BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0314.16
(185 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227466 similar to UP|Q9FMI9 (Q9FMI9) Similarity to nonspecific... 177 3e-45
TC227465 similar to UP|Q6I6X1 (Q6I6X1) Xylogen protein 1, partia... 172 6e-44
TC227464 similar to UP|Q8VYI9 (Q8VYI9) AT5g64080/MHJ24_6, partia... 166 6e-42
TC205526 weakly similar to UP|Q8VYI9 (Q8VYI9) AT5g64080/MHJ24_6,... 144 2e-35
TC215660 similar to UP|Q9LJ86 (Q9LJ86) Gb|AAD48513.1 (AT3g22600/... 72 2e-13
TC203510 weakly similar to UP|Q9ZVC7 (Q9ZVC7) Expressed protein,... 71 3e-13
TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 70 4e-13
TC210593 weakly similar to UP|Q9LJ86 (Q9LJ86) Gb|AAD48513.1 (AT3... 67 6e-12
TC221444 weakly similar to UP|Q8H574 (Q8H574) Protease inhibitor... 62 1e-10
TC209678 weakly similar to GB|AAP12845.1|30017223|BT006196 At2g4... 62 2e-10
TC225985 weakly similar to UP|Q6Z387 (Q6Z387) Lipid transfer pro... 57 4e-09
TC225984 weakly similar to UP|Q6Z387 (Q6Z387) Lipid transfer pro... 57 6e-09
TC215376 similar to UP|UGP5_ARATH (Q9C7F7) Uncharacterized GPI-a... 52 2e-07
TC215375 weakly similar to UP|UGP5_ARATH (Q9C7F7) Uncharacterize... 51 3e-07
TC221839 weakly similar to UP|Q6YZD3 (Q6YZD3) Lipid transfer pro... 50 6e-07
TC213624 weakly similar to UP|Q9LR49 (Q9LR49) T25N20.10, partial... 47 4e-06
TC224710 similar to UP|Q8ZZP6 (Q8ZZP6) Conserved protein, partia... 44 4e-05
TC214266 weakly similar to UP|NLT1_ARATH (Q42589) Nonspecific li... 43 1e-04
TC220941 weakly similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 pro... 42 2e-04
TC227679 similar to UP|NLT3_PRUDU (Q43019) Nonspecific lipid-tra... 42 2e-04
>TC227466 similar to UP|Q9FMI9 (Q9FMI9) Similarity to nonspecific
lipid-transfer protein, partial (51%)
Length = 674
Score = 177 bits (448), Expect = 3e-45
Identities = 90/121 (74%), Positives = 104/121 (85%), Gaps = 4/121 (3%)
Frame = +3
Query: 1 MASKVSLILCV--VAICAVDFAHSASSNN--APAPSADCSNLILKMTDCLSFVTNDSTVT 56
MASK++LI V VA+CAVD HSAS+++ APAPS DC+NL+L M DCLSFVTN STVT
Sbjct: 51 MASKLTLIALVLAVALCAVDLTHSASASSPHAPAPSVDCTNLVLTMADCLSFVTNGSTVT 230
Query: 57 KPQGQCCSGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPSACKVSASNSVTNCGC 116
KP+G CCSGLKSVLKTAP+CLCEAFKSS+QFGVVLNVTKA +LP+ACKVSA S TNCGC
Sbjct: 231 KPEGTCCSGLKSVLKTAPACLCEAFKSSAQFGVVLNVTKATSLPAACKVSAP-SATNCGC 407
Query: 117 E 117
+
Sbjct: 408 Q 410
>TC227465 similar to UP|Q6I6X1 (Q6I6X1) Xylogen protein 1, partial (53%)
Length = 488
Score = 172 bits (437), Expect = 6e-44
Identities = 89/119 (74%), Positives = 102/119 (84%), Gaps = 4/119 (3%)
Frame = +2
Query: 1 MASKVSLILCV--VAICAVDFAHSASSNN--APAPSADCSNLILKMTDCLSFVTNDSTVT 56
MASK++LI V VA+CAVD HSAS+++ APAPS DC+NL+L M DCLSFVTN STVT
