TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0306.5
         (165 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequen...    84  3e-17
TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L1...    69  1e-12
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part...    64  3e-11
TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part...    57  5e-09
TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana geno...    54  3e-08
TC227589                                                               52  1e-07
TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich p...    50  5e-07
TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (G...    48  2e-06
TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, pa...    46  7e-06
TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like prot...    45  2e-05
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein...    44  4e-05
TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), ...    43  6e-05
TC233976                                                               43  8e-05
TC206179 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part...    37  0.003
TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp...    36  0.007
AW203350                                                               33  0.047
TC232026                                                               33  0.062
TC224993 homologue to UP|Q9W3A9 (Q9W3A9) CG12660-PA, partial (15%)     33  0.062
TC227590 similar to UP|GRP2_NICSY (P27484) Glycine-rich protein ...    32  0.11
TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp...    32  0.11

>TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequence, partial
           (22%)
          Length = 742

 Score = 84.0 bits (206), Expect = 3e-17
 Identities = 53/164 (32%), Positives = 68/164 (41%), Gaps = 34/164 (20%)
 Frame = +2

Query: 12  GDKDVTCFCCGKFGQFANNCSVI----------GPRCFKCNREGHLAVNCKTLQGGPSDS 61
           G     C+ CG+FG  A +C+            G  CF C   GHLA +C  ++GG    
Sbjct: 26  GGGGAACYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDC--VRGGG--- 190

Query: 62  KMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDG---------GPLCFNCGEIGHY 112
              G+   GG G   S     C+RC   GH    C  G         G  CF CGE+GH 
Sbjct: 191 ---GSVGIGGGGGGGS-----CFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCGEVGHL 346

Query: 113 ASKCKIKG---------------RLCFNCNQPGHFSRDCKAPKG 141
           A  C ++G                 CFNC +PGHF+R+C    G
Sbjct: 347 ARDCGMEGGRFGGGGGSGGGGGKSTCFNCGKPGHFARECVEASG 478



 Score = 67.0 bits (162), Expect = 4e-12
 Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
 Frame = +2

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           G  C++C   GHLA +C            + +++ GG G    G    C+ C   GH   
Sbjct: 35  GAACYQCGEFGHLARDCN-----------RSSNSGGGGGGSGGG----CFNCGGFGHLAR 169

Query: 95  KCP------------DGGPLCFNCGEIGHYASKCKI-KGRL--------CFNCNQPGHFS 133
            C              GG  CF CG  GH A  C   KG +        CF C + GH +
Sbjct: 170 DCVRGGGGSVGIGGGGGGGSCFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCGEVGHLA 349

Query: 134 RDCKAPKGESSGNTGKG 150
           RDC    G   G  G G
Sbjct: 350 RDCGMEGGRFGGGGGSG 400



 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 31/103 (30%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
 Frame = +2

Query: 70  GGTGNKTSGKIVTCYRCKKVGHYTNKC----------PDGGPLCFNCGEIGHYASKCKI- 118
           G    +  G    CY+C + GH    C             G  CFNCG  GH A  C   
Sbjct: 5   GFGARRNGGGGAACYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDCVRG 184

Query: 119 -----------KGRLCFNCNQPGHFSRDCKAPKGESSGNTGKG 150
                       G  CF C   GH +RDC   KG   G    G
Sbjct: 185 GGGSVGIGGGGGGGSCFRCGGFGHMARDCATGKGNIGGGGSGG 313



 Score = 27.7 bits (60), Expect = 2.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 7   GG*PIGDKDVTCFCCGKFGQFANNC 31
           GG   G    TCF CGK G FA  C
Sbjct: 389 GGSGGGGGKSTCFNCGKPGHFAREC 463


>TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L16.11 -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (10%)
          Length = 1300

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
 Frame = +1

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKM-------KGNDATG 70
           C+ CG  G  A  CS +   CF C + GH A +C       S S          G+D   
Sbjct: 127 CYVCGCLGHNARQCSKVQD-CFICKKGGHRAKDCPEKHTSTSKSIAICLKCGNSGHDIFS 303

