BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0310b.12
(1485 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 403 e-112
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 402 e-112
TC233180 similar to UP|Q944K0 (Q944K0) At1g18030/T10F20_3, parti... 248 2e-65
CO981879 124 2e-53
BM307983 205 1e-52
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 205 1e-52
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 175 1e-43
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 175 1e-43
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 162 1e-39
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 161 2e-39
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 160 4e-39
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 154 3e-37
CO983154 146 8e-35
BI427153 140 5e-33
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 137 3e-32
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 135 2e-31
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 128 2e-31
BU764568 107 5e-30
CO981347 84 2e-29
BU548243 126 8e-29
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 403 bits (1035), Expect = e-112
Identities = 205/520 (39%), Positives = 324/520 (61%)
Frame = +1
Query: 960 VQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCK 1019
V + F+S I+ P +V+E L D+ WI AM EE+ +N ++V +P +G K
Sbjct: 3169 VSNSCFVSKIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTK 3336
Query: 1020 WIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWEL 1079
WI+ K +G + R KARLVA+GYTQ G+D+DETFAPVA++ ++R++L +A ++L
Sbjct: 3337 WIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKL 3516
Query: 1080 QQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAM 1139
Q DVK+AFL+G L EEVY+E P G+ + + V +LKKALYGLKQ+PRAW+ R T +
Sbjct: 3517 YQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFL 3696
Query: 1140 VSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDL 1199
GY++ D TLF+K L + +YV+D++ G ++ +++ +FEM +
Sbjct: 3697 TQQGYRKGGIDKTLFVKQDAE-NLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLV 3873
Query: 1200 GKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRV 1259
G+L YFLG++V + IF+SQ +Y +++K+ G P + K+ E V
Sbjct: 3874 GELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSV 4053
Query: 1260 HKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLL 1319
++ Y+ ++G L+YL+ +RPDI Y V V +++ +P+ HL V RIL+Y+ + G++
Sbjct: 4054 DQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIM 4233
Query: 1320 FKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRA 1379
+ + Y DAD+AGS DR+ST+G C +LG NL++W SKKQN V+ S+AEAE+ A
Sbjct: 4234 YCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIA 4413
Query: 1380 MAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKE 1439
+L+ MK +L + ++ + M L+CDN SAI+I+ NPVQH RTKHI+I H+I++
Sbjct: 4414 AGSSCSQLVWMKQMLKEYNVEQDV-MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRD 4590
Query: 1440 KLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGM 1479
++ +I+ ++V + Q+AD+ TK L +F +L KLG+
Sbjct: 4591 LVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710
Score = 186 bits (471), Expect = 9e-47
Identities = 139/535 (25%), Positives = 236/535 (43%), Gaps = 9/535 (1%)
Frame = +1
Query: 279 RCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRRANHTASDMENDGEVPPVPPAED 338
RC YC + GH K +C+ L+G + + S S+ H A +
Sbjct: 1507 RCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVSLV------------- 1647
Query: 339 VPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTENDWIIDFGATDHMT 398
SL A S + DW +D G + HMT
Sbjct: 1648 -----------------------------------VHTSLRA-SAKEDWYLDSGCSRHMT 1719
Query: 399 PHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHK 458
L + Y+T +GS+ +I G G + L +VL V L+ NL+SI +
Sbjct: 1720 GVKEFLLNIEPC-STSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQ 1896
Query: 459 LTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSSESWNTSQIW 518