Sbjct: 44 MASKLTLIALVLAVALCAVDLTHSASASSPHAPAPSVDCTNLVLTMADCLSFVTNGSTVT 223
Query: 57 KPQGQCCSGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPSACKVSASNSVTNCG 115
KP+G CCSGLKSVLKTAP+CLCEAFKSS+QFGVVLNVTKA +LP+ACKVSA S TNCG
Sbjct: 224 KPEGTCCSGLKSVLKTAPACLCEAFKSSAQFGVVLNVTKATSLPAACKVSAP-SATNCG 397
>TC227464 similar to UP|Q8VYI9 (Q8VYI9) AT5g64080/MHJ24_6, partial (53%)
Length = 829
Score = 166 bits (420), Expect = 6e-42
Identities = 87/118 (73%), Positives = 97/118 (81%), Gaps = 5/118 (4%)
Frame = +2
Query: 3 SKVSLI-LCVVAICAVDFAHSASSNN----APAPSADCSNLILKMTDCLSFVTNDSTVTK 57
SK++LI L V A+CAVD ASS++ APAPS DCSNL+L M DCLSFVTN STVTK
Sbjct: 17 SKLTLIALVVAALCAVDLTQRASSSSSSPHAPAPSVDCSNLVLTMADCLSFVTNGSTVTK 196
Query: 58 PQGQCCSGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPSACKVSASNSVTNCG 115
P+G CCSGLKSVLKTAP+CLCEAFKSS+QFGVVLNVTKA LP+ACKVSA S TNCG
Sbjct: 197 PEGTCCSGLKSVLKTAPACLCEAFKSSAQFGVVLNVTKATTLPAACKVSAP-SATNCG 367
>TC205526 weakly similar to UP|Q8VYI9 (Q8VYI9) AT5g64080/MHJ24_6, partial
(59%)
Length = 942
Score = 144 bits (363), Expect = 2e-35
Identities = 72/117 (61%), Positives = 89/117 (75%), Gaps = 2/117 (1%)
Frame = +3
Query: 1 MASKVSLILCVVAICAVDFAHSASSNNAPAP--SADCSNLILKMTDCLSFVTNDSTVTKP 58
M +K LI+CVVAI AVD S+ APAP S +CSNL+L ++DCL+FV+N STVTKP
Sbjct: 81 MTAKWYLIVCVVAIWAVDLGSSSHHARAPAPAPSVECSNLVLTLSDCLTFVSNGSTVTKP 260
Query: 59 QGQCCSGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPSACKVSASNSVTNCG 115
QG CCS LK+VL TAP CLCEAF SS+Q G+ +NVTKA+ LP+ACK+S + S NCG
Sbjct: 261 QGTCCSSLKTVLNTAPKCLCEAFNSSAQLGLAINVTKAVTLPAACKLS-TPSAANCG 428
>TC215660 similar to UP|Q9LJ86 (Q9LJ86) Gb|AAD48513.1 (AT3g22600/F16J14_17),
partial (48%)
Length = 797
Score = 71.6 bits (174), Expect = 2e-13
Identities = 40/103 (38%), Positives = 62/103 (59%), Gaps = 2/103 (1%)
Frame = +3
Query: 5 VSLILCVVA-ICAVDFAHSASSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQCC 63
+ L+L V+A +CA A S SS C+N+++ ++ CL+++T +S+ P CC
Sbjct: 96 MGLVLVVMAMLCAGAAAQSQSS---------CTNVLVSLSPCLNYITGNSST--PSSGCC 242
Query: 64 SGLKSVLKTAPSCLCEAFK-SSSQFGVVLNVTKALALPSACKV 105
S L SV+++ P CLC+ S G+ +N T+ALALP ACKV
Sbjct: 243 SQLASVVRSQPQCLCQVLSGGGSSLGININQTQALALPVACKV 371
>TC203510 weakly similar to UP|Q9ZVC7 (Q9ZVC7) Expressed protein, partial
(24%)
Length = 975
Score = 71.2 bits (173), Expect = 3e-13
Identities = 36/103 (34%), Positives = 57/103 (54%), Gaps = 1/103 (0%)
Frame = +1
Query: 5 VSLILCVVAICAVDFAHSASSNNAPAPSAD-CSNLILKMTDCLSFVTNDSTVTKPQGQCC 63
V + L + +C V A S ++ APAP ++ C + M+DCL++V + S + KP CC
Sbjct: 175 VVITLVLALVCCVTSAQSPAA--APAPESNGCLMALTNMSDCLTYVEDGSKLAKPDKGCC 348
Query: 64 SGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPSACKVS 106
L ++ + P CLCE G+ +++ KAL LPS C V+
Sbjct: 349 PELAGLIDSNPICLCELLGKPDSIGIKIDLNKALKLPSVCGVT 477
>TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (52%)
