TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0307.15
         (326 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC228140                                                              261  3e-70
BM108113                                                              100  2e-24
TC211551 similar to UP|Q9FLD0 (Q9FLD0) Gb|AAD32815.2, partial (13%)    50  1e-06
TC205301 similar to UP|Q7QIP8 (Q7QIP8) AgCP3364 (Fragment), part...    32  0.51
TC214545 GB|AAA33978.1|169989|SOYIDH NADPH-specific isocitrate d...    31  0.66
TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pr...    30  1.5
TC210393 weakly similar to GB|AAF25189.1|6694227|AF187147 drebri...    28  4.3
TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%)       27  9.6
TC231490 similar to UP|HSF8_LYCPE (P41153) Heat shock factor pro...    27  9.6

>TC228140 
          Length = 1467

 Score =  261 bits (667), Expect = 3e-70
 Identities = 164/334 (49%), Positives = 210/334 (62%), Gaps = 9/334 (2%)
 Frame = +1

Query: 1   MSSEDNFSDGVVKPQPRPVLSDVTNLRAKRPFSSISADDGDSRFTKKKVQSKLGVQ-AQQ 59
           M S DNF DG+ K   RP L+DVTNL AKR FS +S D GD +FTKK    +LGV+   +
Sbjct: 340 MGSNDNFGDGIFKT--RPHLADVTNLPAKRSFSLVSGDGGDLQFTKK---IRLGVENLAK 504

Query: 60  GRSNK--------DKVVVSQQKGQNPCLELPFCGDDSLGNVSSQESNLQLPSGGLEEKNL 111
           G+S          +  V+ Q K ++  L LPF  DD+L +      N  L   G+EE+N 
Sbjct: 505 GKSQMQFGAHAYLNNEVLLQPKEKHTIL-LPF-SDDTLHSFQ----NPSLTVEGMEEQN- 663

Query: 112 LGGAVVSGPTEVPVAVLGEIGQGRPLNEGFIDRGIESGQRDVRAVDNLGSPKCGGRAVEL 171
                   P ++     G+ G G        DR +ESG +D+  V+NLGSPKCG  A ++
Sbjct: 664 --------PLDLENFKFGKEGDGIVAT----DRAVESGGKDICDVENLGSPKCG--AEQM 801

Query: 172 PTMSDSCDSRFPGLERCSVLQGNAGPTSAAAAADLLKSCTCSFCSKAAHIWSDLHYQDVK 231
           PT+S S DS F GL+ CS        +S   AADL KSCTCSFCSKA +IWSDLHYQD K
Sbjct: 802 PTISVSNDSNFLGLKPCS--------SSVTEAADL-KSCTCSFCSKAGYIWSDLHYQDAK 954

Query: 232 GRLSALKKSQKDASNAVQKLSEIKDSVMPDQQSSSESSKLELALMHQWKSLFDFMENTFA 291
           GRLSA+KKSQK+A   +QK S ++++VM DQ  S ES KLEL+L+HQWKSLF  M+N + 
Sbjct: 955 GRLSAIKKSQKEAKMIIQKFSGLENTVMHDQHRSEESLKLELSLVHQWKSLFLQMQNMYT 1134

Query: 292 EESRQLESSFETLKDLRDNCKNDLDSTDNTHFDN 325
           +ES QLE+SFETLK+LR+NCK DL+  DN+H  N
Sbjct: 1135QESSQLETSFETLKNLRENCKTDLELNDNSHHQN 1236


>BM108113 
          Length = 568

 Score =  100 bits (248), Expect(3) = 2e-24
 Identities = 49/82 (59%), Positives = 64/82 (77%)
 Frame = +3

Query: 228 QDVKGRLSALKKSQKDASNAVQKLSEIKDSVMPDQQSSSESSKLELALMHQWKSLFDFME 287
           +D KGRLSA+KKSQK+A   +QK S ++D++M DQ  S ES KLE +L+HQWKSLF  ++
Sbjct: 57  KDAKGRLSAIKKSQKEAKMIIQKFSGLEDTIMHDQHRSEESLKLEFSLVHQWKSLFLEIQ 236

Query: 288 NTFAEESRQLESSFETLKDLRD 309
           N + +ES QLESSFETLK LR+
Sbjct: 237 NMYTQESSQLESSFETLKILRE 302



 Score = 27.7 bits (60), Expect(3) = 2e-24
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 208 KSCTCSFCSK 217
           KSCTCSFCSK
Sbjct: 29  KSCTCSFCSK 58



 Score = 22.3 bits (46), Expect(3) = 2e-24
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 309 DNCKNDLDSTDNTHFDN 325
           + CK  L+  DN+H +N
Sbjct: 298 EKCKTGLELNDNSHCEN 348


>TC211551 similar to UP|Q9FLD0 (Q9FLD0) Gb|AAD32815.2, partial (13%)
          Length = 895

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 45/161 (27%), Positives = 73/161 (44%), Gaps = 13/161 (8%)
 Frame = +3