Query: 71  GTGNKTSG--KIVTCYRCKKVGHY----TNKCPDGGPLCFNCGEIGHYASKC-KIKGRL- 122
              + +    K + CY CK++GH     T+    G   C+ CG++GH    C +++  + 
Sbjct: 304 CRNDYSQDDLKEIQCYVCKRLGHLCCVNTDDATPGEISCYKCGQLGHTGLACSRLRDEIT 483

Query: 123 -------CFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAEERIHTKE 163
                  CF C + GHF+R+C      SS  +GK       E  HTK+
Sbjct: 484 SGATPSSCFKCGEEGHFAREC-----TSSIKSGKRNW----ESSHTKD 600



 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
 Frame = +1

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGN--KTSGKIVTCYRCKKVGHYTNK 95
           CF C  EGH AVNC  ++      + K     G  G+  +   K+  C+ CKK GH    
Sbjct: 61  CFNCGEEGHAAVNCSAVK------RKKPCYVCGCLGHNARQCSKVQDCFICKKGGHRAKD 222

Query: 96  CPD-------GGPLCFNCGEIGHYASKCK-------IKGRLCFNCNQPGH 131
           CP+          +C  CG  GH    C+       +K   C+ C + GH
Sbjct: 223 CPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCYVCKRLGH 372



 Score = 34.3 bits (77), Expect = 0.028
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
 Frame = +1

Query: 15  DVTCFCCGKFGQFANNCSVIGPR---------CFKCNREGHLAVNC 51
           +++C+ CG+ G     CS +            CFKC  EGH A  C
Sbjct: 409 EISCYKCGQLGHTGLACSRLRDEITSGATPSSCFKCGEEGHFAREC 546



 Score = 26.9 bits (58), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 123 CFNCNQPGHFSRDCKAPK 140
           CFNC + GH + +C A K
Sbjct: 61  CFNCGEEGHAAVNCSAVK 114


>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
          Length = 1138

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 41/147 (27%), Positives = 54/147 (35%), Gaps = 25/147 (17%)
 Frame = +2

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTS 77
           C+ C + G  A++C   G  C  C + GH A  C      P D ++  N    G      
Sbjct: 458 CWNCKEPGHMASSCPNEGI-CHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAEC 634

Query: 78  GKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCK-------------------- 117
                C  C+K GH    CP+  P+C  C   GH A +C                     
Sbjct: 635 TNEKACNNCRKTGHLARDCPND-PICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARG 811

Query: 118 -----IKGRLCFNCNQPGHFSRDCKAP 139
                 +  +C NC Q GH SRDC  P
Sbjct: 812 GGGGGYRDVVCRNCQQLGHMSRDCMGP 892



 Score = 63.5 bits (153), Expect = 4e-11
 Identities = 37/133 (27%), Positives = 52/133 (38%), Gaps = 6/133 (4%)
 Frame = +2

Query: 14  KDVTCFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTG 73
           +D  C  C + G +A  C  +   C  C   GH+A  C T                    
Sbjct: 332 RDNLCKNCKRPGHYARECPNVAI-CHNCGLPGHIASECTTKS------------------ 454

Query: 74  NKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKG------RLCFNCN 127
                    C+ CK+ GH  + CP+ G +C  CG+ GH A +C          RLC NC 
Sbjct: 455 --------LCWNCKEPGHMASSCPNEG-ICHTCGKAGHRARECSAPPMPPGDLRLCNNCY 607

Query: 128 QPGHFSRDCKAPK 140
           + GH + +C   K
Sbjct: 608 KQGHIAAECTNEK 646



 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 35/101 (34%), Positives = 45/101 (43%), Gaps = 2/101 (1%)
 Frame = +2

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCK--TLQGGPSDSKMKGNDATGGTGNK 75
           C  C K G  A +C    P C  CN  GH+A  C    + G  S     G  A GG G  
Sbjct: 650 CNNCRKTGHLARDCPN-DPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARGGGGG- 823

Query: 76  TSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKC 116
              + V C  C+++GH +  C     +C NCG  GH A +C
Sbjct: 824 -GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 943



 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 37/150 (24%), Positives = 51/150 (33%), Gaps = 31/150 (20%)
 Frame = +2