Length = 1448
Score = 70.5 bits (171), Expect = 4e-13
Identities = 37/109 (33%), Positives = 59/109 (53%), Gaps = 3/109 (2%)
Frame = -2
Query: 1 MASKVSLILCVVAICAVDFAHSASSNNAPAPSAD---CSNLILKMTDCLSFVTNDSTVTK 57
MA+ V+L+L + A C + S A AP+ + C + M+DCL++V + S ++K
Sbjct: 874 MATIVTLVLAL-ACCGMSAPTSVPKTTAAAPAPESNGCLMALANMSDCLTYVEDGSKLSK 698
Query: 58 PQGQCCSGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPSACKVS 106
P CC L ++ + P CLCE G+ +++ KAL LPS C V+
Sbjct: 697 PDKGCCPELAGLVDSNPICLCEMLGKPDSIGIKIDLNKALKLPSVCGVT 551
>TC210593 weakly similar to UP|Q9LJ86 (Q9LJ86) Gb|AAD48513.1
(AT3g22600/F16J14_17), partial (56%)
Length = 728
Score = 66.6 bits (161), Expect = 6e-12
Identities = 33/98 (33%), Positives = 55/98 (55%), Gaps = 1/98 (1%)
Frame = +2
Query: 9 LCVVAICAVDFAHSASSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQCCSGLKS 68
LC+VA+ A+ + A + C+N + ++ CL+++ S+ P CCS L S
Sbjct: 125 LCLVAVIV------ATMWSQNAAQSGCTNTLTSLSPCLNYIMGSSST--PSASCCSQLSS 280
Query: 69 VLKTAPSCLCEAFK-SSSQFGVVLNVTKALALPSACKV 105
+++++P CLC S FG+ +N T AL+LP AC+V
Sbjct: 281 IVQSSPQCLCSVLNGGGSTFGITINQTLALSLPGACEV 394
>TC221444 weakly similar to UP|Q8H574 (Q8H574) Protease inhibitor-like
protein, partial (32%)
Length = 657
Score = 62.4 bits (150), Expect = 1e-10
Identities = 31/90 (34%), Positives = 54/90 (59%), Gaps = 3/90 (3%)
Frame = +1
Query: 28 APAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQCCSGLKSVLKTAPSCLCEAFK---SS 84
A + + C+N+ + ++ CL +VT ++++ P CCS L V+++ P CLCE SS
Sbjct: 148 AQSDQSSCTNVFISLSPCLDYVTENASI--PSSSCCSQLAFVVRSQPLCLCEVVNGGASS 321
Query: 85 SQFGVVLNVTKALALPSACKVSASNSVTNC 114
+N T+ALALP++C V + S+++C
Sbjct: 322 IAASFNINQTRALALPTSCNVQ-TPSISSC 408
>TC209678 weakly similar to GB|AAP12845.1|30017223|BT006196 At2g44300
{Arabidopsis thaliana;} , partial (49%)
Length = 764
Score = 62.0 bits (149), Expect = 2e-10
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 1 MASKVSLILCVVAICAVDFAHSASSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQG 60
M S L+L VV + V FA S S + +C++ ++ + C+ +V ++ P
Sbjct: 59 MISNPMLMLLVVVLLVVGFAKSDLSKDRE----ECADKLIDLASCVPYVGGEAKT--PTI 220
Query: 61 QCCSGLKSVLKTAPSCLCEAFK--SSSQFGVVLNVTKALALPSACKVSASNSVTNC 114
CC+GLK+VL + CLC K G+ +N T A+ LPSAC A ++T C
Sbjct: 221 DCCTGLKAVLDRSKKCLCILIKDRDDPNLGIKINATLAIQLPSACHSPA--NITQC 382
>TC225985 weakly similar to UP|Q6Z387 (Q6Z387) Lipid transfer protein-like,
partial (40%)
Length = 1027
Score = 57.4 bits (137), Expect = 4e-09
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 33 ADCSNLILKMTDCLSFVTNDSTVTKPQGQCCSGLKSVLKTAPSCLCEAFK--SSSQFGVV 90
A+C++ +L + CLS+V ++ V P CCSG+K V+ + CLC K G+
Sbjct: 165 AECTDKLLGLAGCLSYVGGEAKV--PTMDCCSGIKEVINKSKRCLCILIKDRDDPSLGLK 338
Query: 91 LNVTKALALPSACKVSASNSVTNC 114
+NVT AL LP C+ ++T C