L D V F S + + + ++ ++ +D Y +E+ T S ++
Sbjct: 1897 LC-DEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSS-KEDEVR 2070
Query: 519 LRHKRLGHPPFSILRTMF--------PHLFSKVSVESFHCDVCQFSKHHRSTFLPSNNKC 570
+ H+R GH ++ + P+L K+ E C CQ K + + ++
Sbjct: 2071 IWHQRFGHLHLRGMKKIIDKGAVRGIPNL--KIE-EGRICGECQIGKQVKMSHQKLQHQT 2241
Query: 571 -AQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMI 629
++ +L+H D+ GP + ++ G ++ +DD +R TWV +++KSE F++F +
Sbjct: 2242 TSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRL 2421
Query: 630 RTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEIT 689
+ + IKR+RSD+G+E N F+EF T G+ HE + PQQNG+ ERKNR L E
Sbjct: 2422 QREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAA 2601
Query: 690 RALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVF 749
R +L +P W EA+ TA Y+ NR+ R + + + PSV +F
Sbjct: 2602 RVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVK-----HFHIF 2766
Query: 750 GCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQE 804
G ++ R K+DP++ IF+GY+++ + Y+ ++ +R V S++V +
Sbjct: 2767 GSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 2931
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 402 bits (1034), Expect = e-112
Identities = 205/520 (39%), Positives = 323/520 (61%)
Frame = +1
Query: 960 VQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCK 1019
V + F+S I+ P +V+E L D+ WI AM EE+ +N ++V +P +G K
Sbjct: 3172 VSNSCFVSKIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTK 3339
Query: 1020 WIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWEL 1079
WI+ K +G + R KARLVA+GYTQ G+D+DETFAPVA++ ++R++L +A ++L
Sbjct: 3340 WIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKL 3519
Query: 1080 QQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAM 1139
Q DVK+AFL+G L EE Y+E P G+ + + V +LKKALYGLKQ+PRAW+ R T +
Sbjct: 3520 YQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFL 3699
Query: 1140 VSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDL 1199
GY++ D TLF+K L + +YV+D++ G ++ +++ +FEM +
Sbjct: 3700 TQQGYRKGGIDKTLFVKQDAE-NLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLV 3876
Query: 1200 GKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRV 1259
G+L YFLG++V + IF+SQ KY +++K+ G P + K+ E V
Sbjct: 3877 GELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSV 4056
Query: 1260 HKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLL 1319
++ Y+ ++G L+YL+ +RPDI Y V V +++ +P+ HL V RIL+Y+ + G++
Sbjct: 4057 DQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIM 4236
Query: 1320 FKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRA 1379
+ + Y DAD+AGS DR+ST+G C +LG NL++W SKKQN V+ S+AEAE+ A
Sbjct: 4237 YCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIA 4416
Query: 1380 MAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKE 1439
+L+ MK +L + ++ + M L+CDN SAI+I+ NPVQH RTKHI+I H+I++
Sbjct: 4417 AGSSCSQLVWMKQMLKEYNVEQDV-MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRD 4593
Query: 1440 KLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGM 1479
++ +I+ ++V + Q+AD+ TK L +F +L KLG+
Sbjct: 4594 LVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGI 4713
Score = 185 bits (470), Expect = 1e-46
Identities = 139/535 (25%), Positives = 237/535 (43%), Gaps = 9/535 (1%)
Frame = +1
Query: 279 RCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRRANHTASDMENDGEVPPVPPAED 338
RC YC + GH K +C+ L+G H + + G P
Sbjct: 1510 RCHYCGKYGHIKPFCYHLHGHP------------------HHGTQSSSSGRKMMWVPKHK 1635
Query: 339 VPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTENDWIIDFGATDHMT 398
+ SL SL A S + DW +D G + HMT
Sbjct: 1636 IVSLV------------------------------VHTSLRA-SAKEDWYLDSGCSRHMT 1722
Query: 399 PHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHK 458
L + Y+T +GS+ +ITG G + L +VL V L+ NL+SI +
Sbjct: 1723 GVKEFLVNIEPC-STSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQ 1899
