BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0314.12
(180 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221713 101 2e-22
TC228465 similar to GB|AAP37703.1|30725362|BT008344 At5g02600 {A... 97 3e-21
TC225742 UP|Q9SE03 (Q9SE03) Copper chaperone homolog CCH, complete 72 1e-13
TC209089 similar to UP|Q9SE03 (Q9SE03) Copper chaperone homolog ... 72 1e-13
TC228011 UP|Q9SE03 (Q9SE03) Copper chaperone homolog CCH, partia... 72 1e-13
TC203968 homologue to UP|Q6J338 (Q6J338) Copper chaperone, parti... 70 7e-13
TC203984 similar to UP|Q6J338 (Q6J338) Copper chaperone, partial... 69 2e-12
TC215669 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, part... 60 6e-10
TC211935 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F2... 57 5e-09
TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, part... 57 6e-09
TC227822 UP|Q9ZRD7 (Q9ZRD7) GMFP7 (Fragment), complete 56 8e-09
BG839100 55 1e-08
TC232572 weakly similar to UP|HDA1_HUMAN (Q13547) Histone deacet... 54 3e-08
TC213170 54 4e-08
TC231871 54 5e-08
AI495750 52 2e-07
TC210833 51 3e-07
BU760759 weakly similar to GP|14090380|dbj P0037C04.27 {Oryza sa... 50 4e-07
TC225702 UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (98%) 50 4e-07
BM307907 50 6e-07
>TC221713
Length = 641
Score = 101 bits (252), Expect = 2e-22
Identities = 47/86 (54%), Positives = 66/86 (76%)
Frame = +1
Query: 93 DQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESK 152
D V E ++ P KT N QVVV+RV++HC+ CA KV +H+SKMEGVTSF+ID+E+K
Sbjct: 166 DWVSESDKIPSNSHKTTLQN--QVVVLRVSLHCKACARKVTKHISKMEGVTSFSIDMEAK 339
Query: 153 RVTVMGHISPVVVLESISKVKRAEFW 178
+VT++GH++P+ VL S+SKVK A+ W
Sbjct: 340 KVTIIGHVTPLGVLASVSKVKNAQLW 417
>TC228465 similar to GB|AAP37703.1|30725362|BT008344 At5g02600 {Arabidopsis
thaliana;} , partial (35%)
Length = 1223
Score = 97.4 bits (241), Expect = 3e-21
Identities = 47/85 (55%), Positives = 63/85 (73%), Gaps = 2/85 (2%)
Frame = +3
Query: 96 EEENEPPKELQKT--PTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKR 153
+E N K T TD+ QVV +RV++HC+GC GKV++HLS+M GVTSFNID +K+
Sbjct: 624 DETNHSSKPSSSTLPKTDSSDQVVELRVSLHCKGCEGKVRKHLSRMRGVTSFNIDFAAKK 803
Query: 154 VTVMGHISPVVVLESISKVKRAEFW 178
VTV+G ++P+ VL SISKVK A+FW
Sbjct: 804 VTVVGDVTPLSVLASISKVKNAQFW 878
>TC225742 UP|Q9SE03 (Q9SE03) Copper chaperone homolog CCH, complete
Length = 828
Score = 72.0 bits (175), Expect = 1e-13
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +3
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q VV++V + CQGCAG V R L KMEGV SF+ID++ ++VTV G++ P VL+++SK K
Sbjct: 165 QTVVLKVGMSCQGCAGAVNRVLGKMEGVESFDIDLKEQKVTVKGNVEPDEVLQAVSKSGK 344
Query: 174 RAEFW 178
+ FW
Sbjct: 345 KTAFW 359
>TC209089 similar to UP|Q9SE03 (Q9SE03) Copper chaperone homolog CCH, partial
(85%)
Length = 649
Score = 72.0 bits (175), Expect = 1e-13
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +2
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q VV++V + CQGCAG V R L KMEGV SF+ID++ ++VTV G++ P VL+++SK K