Query: 18  CFCCGKFGQFANNCSV--IGPR----CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGG 71
           C  CGK G  A  CS   + P     C  C ++GH+A  C       ++ K   N    G
Sbjct: 515 CHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAEC-------TNEKACNNCRKTG 673

Query: 72  TGNKTSGKIVTCYRCKKVGHYTNKCPDGGPL-------------------------CFNC 106
              +       C  C   GH   +CP    L                         C NC
Sbjct: 674 HLARDCPNDPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARGGGGGGYRDVVCRNC 853

Query: 107 GEIGHYASKCKIKGRLCFNCNQPGHFSRDC 136
            ++GH +  C     +C NC   GH + +C
Sbjct: 854 QQLGHMSRDCMGPLMICHNCGGRGHLAYEC 943



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 14/38 (36%), Positives = 21/38 (54%)
 Frame = +2

Query: 119 KGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAE 156
           +  LC NC +PGH++R+C  P      N G    +A+E
Sbjct: 332 RDNLCKNCKRPGHYAREC--PNVAICHNCGLPGHIASE 439


>TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (42%)
          Length = 655

 Score = 56.6 bits (135), Expect = 5e-09
 Identities = 41/147 (27%), Positives = 51/147 (33%), Gaps = 28/147 (19%)
 Frame = +3

Query: 21  CGKFGQFANNCSV--IGPR----CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGN 74
           CGK G  A  CS   + P     C  C ++GH+A  C                    T  
Sbjct: 9   CGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAEC--------------------TNE 128

Query: 75  KTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCK----------------- 117
           K       C  C+K GH    CP+  P+C  C   GH A +C                  
Sbjct: 129 KA------CNNCRKTGHLARDCPND-PICNLCNVSGHVARQCPKANVLGDXXGGGGGARG 287

Query: 118 -----IKGRLCFNCNQPGHFSRDCKAP 139
                 +  +C NC Q GH SRDC  P
Sbjct: 288 GGGGGYRDVVCRNCQQLGHMSRDCMGP 368



 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = +3

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTS 77
           C  C K G  A +C    P C  CN  GH+A  C         + + G+   GG G +  
Sbjct: 135 CNNCRKTGHLARDCPN-DPICNLCNVSGHVARQCPK-------ANVLGDXXGGGGGARGG 290

Query: 78  G----KIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKC 116
           G    + V C  C+++GH +  C     +C NCG  GH A +C
Sbjct: 291 GGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 419



 Score = 32.7 bits (73), Expect = 0.081
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +3

Query: 106 CGEIGHYASKCKIKG------RLCFNCNQPGHFSRDCKAPK 140
           CG+ GH A +C          RLC NC + GH + +C   K
Sbjct: 9   CGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEK 131


>TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana genomic DNA,
           chromosome 5, TAC clone:K24M7, partial (36%)
          Length = 1224

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 42/163 (25%), Positives = 56/163 (33%), Gaps = 21/163 (12%)
 Frame = +1

Query: 17  TCFCCGKFGQFANNCSVIGPR-----CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGG 71
           +CF C      A  C           C +C R GH A NC  +  G  D+K         
Sbjct: 268 SCFICKAMDHIAKLCPEKAEWEKNKICLRCRRRGHRAKNCPEVLDGAKDAKY-------- 423

Query: 72  TGNKTSGKIVTCYRCKKVGHYTNKC----PDGGPL---CFNCGEIGHYASKCK------- 117
                      CY C + GH   +C     +GG     CF C + GH +  C        
Sbjct: 424 -----------CYNCGENGHALTQCLHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIY 570

Query: 118 IKGRLCFNCNQPGHFSRDC--KAPKGESSGNTGKGKQLAAEER 158
            KG  C  C    H ++DC  K   G  + N      +  +ER
Sbjct: 571 PKGGCCKICGGVTHLAKDCPDKGKSGSVAANRPADGWMRIDER 699



 Score = 26.6 bits (57), Expect = 5.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
 Frame = +1

Query: 12  GDKDVTCFCCGKFGQFANNCSV----IGPR---CFKCNREGHLAVNC 51
           G K   CF C + G  + NC      I P+   C  C    HLA +C
Sbjct: 487 GTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTHLAKDC 627