Query: 459 LTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSSESWNTSQIW 518
L D V F S + + + ++ ++ +D Y +E+ T S ++
Sbjct: 1900 LC-DEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFS-KEDEVK 2073
Query: 519 LRHKRLGHPPFSILRTMF--------PHLFSKVSVESFHCDVCQFSKHHRSTFLPSNNKC 570
+ H+R GH ++ + P+L K+ E C CQ K + + ++
Sbjct: 2074 IWHQRFGHLHLRGMKKIIDKGAVRGIPNL--KIE-EGRICGECQIGKQVKMSHQKLQHQT 2244
Query: 571 -AQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMI 629
++ +L+H D+ GP + ++ G ++ +DD +R TWV +++KS+ F++F +
Sbjct: 2245 TSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRL 2424
Query: 630 RTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEIT 689
+ + IKR+RSD+G+E N F+EF T G+ HE + PQQNG+ ERKNR L E
Sbjct: 2425 QREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAA 2604
Query: 690 RALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVF 749
R +L +P W EA+ TA Y+ NR+ R + + + P+V +F
Sbjct: 2605 RVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVK-----HFHIF 2769
Query: 750 GCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQE 804
G ++ R K+DP++ IF+GY+++ + Y+ ++ +R V S++V +
Sbjct: 2770 GSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 2934
>TC233180 similar to UP|Q944K0 (Q944K0) At1g18030/T10F20_3, partial (11%)
Length = 916
Score = 248 bits (632), Expect = 2e-65
Identities = 132/203 (65%), Positives = 147/203 (72%), Gaps = 10/203 (4%)
Frame = +2
Query: 339 VPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTENDWIIDFGATDHMT 398
V L + LERLR FMD SK S SCSLTM GKSS+FLS NA TEN IID G TDHMT
Sbjct: 308 VNHLPPSSLERLRAFMDPFSKTSSSCSLTMAGKSSSFLSFNASGTENI*IIDSGVTDHMT 487
Query: 399 PHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHK 458
PH S+ SSY+ G +I VANGS I GCGNI L SL L VL+VPKLSNNLLSIHK
Sbjct: 488 PHSSYFSSYTFLIGNQHIIVANGSHIPIIGCGNIQLQSSLHLNNVLYVPKLSNNLLSIHK 667
Query: 459 LTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESK-C---------HQTS 508
+T DLNC VTFFHSH VF DLA G++IGIAKE GLY LQHE++K C HQTS
Sbjct: 668 IT*DLNCVVTFFHSHCVF*DLAMGRMIGIAKE*GGLYYLQHEDNKECTR*KALTSNHQTS 847
Query: 509 SESWNTSQIWLRHKRLGHPPFSI 531
SE W++SQIWL+HK LGHPPFS+
Sbjct: 848 SEPWSSSQIWLQHKCLGHPPFSV 916
>CO981879
Length = 576
Score = 124 bits (312), Expect(2) = 2e-53
Identities = 57/96 (59%), Positives = 71/96 (73%)
Frame = -1
Query: 621 LFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAER 680
+F FF MI+TQF IK RSDNG+E NK+ S+ +NG++H+ +CVD PQQNGVAER
Sbjct: 570 IFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAER 391
Query: 681 KNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINR 716
KNRHL E+ RALLFQ PK+ WGEA+LT YL N+
Sbjct: 390 KNRHLXEVARALLFQNKAPKYXWGEAILTGTYLKNK 283
Score = 105 bits (261), Expect(2) = 2e-53
Identities = 43/94 (45%), Positives = 70/94 (73%)
Frame = -2
Query: 716 RLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFI 775
R+PS++L+ +P+ V TS FP+ + L ++FGC+ FVH+H ++GKL+PRA KC+F+
Sbjct: 284 RMPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFV 105
Query: 776 GYASDKKGYKCYHPPSRRVYISMDVTFQESESFY 809
GYA ++KGYKC+ P S++ ++++DVTF E F+
Sbjct: 104 GYAPNQKGYKCFDPTSKKTFVTIDVTFFEKTPFF 3
>BM307983
Length = 406
Score = 205 bits (522), Expect = 1e-52
Identities = 101/135 (74%), Positives = 111/135 (81%), Gaps = 1/135 (0%)
Frame = +2
Query: 1016 VGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAK-MNTVRIILSLAAH 1074
VGC+WIYTVKY +D TLDRYKARLVAKGY QTYGIDY+ETFA K + + A
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 1075 FDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGR 1134
F WE+ QFDVKNAFLHG LEEEVYMEIPPGY ++G NKVC+LKKALYGLKQSPRAWFGR
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 1135 FTNAMVSLGYKQSQG 1149
FT AM+SLGYKQSQG
Sbjct: 362 FTQAMLSLGYKQSQG 406
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 205 bits (522), Expect = 1e-52
Identities = 117/287 (40%), Positives = 169/287 (58%), Gaps = 1/287 (0%)