Sbjct: 89 QTVVLKVGMSCQGCAGAVNRVLEKMEGVESFDIDLKEQKVTVKGNVQPDEVLQAVSKSGK 268
Query: 174 RAEFW 178
+ FW
Sbjct: 269 KTAFW 283
>TC228011 UP|Q9SE03 (Q9SE03) Copper chaperone homolog CCH, partial (98%)
Length = 1612
Score = 72.0 bits (175), Expect = 1e-13
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q VV++V + CQGCAG V R L KMEGV SF+ID++ ++VTV G++ P VL+++SK K
Sbjct: 1096 QTVVLKVGMSCQGCAGAVNRVLGKMEGVESFDIDLKEQKVTVKGNVEPDEVLQAVSKSGK 1275
Query: 174 RAEFW 178
+ FW
Sbjct: 1276 KTAFW 1290
>TC203968 homologue to UP|Q6J338 (Q6J338) Copper chaperone, partial (84%)
Length = 710
Score = 69.7 bits (169), Expect = 7e-13
Identities = 30/67 (44%), Positives = 48/67 (70%), Gaps = 1/67 (1%)
Frame = +2
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q VV++V + C+GC G VKR L K++GV S++ID++ ++V V G++ P VL+++SK K
Sbjct: 116 QTVVLKVGMSCEGCVGAVKRVLGKLDGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTGK 295
Query: 174 RAEFWNG 180
+ FW G
Sbjct: 296 KTTFWEG 316
>TC203984 similar to UP|Q6J338 (Q6J338) Copper chaperone, partial (86%)
Length = 619
Score = 68.6 bits (166), Expect = 2e-12
Identities = 30/67 (44%), Positives = 47/67 (69%), Gaps = 1/67 (1%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q VV++V + C+GC G VKR L K++GV S++ID++ ++V V G++ P VL ++SK K
Sbjct: 184 QTVVLKVGMSCEGCVGAVKRVLGKLDGVESYDIDLKEQKVVVKGNVQPDTVLATVSKTGK 363
Query: 174 RAEFWNG 180
+ FW G
Sbjct: 364 KTTFWEG 384
>TC215669 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (54%)
Length = 1305
Score = 60.1 bits (144), Expect = 6e-10
Identities = 31/107 (28%), Positives = 61/107 (56%)
Frame = +2
Query: 65 KLVQSRSRSTSSDRESVSRVPKIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIH 124
K+++ R + E +S +PK ++ Q EE+ +P E +K V + V++V +H
Sbjct: 455 KVLERIQRKSHRQVELLSPIPKPQEEKKVQEEEKPKPTPEEKKEEAQIV--MTVLKVGMH 628
Query: 125 CQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISK 171
C+ C+ ++KR + +M+GV S D+++ +V+V G P ++E + K
Sbjct: 629 CEACSQEIKRRIQRMKGVESAEPDLQNSQVSVKGVYDPAKLVEYVYK 769
Score = 49.7 bits (117), Expect = 8e-07
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = +2
Query: 68 QSRSRSTSSDRESVSRVPKIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQG 127
Q ++ + E ++ ++ + E E +E+ P +V++V +HC+G
Sbjct: 164 QPKAEEKKPEEEKKKEEAAAAEKPSEEKKPEQESKEEVAAPPPPPPPAEIVLKVFMHCEG 343
Query: 128 CAGKVKRHLSKMEGVTSFNIDVESKRVTVMGH-ISPVVVLESISK 171
CA KV+R L GV D +S +V V G P+ VLE I +
Sbjct: 344 CARKVRRSLKGFPGVDDVVTDCKSHKVVVKGEKADPLKVLERIQR 478
>TC211935 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F28L1_7
{Arabidopsis thaliana;} , partial (15%)
Length = 556
Score = 57.0 bits (136), Expect = 5e-09
Identities = 25/57 (43%), Positives = 39/57 (67%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISK 171
Q V++V IHC GC KVK+ L K++GV + ID E +VTV G++ P V+++ ++K
Sbjct: 376 QKCVLKVNIHCDGCKNKVKKILQKIDGVFTTEIDAEQGKVTVSGNVDPNVLIKKLAK 546
>TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (53%)
Length = 1127
Score = 56.6 bits (135), Expect = 6e-09