>TC227589 
          Length = 547

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 32/110 (29%), Positives = 44/110 (39%), Gaps = 16/110 (14%)
 Frame = +2

Query: 38  CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGN--KTSGKIVTCYRCKKVGHYTNK 95
           CF C  +GH AVNC   +      + K     GG G+  +   K   C+ CKK GH    
Sbjct: 47  CFNCGEDGHAAVNCSAAK------RKKPCYVCGGLGHNARQCTKAQDCFICKKGGHRAKD 208

Query: 96  CPD-------GGPLCFNCGEIGHYASKCK-------IKGRLCFNCNQPGH 131
           C +          +C  CG  GH    C+       +K   C+ C + GH
Sbjct: 209 CLEKHTSRSKSVAICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKRVGH 358



 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 38/123 (30%), Positives = 51/123 (40%), Gaps = 24/123 (19%)
 Frame = +2

Query: 18  CFCCGKFGQFANNC-------SVIGPRCFKCNREGHLAVNCKTLQGGPSD--------SK 62
           CF C K G  A +C       S     C KC   GH   +C+     P D         K
Sbjct: 170 CFICKKGGHRAKDCLEKHTSRSKSVAICLKCGNSGHDMFSCRN-DYSPDDLKEIQCYVCK 346

Query: 63  MKGNDATGGTGNKTSGKIVTCYRCKKVGHY---TNKCPDG------GPLCFNCGEIGHYA 113
             G+     T + T G+I +CY+C ++GH     +K PD          C  CGE GH+A
Sbjct: 347 RVGHLCCVNTDDATPGEI-SCYKCGQLGHTGLACSKLPDEITSAATPSSCCKCGEAGHFA 523

Query: 114 SKC 116
            +C
Sbjct: 524 QEC 532



 Score = 29.6 bits (65), Expect = 0.69
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
 Frame = +2

Query: 15  DVTCFCCGKFGQFANNCSVIGPR---------CFKCNREGHLAVNC 51
           +++C+ CG+ G     CS +            C KC   GH A  C
Sbjct: 395 EISCYKCGQLGHTGLACSKLPDEITSAATPSSCCKCGEAGHFAQEC 532



 Score = 27.3 bits (59), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 123 CFNCNQPGHFSRDCKAPK 140
           CFNC + GH + +C A K
Sbjct: 47  CFNCGEDGHAAVNCSAAK 100


>TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2,
           partial (45%)
          Length = 995

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 25/66 (37%), Positives = 33/66 (49%)
 Frame = +2

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           GP C+ C R GHLA +C   QGG      + N   GG G    G    C+ C + GH+  
Sbjct: 416 GPECYNCGRIGHLARDCYHGQGGGGGDDGR-NRRRGGGGGGGGG----CFNCGEEGHFAR 580

Query: 95  KCPDGG 100
           +CP+ G
Sbjct: 581 ECPNVG 598



 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 20/74 (27%)
 Frame = +2

Query: 99  GGPLCFNCGEIGHYASKCKI--------------------KGRLCFNCNQPGHFSRDCKA 138
           GGP C+NCG IGH A  C                       G  CFNC + GHF+R+C  
Sbjct: 413 GGPECYNCGRIGHLARDCYHGQGGGGGDDGRNRRRGGGGGGGGGCFNCGEEGHFARECP- 589

Query: 139 PKGESSGNTGKGKQ 152
                  N GKG +
Sbjct: 590 -------NVGKGNE 610



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
 Frame = +2

Query: 57  GPSDSKMKGNDATG-GTGNKTSGKIVTCYRCKKVGHYTNKC------------------- 96
           G    +  G +  G G G +  G    CY C ++GH    C                   
Sbjct: 350 GRGGGRYGGGEGRGRGFGRRGGGP--ECYNCGRIGHLARDCYHGQGGGGGDDGRNRRRGG 523

Query: 97  -PDGGPLCFNCGEIGHYASKCKIKGR 121
              GG  CFNCGE GH+A +C   G+
Sbjct: 524 GGGGGGGCFNCGEEGHFARECPNVGK 601