Frame = +2
Query: 414 HYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSH 473
++IT+A+GS+ TG G++ + SL L V+ + N+ S+ +LTR NC+VTF +
Sbjct: 14 YFITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANS 193
Query: 474 GVFQDLATGQIIGIAKEQDGLYCLQHEES-KCHQTSSESWNTSQIWLRHKRLGHPPFSIL 532
V Q+ TG IG+ E GLY L+ S C +S L H+RLGHP S L
Sbjct: 194 FVIQECGTGWTIGVGIESHGLYYLKPNLSWVCSAVTSPK-------LLHERLGHPHLSKL 352
Query: 533 RTMFPHLFSKVSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSG 592
+ M P L ++ C+ CQ KH RS+ ++ PF ++H D+WGP+ +S++S
Sbjct: 353 KIMVPSL---EKIKDLFCESCQLGKHVRSSXRHVESRVDSPFLVIHXDIWGPNRVSSMS- 520
Query: 593 AKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKN 652
++FVTFID+ ++ T VFLMK++SE+ F + I+TQFGK IK LRSDN KE +
Sbjct: 521 YRYFVTFIDEFSQCTRVFLMKERSEILS-FLTSVNKIKTQFGKTIKILRSDNAKEYFSSV 697
Query: 653 FSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVP 699
S F + G++H+ +C PQQN +AERKNRHL+E R LL N P
Sbjct: 698 ISPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 175 bits (444), Expect = 1e-43
Identities = 81/133 (60%), Positives = 100/133 (74%)
Frame = -2
Query: 1007 VEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR 1066
V P K VGC+W+YTVK G +DR KARLVAKGYTQ YGIDY +TF+PVAK+ TVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1067 IILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQ 1126
+ L++AA W L Q D+KNAFLHGDLEE++YME PPG+ VCKL ++LYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1127 SPRAWFGRFTNAM 1139
SPRAWFG+F++ +
Sbjct: 46 SPRAWFGKFSHVV 8
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 175 bits (444), Expect = 1e-43
Identities = 86/155 (55%), Positives = 116/155 (74%)
Frame = +2
Query: 1331 YTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRM 1390
Y DAD+AG +DRRST+GYC+F+GGNLV+W+SKKQ VVARSSAEAE+R+MA CEL+ +
Sbjct: 26 YCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCELMWI 205
Query: 1391 KIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQY 1450
K L +L+ E M+L+CDN++A+ IA NPV H+RTKHIEID HFI+EKL S I T++
Sbjct: 206 KQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIVTEF 385
Query: 1451 VPSGLQLADVLTKGLPLERFRELTCKLGMIDIHSP 1485
+ S Q D+LTK L + + + KLG D+++P
Sbjct: 386 IGSNDQPVDILTKSLRGPKIQIVCSKLGAYDLYAP 490
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 162 bits (409), Expect = 1e-39
Identities = 90/180 (50%), Positives = 117/180 (65%), Gaps = 1/180 (0%)
Frame = +1
Query: 1030 GTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFL 1089
GT+D++KARLVAK YTQ YG DY TF+PVAKM V ++ S+A W L D KNAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 1090 HGDLEEEVYMEIPPGY-DPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQ 1148
HG LEEEVYME P G+ N VC+L ++ YGLKQSPRAW F ++ Y +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSHE 381
Query: 1149 GDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGM 1208
DH++F H+ G + L+VYV+D+ I G+D+ L+ L QF+ KDLGKL+YFLG+
Sbjct: 382 ADHSVFYCHSPQGCI-YLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 161 bits (408), Expect = 2e-39
Identities = 82/222 (36%), Positives = 141/222 (62%), Gaps = 3/222 (1%)
Frame = +1
Query: 1259 VHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGL 1318
V +++RL+G L YL ++RP+I + VS++S+FM P+ H+QA R+L+ +K + G G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1319 LFK---KSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEA 1375
LF KS + + YTD+D+ +ST GY V SKKQ+V+A S+ EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1376 EFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRH 1435
E+ A + G C+ + M +L++LK++ P+ L DNKSAI++A +P H R+KHIE+ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1436 FIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKL 1477
+I+++++ ++ +Y + QLAD++TK + + RF+++ +L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 160 bits (405), Expect = 4e-39