Identities = 31/107 (28%), Positives = 55/107 (50%)
Frame = +1
Query: 65 KLVQSRSRSTSSDRESVSRVPKIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIH 124
K+++ R + E +S +PK + +EE +P E K + VV++V +H
Sbjct: 313 KVLERVQRKSHRKVELLSPIPKPPAEEAKKPQEEEKPKPEENKQEPQVI--TVVLKVHMH 486
Query: 125 CQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISK 171
C+ CA ++KR + KM+GV S D++ V+V G ++E + K
Sbjct: 487 CEACAQEIKRRIEKMKGVESAEPDLKKSEVSVKGVFETAKLVEHVYK 627
Score = 52.8 bits (125), Expect = 9e-08
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Frame = +1
Query: 68 QSRSRSTSS----DRESVSRVPKIKQRNLDQVEEENEPPK-ELQKTPTDNVFQVVVMRVA 122
QS + +T+S E S+ K++++ +++ E++ E K + +K + +V++V
Sbjct: 7 QSAALNTNSTPMGQEEEKSQENKVEEKKVEEEEKKEEEKKSDEKKFKEKSAPPEIVLKVF 186
Query: 123 IHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGH-ISPVVVLESISK 171
+HC+GCA KV+R L GV D +S +V V G P+ VLE + +
Sbjct: 187 MHCEGCARKVRRSLKGFPGVEDILTDCKSHKVVVKGEKADPLKVLERVQR 336
>TC227822 UP|Q9ZRD7 (Q9ZRD7) GMFP7 (Fragment), complete
Length = 716
Score = 56.2 bits (134), Expect = 8e-09
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +1
Query: 114 FQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESIS--K 171
FQ V ++V + C+GC KVK+ + M+GVT +D ++ +VTV G++ P V+ I+
Sbjct: 160 FQTVEVKVKMDCEGCERKVKKSVEGMKGVTEVEVDRKASKVTVSGYVEPSKVVSRIAHRT 339
Query: 172 VKRAEFW 178
KRAE W
Sbjct: 340 GKRAELW 360
>BG839100
Length = 597
Score = 55.5 bits (132), Expect = 1e-08
Identities = 25/38 (65%), Positives = 32/38 (83%)
Frame = +1
Query: 141 GVTSFNIDVESKRVTVMGHISPVVVLESISKVKRAEFW 178
GVTSFNID +K+VTV+G ++P+ VL SISKVK A+FW
Sbjct: 157 GVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFW 270
>TC232572 weakly similar to UP|HDA1_HUMAN (Q13547) Histone deacetylase 1
(HD1), partial (5%)
Length = 674
Score = 54.3 bits (129), Expect = 3e-08
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +1
Query: 86 KIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSF 145
K +++ D+ +EE +PP V+ V +HC+GCA K++R++ KM GV
Sbjct: 394 KPEEKTEDEKKEEPKPPSPC------------VLFVDLHCEGCAKKIERYIMKMRGVEGV 537
Query: 146 NIDVESKRVTVMGHISPVVVLESISK 171
ID+ VT+ G + P + +I+K
Sbjct: 538 VIDMAKNEVTIKGIVEPQAICNTITK 615
>TC213170
Length = 589
Score = 53.9 bits (128), Expect = 4e-08
Identities = 27/73 (36%), Positives = 42/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 107 KTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVL 166
K Q V ++V + C GC KVK+ LS ++GV S I+ + ++VTV G++ P VL
Sbjct: 145 KNKNKKQLQTVELKVMMDCDGCVLKVKKALSSLDGVKSVEINRKQQKVTVTGYVEPNKVL 324
Query: 167 ESISKV-KRAEFW 178
+ + K+AE W
Sbjct: 325 KKANSTGKKAEIW 363
>TC231871
Length = 541
Score = 53.5 bits (127), Expect = 5e-08
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 114 FQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESI-SKV 172
FQ V ++V + C GC KVK LS + GV S I+ + ++VTV G++ P VL+ S
Sbjct: 82 FQTVELKVRMDCDGCELKVKNALSSLSGVKSVEINRKQQKVTVTGYVEPNKVLKKAKSTG 261
Query: 173 KRAEFW 178
K+AE W
Sbjct: 262 KKAEIW 279