 Score = 29.6 bits (65), Expect = 0.69
 Identities = 16/60 (26%), Positives = 20/60 (32%), Gaps = 20/60 (33%)
 Frame = +2

Query: 18  CFCCGKFGQFANNC--------------------SVIGPRCFKCNREGHLAVNCKTLQGG 57
           C+ CG+ G  A +C                       G  CF C  EGH A  C  +  G
Sbjct: 425 CYNCGRIGHLARDCYHGQGGGGGDDGRNRRRGGGGGGGGGCFNCGEEGHFARECPNVGKG 604


>TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (GRP2)
           (AT4g38680/F20M13_240), partial (42%)
          Length = 891

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 26/72 (36%), Positives = 31/72 (42%)
 Frame = +3

Query: 65  GNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLCF 124
           G    GG G    G    CY+C + GH    C  GG      G  G Y       G  C+
Sbjct: 177 GYGGGGGYGGGGGGGGGGCYKCGETGHIARDCSQGG------GGGGRYGGGGG-GGGSCY 335

Query: 125 NCNQPGHFSRDC 136
           NC + GHF+RDC
Sbjct: 336 NCGESGHFARDC 371



 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           G  C+KC   GH+A +C   QGG    +  G    GG          +CY C + GH+  
Sbjct: 222 GGGCYKCGETGHIARDCS--QGGGGGGRYGGGGGGGG----------SCYNCGESGHFAR 365

Query: 95  KCP 97
            CP
Sbjct: 366 DCP 374



 Score = 28.1 bits (61), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 CFNCNQPGHFSRDCKAPKGESSGNTGKG 150
           C+ C + GH +RDC +  G   G  G G
Sbjct: 231 CYKCGETGHIARDC-SQGGGGGGRYGGG 311


>TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (69%)
          Length = 1623

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 21/55 (38%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
 Frame = +2

Query: 97  PDGGPLCFNCGEIGHYASKCKIKG--RLCFNCNQPGHFSRDCKAPKGESSGNTGK 149
           P G   CFNCG  GH+A  CK       C+ C + GH  R+CK    + S   G+
Sbjct: 296 PPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSTRRGR 460



 Score = 35.4 bits (80), Expect = 0.012
 Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
 Frame = +2

Query: 18  CFCCGKFGQFANNCSVIG--PRCFKCNREGHLAVNCK 52
           CF CG  G +A +C       +C++C   GH+  NCK
Sbjct: 314 CFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCK 424



 Score = 34.3 bits (77), Expect = 0.028
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 83  CYRCKKVGHYTNKCPDGG--PLCFNCGEIGHYASKCK 117
           C+ C   GH+   C  G     C+ CGE GH    CK
Sbjct: 314 CFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCK 424



 Score = 32.0 bits (71), Expect = 0.14
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +2

Query: 37  RCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC 96
           RCF C  +GH A +CK                 G   NK       CYRC + GH    C
Sbjct: 311 RCFNCGLDGHWARDCK----------------AGDWKNK-------CYRCGERGHIERNC 421


>TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like protein, partial
           (62%)
          Length = 1131

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 26/47 (54%), Gaps = 3/47 (6%)
 Frame = +1

Query: 97  PDGGPLCFNCGEIGHYASKCKIKG--RLCFNCNQPGHFSRDCK-APK 140
           P G   CFNCG  GH+A  CK       C+ C + GH  ++CK +PK
Sbjct: 346 PPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPK 486



 Score = 35.8 bits (81), Expect = 0.010
 Identities = 21/68 (30%), Positives = 28/68 (40%), Gaps = 5/68 (7%)
 Frame = +1

Query: 55  QGGPSDSKMK---GNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGG--PLCFNCGEI 109
           +GGP  S+ +   G     G+G         C+ C   GH+   C  G     C+ CGE 
Sbjct: 295 KGGPRGSRDREYMGRGPPPGSGR--------CFNCGIDGHWARDCKAGDWKNKCYRCGER 450

Query: 110 GHYASKCK 117
           GH    CK
Sbjct: 451 GHIEKNCK 474



 Score = 35.4 bits (80), Expect = 0.012
 Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
 Frame = +1