Identities = 75/134 (55%), Positives = 99/134 (72%)
Frame = +3
Query: 969 IDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRS 1028
+ S+ VP++++E L W QAM +EM AL+ NGT ++V P K TVGC+W+YTVK
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 1029 DGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAF 1088
+G +DR KARLVAKGYTQ YGI+Y +TF+PV + TVR+ L++AA W L Q D+KNAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 1089 LHGDLEEEVYMEIP 1102
LHGDLEE++YME P
Sbjct: 363 LHGDLEEDIYMEQP 404
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 154 bits (389), Expect = 3e-37
Identities = 72/151 (47%), Positives = 107/151 (70%)
Frame = -3
Query: 990 AMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYG 1049
AM EE++ ++N K+VEKP + +G KW++ K G + R KARLVAKGY Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 1050 IDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTS 1109
IDY+ET+APVA++ +R++L+ + +++L Q DVK+AFL+G ++EEVY+E PPG++
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 1110 GRNKVCKLKKALYGLKQSPRAWFGRFTNAMV 1140
V KL+KALYGLKQ+PRAW+ R +N ++
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLL 6
>CO983154
Length = 568
Score = 146 bits (368), Expect = 8e-35
Identities = 82/190 (43%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Frame = +3
Query: 672 PQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVM 731
PQQNG+AERKNRHLLE R+L+ +NVP +WG+AVLT+ +LINR+PS L N P ++
Sbjct: 9 PQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHSLV 188
Query: 732 TSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPS 791
FP P+ + +VFGC+ FVH KL R++KC+F+GY+ +KGYKCY P
Sbjct: 189 ---FPHDPL-FHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTM 356
Query: 792 RRVYISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPL-MPSSIPITEDSDD 850
RR Y+S DVTF E F+ SP + LQE L +PS P+ +
Sbjct: 357 RRYYMSADVTFFEDTPFF--------------SPSVDHSSSLQEVLPIPSPYPLXNSGQN 494
Query: 851 DDNGPEQVPN 860
P PN
Sbjct: 495 VSIVPSSSPN 524
>BI427153
Length = 422
Score = 140 bits (352), Expect = 5e-33
Identities = 70/144 (48%), Positives = 93/144 (63%)
Frame = +1
Query: 664 HELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLS 723
H+ TC PQQNG+AERKN HLLE R+L+ NVP +WG+AVLTA +LINR+PS L
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 724 NVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKG 783
N P ++ FP+ + + +VFGC+ FVH KL R++KC+F+GY+ +KG
Sbjct: 181 NQIPHSIV---FPN-DLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKG 348
Query: 784 YKCYHPPSRRVYISMDVTFQESES 807
Y CY P RR Y+S +VTF E S
Sbjct: 349 YTCYFPNMRRYYMSANVTFFEDTS 420
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 137 bits (346), Expect = 3e-32
Identities = 68/130 (52%), Positives = 94/130 (72%), Gaps = 3/130 (2%)
Frame = -2
Query: 1359 TWR---SKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAI 1415
TW +K + ARSSA+AE+RAMAQGVCE+L +K IL++L++ PM+L+CDNK+AI
Sbjct: 444 TWXXGGTKNKMXXARSSAKAEYRAMAQGVCEIL*LKRILEELQLPMTLPMKLYCDNKAAI 265
Query: 1416 SIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTC 1475
+I+ NPVQH RTKH+EIDR FIKEK+++ I ++P Q+AD+ TKGL F
Sbjct: 264 NISQNPVQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTKGLFRPNFEFFVS 85
Query: 1476 KLGMIDIHSP 1485
KL M+DI++P
Sbjct: 84 KLDMLDIYAP 55
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 135 bits (339), Expect = 2e-31
Identities = 68/135 (50%), Positives = 97/135 (71%)
Frame = -2
Query: 1119 KALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGN 1178
K+LYGLKQ+ R W+ + TN ++ GY QS D++LF T+ T LLVYV+D+I+AG+
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTL-TKGNTFTALLVYVDDIILAGD 244
Query: 1179 DELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCK 1238
E ++ L + F++K+LGKLKYFLG+EVA+S+ GI ISQRKY LDLLK++G LGCK
Sbjct: 243 SIDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCK 64
Query: 1239 PMGVPIEQNHKIGSS 1253
P P++ + K+ S+
Sbjct: 63 PASTPLDTSIKLHSA 19