Sbjct: 339 INVTLALNLPDVCE--TPTNITQC 404
>TC225984 weakly similar to UP|Q6Z387 (Q6Z387) Lipid transfer protein-like,
partial (28%)
Length = 1140
Score = 56.6 bits (135), Expect = 6e-09
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +2
Query: 33 ADCSNLILKMTDCLSFVTNDSTVTKPQGQCCSGLKSVLKTAPSCLCEAFK--SSSQFGVV 90
A+C++ +L + CL +V ++ V P CCSG++ V+ + CLC K G+
Sbjct: 233 AECTDKLLGLAGCLPYVGGEAKV--PAMDCCSGIREVIDKSKRCLCILIKDRDDPNLGLK 406
Query: 91 LNVTKALALPSACKVSASNSVTNC 114
+NVT AL+LP AC+ ++T C
Sbjct: 407 INVTLALSLPDACQ--TPTNITQC 472
>TC215376 similar to UP|UGP5_ARATH (Q9C7F7) Uncharacterized GPI-anchored
protein At1g27950 precursor, partial (24%)
Length = 1023
Score = 51.6 bits (122), Expect = 2e-07
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 24 SSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQCCSGLKSVLKTAPSCLC----E 79
S++ A + CS +I K+ CL F P+ QCC S+ ++ P CLC E
Sbjct: 152 SASGADDLATKCSAVIQKVIPCLDFAKGKEET--PKKQCCDAATSIKESNPECLCYIIEE 325
Query: 80 AFKSSSQF-GVVLNVTKALALPSACKVSASNSVTNC 114
K S Q + + K L LPS C V + S+TNC
Sbjct: 326 THKGSPQVKSLGIQEAKLLQLPSVCNVK-NASITNC 430
>TC215375 weakly similar to UP|UGP5_ARATH (Q9C7F7) Uncharacterized
GPI-anchored protein At1g27950 precursor, partial (45%)
Length = 879
Score = 51.2 bits (121), Expect = 3e-07
Identities = 32/96 (33%), Positives = 48/96 (49%), Gaps = 5/96 (5%)
Frame = +1
Query: 24 SSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQCCSGLKSVLKTAPSCLC----E 79
S+ A + CS +I K+ CL+F T + P+ +CC ++ ++ P CLC E
Sbjct: 79 SATAADDLATKCSAVIQKVIPCLNFATGKEEM--PKKECCDAATAIKESNPECLCYIIQE 252
Query: 80 AFKSSSQF-GVVLNVTKALALPSACKVSASNSVTNC 114
K S Q + + K L LPS C V + S+TNC
Sbjct: 253 THKGSPQVKSLGIQEAKLLQLPSVCNVK-NASITNC 357
>TC221839 weakly similar to UP|Q6YZD3 (Q6YZD3) Lipid transfer protein-like,
partial (37%)
Length = 476
Score = 50.1 bits (118), Expect = 6e-07
Identities = 29/88 (32%), Positives = 43/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 32 SADCSNLILKMTDCLSFVTNDSTVTKPQGQCCSGLKSVLKTAPSCLCEAFK-----SSSQ 86
+A C+ L+ K+ CL+F T + V P CC + K+ P CLC A + S
Sbjct: 77 AAKCNLLVQKVLPCLNFATGQAAV--PTKDCCEATSEIKKSDPECLCFAIQQTHKGSPEV 250
Query: 87 FGVVLNVTKALALPSACKVSASNSVTNC 114
+ + + L LPSAC + + S TNC
Sbjct: 251 KNMGIQEARLLQLPSACNLK-NASTTNC 331
>TC213624 weakly similar to UP|Q9LR49 (Q9LR49) T25N20.10, partial (26%)
Length = 313
Score = 47.4 bits (111), Expect = 4e-06
Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 3/64 (4%)
Frame = +2
Query: 45 CLSFVTNDS---TVTKPQGQCCSGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPS 101
C++F+TN S T P +CC+ +KS+ CLC + F + +N T A++LP
Sbjct: 5 CMNFLTNSSGNGNGTSPTAECCNSIKSLTSGGMDCLCLIMTGNVPFRIPINRTLAISLPR 184
Query: 102 ACKV 105
C +
Sbjct: 185 TCNL 196
>TC224710 similar to UP|Q8ZZP6 (Q8ZZP6) Conserved protein, partial (5%)
