK F 
Sbjct: 180 LLLQAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLTKLQKRFG 359

Query: 61  LAKMEGKAYVGGEVVCEGEFLMAIGS 86
           +AKMEGKAYVGGEVVCEGEFLMA+GS
Sbjct: 360 IAKMEGKAYVGGEVVCEGEFLMAMGS 437


>TC217966 homologue to UP|Q9LX13 (Q9LX13) (3R)-hydroxymyristoyl-[acyl carrier
           protein] dehydratase-like protein (At5g10160), partial
           (71%)
          Length = 910

 Score =  149 bits (375), Expect = 3e-37
 Identities = 75/86 (87%), Positives = 80/86 (92%)
 Frame = +2

Query: 1   LLLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQKSFE 60
           L+++AMAQVG LVMLQPE GGSRENFFF GIDKVRF KPVIAGDTLVMRMTLTKLQK F 
Sbjct: 503 LMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLTKLQKRFG 682

Query: 61  LAKMEGKAYVGGEVVCEGEFLMAIGS 86
           +AKMEGKAYVGGEVVCEGEFLMA+GS
Sbjct: 683 IAKMEGKAYVGGEVVCEGEFLMAMGS 760


>BM892038 
          Length = 422

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -3

Query: 17  PEGGG----SRENFFFVGIDKVRFCKPVIAGDTLVMRMTLTKLQK-SFELAKMEGKAYVG 71
           P GGG     +  F  V   KV F   ++ G   + R    ++++ SF    +EG+  +G
Sbjct: 309 PGGGGRFSGEKREFMVVL*KKVVFLLVMVLGRVQIGRRRRRRIRRRSFGNGDLEGRRCIG 130

Query: 72  GEV 74
           GE+
Sbjct: 129 GEM 121


>BU927340 similar to GP|18087570|gb AT3g54650/T5N23_10 {Arabidopsis
           thaliana}, partial (23%)
          Length = 446

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 6/43 (13%)
 Frame = +2

Query: 40  VIAGDTLVMRMTLTKL------QKSFELAKMEGKAYVGGEVVC 76
           +   DT V R++  +L      +KS +  KMEG + +GG V+C
Sbjct: 68  ISVSDTAVNRISGVELARFVADKKSLKSLKMEGCSNLGGFVLC 196


>TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin response
           factor ARF17 {Arabidopsis thaliana;} , partial (17%)
          Length = 958

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 20  GGSRENFFFVGIDKVRFCKPVIAGDTLV 47
           G  R +FF +G  K    K ++AGDT++
Sbjct: 392 GTPRHHFFTIGWSKFVNHKKLVAGDTVI 475


>BU927365 
          Length = 445

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = -1

Query: 52  LTKLQKSFELAKMEGKAYVGGEVVCEGE 79
           + KL+ +F LAK  G + +  E VCE E
Sbjct: 274 VAKLRSNFVLAKPGGTSGLAAEGVCERE 191


>TC229029 similar to UP|Q84XI2 (Q84XI2) Glycosyl hydrolase, partial (12%)
          Length = 808

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 11/38 (28%), Positives = 20/38 (51%)
 Frame = +3

Query: 40  VIAGDTLVMRMTLTKLQKSFELAKMEGKAYVGGEVVCE 77
           ++ G+TL + ++    Q       + G  Y GGE++CE
Sbjct: 570 LVPGETLPINISFDVPQGVTPRVILHGWNYDGGEIICE 683


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.142    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,864,156
Number of Sequences: 63676
Number of extensions: 25283
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of query: 86
length of database: 12,639,632
effective HSP length: 62
effective length of query: 24
effective length of database: 8,691,720
effective search space: 208601280
effective search space used: 208601280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)