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 128 bits (321), Expect(2) = 2e-31
Identities = 62/109 (56%), Positives = 82/109 (74%)
Frame = +2
Query: 1333 DADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKI 1392
DA++A S +DR ST GYC+ +G NLV W+S K NVVARSSAEAE++AM CEL+ +K
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 1393 ILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKL 1441
+L +LK M+L CDN++A+ IA NPV H+RTKHIEID HF++EK+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 27.7 bits (60), Expect(2) = 2e-31
Identities = 13/42 (30%), Positives = 24/42 (56%)
Frame = +3
Query: 1443 SSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHS 1484
S + ++V S QLA++ TK L R + + KLG ++++
Sbjct: 339 SKEVIIEFVSSNDQLANIFTKSLRGPRIQNICSKLGAFELYA 464
>BU764568
Length = 420
Score = 107 bits (267), Expect(2) = 5e-30
Identities = 49/85 (57%), Positives = 68/85 (79%)
Frame = +3
Query: 1346 TTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPM 1405
T+GYC+ +GGNL++W+SKKQ+VVA+SSAEAE+RAMA CEL+ +K +L +LK + + M
Sbjct: 165 TSGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQM 344
Query: 1406 RLFCDNKSAISIAHNPVQHDRTKHI 1430
L CDN++A+ IA NP+ H RTKHI
Sbjct: 345 TLICDNQAALHIASNPIFH*RTKHI 419
Score = 43.9 bits (102), Expect(2) = 5e-30
Identities = 23/61 (37%), Positives = 35/61 (56%)
Frame = +1
Query: 1289 SQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTG 1348
SQF++ P + H AV IL+ K++PG+GL+++ + Y+DAD GS DR
Sbjct: 1 SQFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDRHQDIV 180
Query: 1349 Y 1349
Y
Sbjct: 181 Y 183
>CO981347
Length = 624
Score = 84.0 bits (206), Expect(3) = 2e-29
Identities = 46/111 (41%), Positives = 61/111 (54%)
Frame = +2
Query: 618 VFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGV 677
+F F +I Q G +K LR+DNG E V + F+EF K G+ P QNG+
Sbjct: 104 IF*KFRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGL 283
Query: 678 AERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPV 728
AER N +LE R +L +PK +WGEA T +YLINR PS L +P+
Sbjct: 284 AERMNMTILERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTPM 436
Score = 45.8 bits (107), Expect(3) = 2e-29
Identities = 26/49 (53%), Positives = 31/49 (63%)
Frame = +3
Query: 739 PIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCY 787
P SGL +VFG AF HV +GKLD RA+KC+FIGY K YK +
Sbjct: 459 PNYSGL--KVFGSLAFDHVK---QGKLDARAVKCVFIGYPKGVKRYKLW 590
Score = 39.7 bits (91), Expect(3) = 2e-29
Identities = 15/37 (40%), Positives = 26/37 (69%)
Frame = +3
Query: 584 PSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQ 620
PS + G+ +F+T IDD +R W++++K+KSE F+
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESFK 113
>BU548243
Length = 599
Score = 126 bits (316), Expect = 8e-29
Identities = 68/145 (46%), Positives = 96/145 (65%)
Frame = -1
Query: 1333 DADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKI 1392
DA +A + D RST G +FLG NL++W S+KQ V A+SS EAE+R++AQ EL ++
Sbjct: 587 DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408
Query: 1393 ILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVP 1452
+L +L+I + P+ + CDNKSA++IAHN V H RTKH+EID F+ EK+ S + ++P
Sbjct: 407 LLMELQIPFTPPV-ILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 1453 SGLQLADVLTKGLPLERFRELTCKL 1477
+ Q A +LTK L RF L KL
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKL 156
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,318,332
Number of Sequences: 63676
Number of extensions: 1014668
Number of successful extensions: 5843
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 5613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5748
length of query: 1485
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1376
effective length of database: 5,698,948
effective search space: 7841752448
effective search space used: 7841752448
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0310b.12