Query: 164 CGGRAVELPTMSDSC--DSRFPGLERCSVLQGNAGPTSAAAAADLLKSCTCSFCSKAAHI 221
           C  R   L   S S   +S+  G +R S   G+ G        DL  +   S  +  A  
Sbjct: 123 CNSRTASLLLSSSSSPSNSKIVGDKRGSSHAGH-GARKRVKMKDL-DAVVHSVAATVASQ 296

Query: 222 WSDLHYQDVKGRLSALKKSQKDASNAV---------QKLSEIKDSVMPDQQSSSESSKLE 272
           W +L  QD+KGRLSAL++S++   + +         ++    +D      + S+     +
Sbjct: 297 WLELLQQDIKGRLSALRRSRRKVRSVITTELPFLLSKEFGNNQDYDPCTVEMSAGLPTSK 476

Query: 273 LALMH--QWKSLFDFMENTFAEESRQLESSFETLKDLRDNC 311
           +A MH  +W SLFD M+   +EE +QLE     +K+ +  C
Sbjct: 477 IADMHRARWSSLFDHMDAALSEEEKQLECWLNQVKEKQLLC 599


>TC205301 similar to UP|Q7QIP8 (Q7QIP8) AgCP3364 (Fragment), partial (10%)
          Length = 1199

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 28/111 (25%), Positives = 41/111 (36%)
 Frame = -3

Query: 194 NAGPTSAAAAADLLKSCTCSFCSKAAHIWSDLHYQDVKGRLSALKKSQKDASNAVQKLSE 253
           +AGP+     A     C   FC     IWSD   Q++  R ++L     D   +    S 
Sbjct: 711 SAGPSQKLEQAPQQVQC---FCFSVQQIWSDQTPQELPQRETSLMHRSGDHHKSA---SL 550

Query: 254 IKDSVMPDQQSSSESSKLELALMHQWKSLFDFMENTFAEESRQLESSFETL 304
            ++S  PD  +  E     +   H   +L           S   ESS+ TL
Sbjct: 549 FQNSSFPDHTNHIELFGYHMLQFHVHNNLLILKVQLHLPTSLSQESSYNTL 397


>TC214545 GB|AAA33978.1|169989|SOYIDH NADPH-specific isocitrate dehydrogenase
            {Glycine max;} , complete
          Length = 1727

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
 Frame = -2

Query: 19   VLSDVTNLRAKRPFSSISAD-----DGDSRFTK---KKVQSKLGVQAQQGRSNKDKVVVS 70
            VL  VT+ R  R F+ +SA+     +  S+  K   +K+  KLGV   Q    KDK V +
Sbjct: 1690 VLIMVTH*RLGRMFNFLSAERHLQNNNKSKHAK*IQQKIHYKLGVGRDQ*EITKDKSVHN 1511

Query: 71   QQKGQ---NPCL 79
            Q  G+   NPC+
Sbjct: 1510 QYYGEETANPCI 1475


>TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
           (AtAGP4) (AT5g10430/F12B17_220), partial (50%)
          Length = 966

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 113 GGAVVSGPTEVPVAVLGEIGQGRPLNEG 140
           G A+  GP E P  VLGE+G G  + EG
Sbjct: 513 GSALPEGPGEGPGGVLGEVGLGVTVGEG 430


>TC210393 weakly similar to GB|AAF25189.1|6694227|AF187147 drebrin A {Mus
           musculus;} , partial (4%)
          Length = 784

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12  VKPQPRPVLSDVTNLRAKRPFSSISADDG-DSRFTKKKVQSKLGVQAQQ 59
           ++P PRPV +++  +  KR  +S     G   R TKKK+ S+  +Q Q+
Sbjct: 483 LRPTPRPVTANLAPVSHKRASTSRDQVQGIKERDTKKKIWSR**IQLQK 629


>TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%)
          Length = 1259

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/34 (41%), Positives = 17/34 (49%)
 Frame = +2

Query: 224 DLHYQDVKGRLSALKKSQKDASNAVQKLSEIKDS 257
           DL+YQ + G   AL  +Q       QK S  KDS
Sbjct: 539 DLYYQTITGLKHALSLTQPSQQKTQQKSSPTKDS 640


>TC231490 similar to UP|HSF8_LYCPE (P41153) Heat shock factor protein HSF8
           (Heat shock transcription factor 8) (HSTF 8) (Heat
           stress transcription factor), partial (32%)
          Length = 646

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/43 (37%), Positives = 19/43 (43%), Gaps = 1/43 (2%)
 Frame = -1

Query: 174 MSDSCDSRFPGLERCSVLQGNAG-PTSAAAAADLLKSCTCSFC 215
           ++ SC S F  L R S    +   PTS  A  D L  C C  C
Sbjct: 607 LTSSCMSTFLSLLRISTSSSSPNFPTSTQAPTDELCPCACCAC 479


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.311    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,331,398
Number of Sequences: 63676
Number of extensions: 173639
Number of successful extensions: 713
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of query: 326
length of database: 12,639,632
effective HSP length: 98
effective length of query: 228
effective length of database: 6,399,384
effective search space: 1459059552
effective search space used: 1459059552
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)