BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0312.5
(204 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-li... 35 0.023
TC209303 33 0.068
CA853080 weakly similar to GP|9759160|dbj| contains similarity t... 32 0.15
TC234187 weakly similar to UP|MFP1_LYCES (P93203) MAR binding fi... 31 0.34
TC220991 weakly similar to GB|AAM16218.1|20334714|AY093957 At2g4... 30 0.58
TC207923 homologue to UP|Q9M0A0 (Q9M0A0) Signal recognition part... 30 0.99
TC227725 29 1.3
TC219880 28 2.2
TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, part... 28 2.2
TC210581 28 2.2
AW621060 similar to GP|8131846|gb| whitefly-induced gp91-phox {L... 28 2.2
BE660120 similar to GP|3860319|emb nucleolar protein {Cicer arie... 28 2.2
TC226629 homologue to UP|Q93XA3 (Q93XA3) Homeodomain leucine zip... 28 2.9
TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere au... 28 2.9
TC211455 27 4.9
TC211474 similar to GB|AAC33952.1|3513736|F8M12 F8M12.7 {Arabido... 27 4.9
TC227863 27 6.4
TC214392 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {A... 27 6.4
TC228567 27 6.4
TC216626 similar to UP|VIL2_ARATH (O81644) Villin 2, partial (36%) 27 6.4
>TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein,
partial (18%)
Length = 520
Score = 35.0 bits (79), Expect = 0.023
Identities = 30/101 (29%), Positives = 47/101 (45%)
Frame = +1
Query: 36 SNVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLK 95
+NV + L+ +D EI L++ M+LL + +EK A L E + + FEN
Sbjct: 187 TNVTPAEVGEQFLKNEDPEIA-LESLMELLIEKGRNHEKNKAALTIECFESAESFENEG* 363
Query: 96 TKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISV 136
++ +V N K L E+S L +ESS +SV
Sbjct: 364 LRNARLV*KNRMKKD*KP*LYECDHEHSILRIESSV*SLSV 486
>TC209303
Length = 709
Score = 33.5 bits (75), Expect = 0.068
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +3
Query: 48 LEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLKTKDEEIVNLNTE 107
+ E D +I +LKA +SN +T +K A+L SEL + NS+ T EI
Sbjct: 276 IREIDDQIRQLKAKRNRISNGLETMKKTKAELTSELTNV----ANSISTIGHEI----KH 431
Query: 108 AVQMKSSLESLQA 120
+ KS LE +A
Sbjct: 432 GLSQKSKLELKKA 470
>CA853080 weakly similar to GP|9759160|dbj| contains similarity to myosin
heavy chain~gene_id:MEE6.21 {Arabidopsis thaliana},
partial (10%)
Length = 583
Score = 32.3 bits (72), Expect = 0.15
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Frame = +1
Query: 44 NAKQLEEKDKEITKL------------KATMKLLSNSNKTNEKKAADLASELNKMKKDFE 91
NAK E +E +L KATMK L+ +++ +K L +++K+K++ E
Sbjct: 166 NAKTAERLQEEFRRLSTQMTTTFDANEKATMKALTEASEVRAQKML-LEEKVHKVKEEVE 342
Query: 92 NSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAKEQI 151
++ + ++ L+ + MK ++ + E S + + K H E E+I
Sbjct: 343 STKAGYEVKLNQLSNQIDTMKVQIQQMLLEIEDKSKQLQNQK----KHQEQVIRDFSEEI 510
Query: 152 SFLNPE 157
+ L E
Sbjct: 511 ALLKAE 528
>TC234187 weakly similar to UP|MFP1_LYCES (P93203) MAR binding filament-like
protein 1, partial (6%)
Length = 595
Score = 31.2 bits (69), Expect = 0.34
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +2
Query: 46 KQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLKTKDEEIVNLN 105
+ L + E +L+ + L + K E + + L+SEL ++ + + +L E L
Sbjct: 293 ENLAKSRNESAELENLLTLSNKLCKELELEVSKLSSELTEVNESLQRNLDDAKHEAEMLA 472
Query: 106 TEAVQMKSSLESLQAEYSKLSVE 128
+E K L+ QAE +S E
Sbjct: 473 SELTTAKEHLKEAQAELQGVSKE 541
>TC220991 weakly similar to GB|AAM16218.1|20334714|AY093957
At2g41900/T6D20.20 {Arabidopsis thaliana;} , partial
(14%)
Length = 681
Score = 30.4 bits (67), Expect = 0.58
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Frame = -2
Query: 111 MKSSLESLQAEYSKLSVESSSLKIS-------VLDHLEAGFAKAKEQISFLNP----ELA 159