Length = 787
Score = 43.9 bits (102), Expect = 4e-05
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +3
Query: 5 VSLILCVVAICAVDFAHSASSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQCCS 64
VSL+L +V + ++ A S SS C+ ++ C++F+ +T P CC
Sbjct: 114 VSLVLALVLMRSLAEAQSGSSTT-------CAQ---ELIPCVNFLNGTTT---PPSSCCD 254
Query: 65 GLKSVLKTAPSCLCEAFKSSSQF-GVVLNVTKALALPSACKVSASNSVTNC 114
LK ++ CLC F S ++V +ALAL C V +N +T+C
Sbjct: 255 PLKQTVENQLDCLCNIFFSPGLLQSFNVSVDQALALSRRCGV--TNGITSC 401
>TC214266 weakly similar to UP|NLT1_ARATH (Q42589) Nonspecific lipid-transfer
protein 1 precursor (LTP 1), partial (36%)
Length = 699
Score = 42.7 bits (99), Expect = 1e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Frame = +3
Query: 5 VSLILCVVAICAVDFAHSASSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQCCS 64
V +I+C+ + A A + + C+++ + M CLS++ T P CCS
Sbjct: 105 VVVIMCMAVVGAPMMAQAMT----------CNDVTVNMAQCLSYLMQGGT---PSTLCCS 245
Query: 65 GLKSVLKTA-----PSCLCEAFKSSSQFGVVLNVTKALALPSACKVSASNSV---TNC 114
G+K++L +A +C K+ + +N A ALP CKV+ + TNC
Sbjct: 246 GVKNILGSAVTTVDKQTVCNCLKADAA-RYNINDQYAQALPGFCKVNVPYKISRSTNC 416
>TC220941 weakly similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 protein,
partial (57%)
Length = 433
Score = 41.6 bits (96), Expect = 2e-04
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +2
Query: 42 MTDCLSFVTNDSTVTKPQGQCCSGLKSVLKTAPSCLCEAFKSSSQFGVVLNVTKALALPS 101
++ CL V+N K CC+ + ++LKTAP CLC S +N A+ +P
Sbjct: 212 LSPCLGAVSN--VRAKVPLACCARVGALLKTAPRCLCAVLLSPLAKQAKINPATAITIPK 385
Query: 102 ACKVSASNSVTNCG 115
C + + CG
Sbjct: 386 RCNIRNRPAGKKCG 427
>TC227679 similar to UP|NLT3_PRUDU (Q43019) Nonspecific lipid-transfer
protein 3 precursor (LTP 3), partial (40%)
Length = 659
Score = 41.6 bits (96), Expect = 2e-04
Identities = 32/112 (28%), Positives = 53/112 (46%), Gaps = 8/112 (7%)
Frame = +2
Query: 3 SKVSLILCVVAICAVDFAHSASSNNAPAPSADCSNLILKMTDCLSFVTNDSTVTKPQGQC 62
S V +L + +C V S + A + C+ ++ +T C+S+V N G C
Sbjct: 86 SVVEKLLWMAIVCLVLGVISITPKAQAAVT--CNQVVSNLTPCISYVLNGGKTVP--GPC 253
Query: 63 CSGLKSVLKTAPS-----CLCEAFK---SSSQFGVVLNVTKALALPSACKVS 106
C+G+K++ A S +C+ K S+ +G NV +A ALP C V+
Sbjct: 254 CNGIKTLFNLAHSTPDRQTVCKCIKNAVSAFHYG-KSNVDRAAALPKQCGVN 406
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,645,052
Number of Sequences: 63676
Number of extensions: 219343
Number of successful extensions: 2235
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 2204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of query: 185
length of database: 12,639,632
effective HSP length: 91
effective length of query: 94
effective length of database: 6,845,116
effective search space: 643440904
effective search space used: 643440904
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0314.16