>AI495750
Length = 309
Score = 51.6 bits (122), Expect = 2e-07
Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Frame = +1
Query: 104 ELQKTPTDNVFQVV-----VMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMG 158
E+++ PT+ + + + V++V+IHCQGC KVK+ L ++GV +ID+ ++V V G
Sbjct: 76 EIKEPPTEELLEPLMCKSCVLKVSIHCQGCTRKVKKILQSIDGVYCTSIDLRQQKVIVKG 255
Query: 159 HISPVVVLESISKV-KRA 175
++ +++ +++ KRA
Sbjct: 256 NVDSDTLIKKLTETGKRA 309
>TC210833
Length = 608
Score = 51.2 bits (121), Expect = 3e-07
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +3
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESI-SKVK 173
Q V +++ + C+GCA KVK L ++G S +D++ ++ TV G++ P VL++ S K
Sbjct: 111 QTVALKIRMDCEGCARKVKHVLFGVKGAKSVEVDLKQQKATVTGYVEPKKVLKAAQSTKK 290
Query: 174 RAEFW 178
+ E W
Sbjct: 291 KVELW 305
>BU760759 weakly similar to GP|14090380|dbj P0037C04.27 {Oryza sativa
(japonica cultivar-group)}, partial (17%)
Length = 429
Score = 50.4 bits (119), Expect = 4e-07
Identities = 21/57 (36%), Positives = 35/57 (60%)
Frame = +3
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISK 171
Q V++V IHC GC KVK+ L K++GV S +D + +V V G + P +++ + +
Sbjct: 75 QSCVLKVNIHCDGCEQKVKKLLQKIDGVYSVRVDADEGKVVVAGDVDPAKLVKKLKR 245
>TC225702 UP|Q9ZRD8 (Q9ZRD8) GMFP5 (Fragment), partial (98%)
Length = 1431
Score = 50.4 bits (119), Expect = 4e-07
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Frame = +3
Query: 87 IKQRNLDQVEEENEPPKELQKTPT------DNVFQVVVMRVAIHCQGCAGKVKRHLSKME 140
I+Q++ EE+ +P + +K P D+ VV ++ +HC+GC K+KR E
Sbjct: 60 IRQKHHQMGEEKEQPKNDTEKKPEEVAPKKDDGPIPVVYKLDLHCEGCVKKIKRTCRHFE 239
Query: 141 GVTSFNIDVESKRVTVMGHISPVVVLESISK 171
GV + D+ S +VTV G + + + I++
Sbjct: 240 GVETVKADLSSNKVTVTGKMDAEKLRDKIAE 332
Score = 43.5 bits (101), Expect = 5e-05
Identities = 25/90 (27%), Positives = 47/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 86 KIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSF 145
K ++ + + E + P+E K T VV+++ +HC GC K++R + + +GV
Sbjct: 396 KPPEKKAEDKKPEEKKPEEKPKEST------VVLKIKLHCDGCIAKIRRIILRFKGVQLV 557
Query: 146 NIDVESKRVTVMGHISPVVVLESIS-KVKR 174
++D VTV G + +L ++ K+KR
Sbjct: 558 SLDGSKDLVTVKGTMDVKEMLPYLNEKLKR 647
>BM307907
Length = 431
Score = 50.1 bits (118), Expect = 6e-07
Identities = 20/55 (36%), Positives = 36/55 (65%)
Frame = +2
Query: 117 VVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISK 171
VV++V +HC GCA K+ +HL +GV + D ++ +VTV G + P V +++++
Sbjct: 86 VVLKVEMHCDGCASKIIKHLRCFQGVETVKADSDAGKVTVTGKVDPTKVRDNLAE 250
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,086,045
Number of Sequences: 63676
Number of extensions: 77213
Number of successful extensions: 484
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of query: 180
length of database: 12,639,632
effective HSP length: 91
effective length of query: 89
effective length of database: 6,845,116
effective search space: 609215324
effective search space used: 609215324
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0314.12