+K S+ L+A SKL ESS L +S + G K KE + L+ +LA
Sbjct: 443 LKPSISLLEASSSKLEKESSVLTVSDFISISLAVTFTPKGKTKLKEILISLDHLPCLQLA 264
Query: 160 INFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNNKE 198
I GSD + + + + + EEE++EE ++
Sbjct: 263 ITDGGSDDHDV*KPKESATNRNVK*EEERSEESKNRKQQ 147
>TC207923 homologue to UP|Q9M0A0 (Q9M0A0) Signal recognition particle
receptor-like protein (AT4g30600/F17I23_60), partial
(60%)
Length = 1569
Score = 29.6 bits (65), Expect = 0.99
Identities = 11/29 (37%), Positives = 22/29 (74%)
Frame = +2
Query: 175 KLVSPNSAEEEEEKNEEDNGNNKEGEGEN 203
++VS S +EEE+++EED G N++ + ++
Sbjct: 347 EIVSSESEQEEEDEDEEDAGKNRKPDAKS 433
>TC227725
Length = 1536
Score = 29.3 bits (64), Expect = 1.3
Identities = 13/49 (26%), Positives = 27/49 (54%)
Frame = +2
Query: 44 NAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELNKMKKDFEN 92
N + L +K++E+T +K ++ + E K++DLA + +K +N
Sbjct: 1241 NLESLAQKEQEVTDIKTRIEEIREHLSELELKSSDLAKNILSIKSKVDN 1387
>TC219880
Length = 738
Score = 28.5 bits (62), Expect = 2.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 79 LASELNKMKKDFENSLKTKDEEIVNLN----TEAVQMKSSLESLQAEYSKLSVES 129
L +EL ++KKD+ LK KD+ I L+ + V ++SL +A +L S
Sbjct: 14 LEAELERVKKDYSLQLKQKDDVIRELSPKGGKKVVATRASLRPKEANTGELKSPS 178
>TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, partial (3%)
Length = 1311
Score = 28.5 bits (62), Expect = 2.2
Identities = 23/93 (24%), Positives = 43/93 (45%), Gaps = 5/93 (5%)
Frame = +3
Query: 46 KQLEEKDKEITKLKATMKLLSNSNKTNEKKAADL-----ASELNKMKKDFENSLKTKDEE 100
+ LE+K+KE+ KLK L + K+A L S+L ++ + + LK +
Sbjct: 498 QMLEDKNKEVEKLKDL--CLKQREEIKSLKSAILFPDVMNSQLQELLEKQGSELKQAKQV 671
Query: 101 IVNLNTEAVQMKSSLESLQAEYSKLSVESSSLK 133
I L + + L+SL + +++ + S K
Sbjct: 672 IPALQQQVSSLTGQLQSLAEDLAEVKADKYSAK 770
>TC210581
Length = 1073
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +2
Query: 70 KTNEKKAADLASELNKMKKDFENSLKTKDEEIVNLN 105
KT ++ L +E+ KM+KD LK KD+ I L+
Sbjct: 257 KTLQRTVKTLEAEIEKMRKDHSLQLKQKDDLIRELS 364
>AW621060 similar to GP|8131846|gb| whitefly-induced gp91-phox {Lycopersicon
esculentum}, partial (14%)
Length = 436
Score = 28.5 bits (62), Expect = 2.2
Identities = 18/48 (37%), Positives = 26/48 (53%)
Frame = +1
Query: 37 NVFDGTDNAKQLEEKDKEITKLKATMKLLSNSNKTNEKKAADLASELN 84
++ D + + EE+ KEI L AT LSN K E+ AA + EL+
Sbjct: 217 DMVDKDADGRITEEEIKEIICLSATANKLSNIQKQAEEYAALIMEELD 360
>BE660120 similar to GP|3860319|emb nucleolar protein {Cicer arietinum},
partial (38%)
Length = 720
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/111 (24%), Positives = 48/111 (42%)
Frame = +2
Query: 85 KMKKDFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGF 144
K+++ E L D+ + V MKS++ES++ EY+ + E+ +E
Sbjct: 404 KLREQVEERLDFYDKGVAPRKNIDV-MKSAIESVETEYTAMETEAP---------VEVSG 553
Query: 145 AKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGN 195
KAK++ + D +G + + +E+EEEK E GN
Sbjct: 554 KKAKKKKHKAXVTDDGDNMAXDKITETTNGDALEDHKSEKEEEK-EGKRGN 703
>TC226629 homologue to UP|Q93XA3 (Q93XA3) Homeodomain leucine zipper protein
HDZ3 (Fragment), partial (96%)
Length = 975
Score = 28.1 bits (61), Expect = 2.9
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 9/173 (5%)
Frame = +3
Query: 38 VFDGTDNAKQLEEKDKEITKLKATM--KLLSNSNKTNEKKAADLASELNKMKKD----FE 91
++D KQ EK ++ + + K NK ++ LA +L + F+
Sbjct: 48 LYDEEYYEKQSPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQ 227
Query: 92 NSL---KTKDEEIVNLNTEAVQMKSSLESLQAEYSKLSVESSSLKISVLDHLEAGFAKAK 148
N KTK L + +KSS ++L + Y + E+ LK V+ E +AK
Sbjct: 228 NRRARWKTKQ-----LERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAK 392
