TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0310b.7
         (1046 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja...   148  1e-35
TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment...   118  2e-26
TC205614                                                               39  0.016
BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...    35  0.17
BU762066                                                               33  0.85
TC227277 homologue to UP|O48879 (O48879) Ribosomal protein L22 (...    32  1.1
TC225821 weakly similar to UP|Q94AG3 (Q94AG3) At1g72160/T9N14_8,...    32  1.9
TC226424 homologue to UP|PFPB_RICCO (Q41141) Pyrophosphate--fruc...    29  9.4

>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
           cultivar-group)}, partial (5%)
          Length = 617

 Score =  148 bits (373), Expect = 1e-35
 Identities = 77/124 (62%), Positives = 96/124 (77%)
 Frame = +2

Query: 624 IPGGRTAHSRFSIPLNINETLTCKVSKGSLKAKLLQQSSLIIWDEAPMLNIFCFEALDRT 683
           +P G TAHS FSIPL I +  TC +++GS ++KLL  + LIIWDE P++N FCFEALDRT
Sbjct: 110 LPRG*TAHSTFSIPLVIKDDSTCNINQGSARSKLLLHTKLIIWDETPVMNKFCFEALDRT 289

Query: 684 LKDIMSSENRANANKPFGGKVVVLGGDFKQILHVIQKGSRQDIVTATVNSSYLWENCKVL 743
           L+DIM+S+N+ NA KPFGGK VVLGGDF+QIL VI+KGSRQDIV + +N+S      KVL
Sbjct: 290 LQDIMASQNKDNATKPFGGK-VVLGGDFRQILPVIRKGSRQDIVGSAINASK-----KVL 451

Query: 744 SLTK 747
            L K
Sbjct: 452 KLKK 463



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
 Frame = +1

Query: 731 VNSSYLW--ENC--KVLSLTKNMRLLNTNGHQDNDDVKEFSE*ILKLGNGESTPNDDGKM 786
           V + Y W    C  + L   KNMRL  TN ++D DD++EF + IL + +G     D+G+ 
Sbjct: 400 VETRYCWFCHKCF*EGLEA*KNMRLGTTNNNEDRDDIREFVDWILMIRDGNRDEEDEGE- 576

Query: 787 LIDVPHDL 794
            ID+P +L
Sbjct: 577 -IDIPKNL 597


>TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment), partial
            (17%)
          Length = 1263

 Score =  118 bits (295), Expect = 2e-26
 Identities = 56/119 (47%), Positives = 79/119 (66%)
 Frame = +1

Query: 128  GLPHAHILLWLHGESKLTSPHDIDKKISAELPDPQLYPKLYDVVST*IMHGPCGKANPTC 187
            GLPH  +LL+LH +++  S  +ID  ISAE+P  +  P+LY +V   ++HGPCG      
Sbjct: 904  GLPHIQLLLFLHPDNQYPSSDEIDHIISAEIPSHEDDPELYTLVQNHMVHGPCGILQSHS 1083

Query: 188  ACMKNGKCTKYFPKKFQNSTTIDDNGYPHYRRRQSGIKVLKNGIELDSRNVVPYNPKLL 246
             CMK GKC++++PK F  +T +D NGY  YRRR  G  +LKN + +D+R +VPYN KLL
Sbjct: 1084 PCMKEGKCSRFYPKIFLPNTLLDLNGYLVYRRRNDGRTILKNSVIVDNRYLVPYNAKLL 1260


>TC205614 
          Length = 742

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +2

Query: 261 SNSIKYLFKYVNKGSD---RVTAEITTTAESSGNKRVVDEIKQYYDCRYLSPCEAVWITF 317
           SN   ++F Y++   +   R + ++   A    ++     +  Y DC+Y+SPCEA W  F
Sbjct: 497 SNLFSFIFHYISMVENHN*RTSLKLKDLASIEASQVSFPHM-YYLDCQYISPCEACWRIF 673

Query: 318 KFEIH 322
            F+I+
Sbjct: 674 SFQIY 688


>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 969 CLLRNDHQQESRAVFEPCWIIPS*TSIHSW 998
           CLL NDH+  +R +   CW I + TSI SW
Sbjct: 337 CLLCNDHK*ITRTIISKCWTISAYTSI*SW 426


>BU762066 
          Length = 413

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 514 CFSNYDLSRVEHYQNKFGVDEMTYNSEEMQDMHANLVSFLT 554
           CFSN+ L R  H + +    E   + E M  +HANLV  L+
Sbjct: 67  CFSNFTLHRNNHKRRRLNFHETQISWELMASIHANLVPNLS 189


>TC227277 homologue to UP|O48879 (O48879) Ribosomal protein L22 (Fragment),
           complete
          Length = 881

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 22/64 (34%), Positives = 27/64 (41%)
 Frame = +1

Query: 775 NGESTPNDDGKMLIDVPHDLFITDPSEPLLQLIQFVYPDMVSHLTDPTFYQERAILALTL 834
           NG  +PN       D P  L  T PS P             SHLT PT     +++A TL
Sbjct: 106 NGHPSPNSPPSSEFDAPPPLSTTKPSFP-------------SHLTLPTSIPTLSLVAFTL 246

Query: 835 ESVE 838
            S+E
Sbjct: 247 PSLE 258


>TC225821 weakly similar to UP|Q94AG3 (Q94AG3) At1g72160/T9N14_8, partial
           (84%)
          Length = 1480

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 11/64 (17%)
 Frame = +2

Query: 340 DVLDKKG--LYHNVFGVDLTYSEFPSKFVYNE---------KFIIWELRKQGYSIRRLTY 388
           D  DK+G  +Y+NVFG      EF  K +Y++         KFI W ++    S+R L +
Sbjct: 293 DGYDKEGHPVYYNVFG------EFEDKELYSKTFLDEEKRNKFIRWRIQSLEKSVRSLDF 454

Query: 389 IPPG 392
            P G
Sbjct: 455 SPNG 466


>TC226424 homologue to UP|PFPB_RICCO (Q41141) Pyrophosphate--fructose
            6-phosphate 1-phosphotransferase beta subunit  (PFP)
            (6-phosphofructokinase, pyrophosphate-dependent)
            (Pyrophosphate-dependent 6-phosphofructose-1-kinase)
            (PPi-PFK) , partial (84%)
          Length = 1648

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
 Frame = +2

Query: 574  YFLLCLRLWRNEKNLHLEDFISWPTSNW*NCIECRLK---WNC---INGRQNDTF 622
            Y LLC+ LW        ED+I+     W*    CR     WNC   I+GR  +T+
Sbjct: 1058 YLLLCIGLWCCSPPSKWEDWIN--IIGW*FMCSCRRMDCWWNCTHFIDGRGEETW 1216


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.333    0.145    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,599,035
Number of Sequences: 63676
Number of extensions: 783802
Number of successful extensions: 5543
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5542
length of query: 1046
length of database: 12,639,632
effective HSP length: 107
effective length of query: 939
effective length of database: 5,826,300
effective search space: 5470895700
effective search space used: 5470895700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 64 (29.3 bits)