Query: 149 EQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEEDNGNNKEGEG 201
E PE + K DP VD + S E+ + G+ EG
Sbjct: 393 EV-----PEETLCDKKVDPLP--VDEDMAPIFSTRVEDHLSSGSVGSAVVDEG 530
>TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (5%)
Length = 710
Score = 28.1 bits (61), Expect = 2.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 176 LVSPNSAEEEEEKNEEDNGNNKEGE 200
L P EEEEE+ EE+N +E E
Sbjct: 412 LAEPEEEEEEEEEEEEENEEEEEEE 486
>TC211455
Length = 626
Score = 27.3 bits (59), Expect = 4.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 89 DFENSLKTKDEEIVNLNTEAVQMKSSLESLQAEYS 123
DF+N++ + +V T M S LESL A+YS
Sbjct: 219 DFDNNIASPFNVLVRKKTNISLMASDLESLIAKYS 323
>TC211474 similar to GB|AAC33952.1|3513736|F8M12 F8M12.7 {Arabidopsis
thaliana;} , partial (6%)
Length = 795
Score = 27.3 bits (59), Expect = 4.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 24 EITAISKMIDLESNVFDGTDNAKQLEEKDKEITK 57
E +++ + D SNV +G +N+++ EEK I K
Sbjct: 249 EKVSVTTITDKSSNVSEGGENSQKKEEKSNVIAK 350
>TC227863
Length = 1671
Score = 26.9 bits (58), Expect = 6.4
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
Frame = +3
Query: 167 PYARIVDG--KLVSPNSAEEEEEKNEEDNGNNKEGEGEN 203
PY+ +G SPNSA + KN E+ N +G+N
Sbjct: 939 PYSTYFEGCHSSASPNSAFSQLRKNSENESLNHSVDGQN 1055
>TC214392 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {Arabidopsis
thaliana;} , partial (67%)
Length = 1330
Score = 26.9 bits (58), Expect = 6.4
Identities = 28/124 (22%), Positives = 56/124 (44%), Gaps = 1/124 (0%)
Frame = +2
Query: 73 EKKAADLASELNKMKKDFENSLKTKDEEIVNLNTEAV-QMKSSLESLQAEYSKLSVESSS 131
E + L +E ++++ +L +I LN E V Q+KS L ++ K+ E
Sbjct: 446 EAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDE--- 616
Query: 132 LKISVLDHLEAGFAKAKEQISFLNPELAINFKGSDPYARIVDGKLVSPNSAEEEEEKNEE 191
L+HL E +L+ +LA +++DG +V + +++++ +
Sbjct: 617 -----LEHLLDDDEDMAEM--YLSEKLAEQ--------QVLDGDVVVVDDDDDDDDTSSA 751
Query: 192 DNGN 195
DNG+
Sbjct: 752 DNGD 763
>TC228567
Length = 1531
Score = 26.9 bits (58), Expect = 6.4
Identities = 58/236 (24%), Positives = 88/236 (36%), Gaps = 45/236 (19%)
Frame = +2
Query: 1 MQSLIPKKHISRIICQALITKGLEITAISKMIDLESNVFDGTDNAKQLEEK----DKEIT 56
M + +PKK + + +A K L A +++I+ + V + LE KEI
Sbjct: 608 MMTELPKK-LQKASQEADEAKSLAQAAQAELIEAQEEVEQAKAKSSTLESSLLAAQKEIE 784
Query: 57 KLKATMKLLSNSNKTNEKKAADLASELNKMKKDFENSLKT-------------KDEEIVN 103
K L ++ EK + ++ NK KD + + K EE N
Sbjct: 785 AAKVAEMLARDAITALEKSES---AKGNKNDKDSSSMVTLTLEEYHELSRRAYKAEEQAN 955
Query: 104 LNTEAVQMK---------SSLESLQAEYSKLSVESSSLKI-------------SVLDHLE 141
EA + SLE L+ +LSV SLKI +V L
Sbjct: 956 ARIEAATSQIQIARESELRSLEKLEELNEELSVRRESLKIATGNSEKANEGKLAVEHELR 1135
Query: 142 AGFAKAKEQISFLNPELAINFKGSDPYARIVD-----GKLVSPNS-AEEEEEKNEE 191
A+ K+Q +N + SDP D GK+ S N+ AE KN++
Sbjct: 1136TWRAEQKQQ----EKATELNEQTSDPTEPAHDSSSPKGKVPSNNTEAESASNKNKK 1291
>TC216626 similar to UP|VIL2_ARATH (O81644) Villin 2, partial (36%)
Length = 1777
Score = 26.9 bits (58), Expect = 6.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 64 LLSNSNKTNEKKAADLASELNKMKK 88
L +N K EKKA D+ +L+KMK+
Sbjct: 1673 LTNNIKKEREKKATDIKYKLDKMKE 1599
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.303 0.123 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,785,519
Number of Sequences: 63676
Number of extensions: 54004
Number of successful extensions: 397
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of query: 204
length of database: 12,639,632
effective HSP length: 93
effective length of query: 111
effective length of database: 6,717,764
effective search space: 745671804
effective search space used: 745671804
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0312.5