Query: 18  CFCCGKFGQFANNCSVIG--PRCFKCNREGHLAVNCK 52
           CF CG  G +A +C       +C++C   GH+  NCK
Sbjct: 364 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 474



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +1

Query: 37  RCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC 96
           RCF C  +GH A +CK                 G   NK       CYRC + GH    C
Sbjct: 361 RCFNCGIDGHWARDCK----------------AGDWKNK-------CYRCGERGHIEKNC 471


>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
           (77%)
          Length = 883

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 29/97 (29%), Positives = 36/97 (36%), Gaps = 7/97 (7%)
 Frame = +3

Query: 35  GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
           G  C+ C   GHLA +C    GG    +  G    G  G    G+ V             
Sbjct: 426 GGACYNCGESGHLARDCS---GGGGGDRYGGGGGGGRYGGGGGGRYVG----------GG 566

Query: 95  KCPDGGPLCFNCGEIGHYASKCKIKGR-------LCF 124
               GG  C++CGE GH+A  C    R       LCF
Sbjct: 567 GGGGGGGSCYSCGESGHFARDCPSSAR*IYC*GCLCF 677



 Score = 37.7 bits (86), Expect = 0.003
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 32/70 (45%)
 Frame = +3

Query: 99  GGPLCFNCGEIGHYASKCK--------------------------------IKGRLCFNC 126
           GG  C+NCGE GH A  C                                   G  C++C
Sbjct: 423 GGGACYNCGESGHLARDCSGGGGGDRYGGGGGGGRYGGGGGGRYVGGGGGGGGGGSCYSC 602

Query: 127 NQPGHFSRDC 136
            + GHF+RDC
Sbjct: 603 GESGHFARDC 632



 Score = 36.2 bits (82), Expect = 0.007
 Identities = 30/105 (28%), Positives = 39/105 (36%), Gaps = 7/105 (6%)
 Frame = +3

Query: 7   GG*PIGDKDVTCFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGN 66
           GG   G     C+ CG+ G  A +CS  G      +R G      +   GG    +  G 
Sbjct: 402 GGGGRGGGGGACYNCGESGHLARDCSGGGGG----DRYGGGGGGGR--YGGGGGGRYVGG 563

Query: 67  DATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDG-------GPLCF 104
              GG G        +CY C + GH+   CP         G LCF
Sbjct: 564 GGGGGGGG-------SCYSCGESGHFARDCPSSAR*IYC*GCLCF 677



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 12/31 (38%), Positives = 15/31 (47%)
 Frame = +3

Query: 120 GRLCFNCNQPGHFSRDCKAPKGESSGNTGKG 150
           G  C+NC + GH +RDC    G      G G
Sbjct: 426 GGACYNCGESGHLARDCSGGGGGDRYGGGGG 518


>TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), partial (6%)
          Length = 1204

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
 Frame = -3

Query: 83  CYRCKKVGHYTNKCPD------GGPLCFNCGEIGHYASKCKIK----GRL--CFNCNQPG 130
           C  C++ GH   +C           +CF CGEIGH   KC +     GR   C  C   G
Sbjct: 521 CRACRQPGHRFQQCQRLKCLSMDEEVCFFCGEIGHSLGKCDVSQAGGGRFAKCLLCYGHG 342

Query: 131 HFSRDC 136
           HFS +C
Sbjct: 341 HFSYNC 324



 Score = 32.7 bits (73), Expect = 0.081
 Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
 Frame = -3

Query: 12  GDKDVTCFCCGKFGQFANNC------SVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKG 65
           G+  + C  C + G     C      S+    CF C   GH    C   Q G        
Sbjct: 539 GESSLRCRACRQPGHRFQQCQRLKCLSMDEEVCFFCGEIGHSLGKCDVSQAG-------- 384

Query: 66  NDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGG 100
                       G+   C  C   GH++  CP  G
Sbjct: 383 -----------GGRFAKCLLCYGHGHFSYNCPQNG 312


>TC233976 
          Length = 763

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 25/89 (28%), Positives = 35/89 (39%)
 Frame = +1

Query: 54  LQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYA 113
           L GG S    + +   G  G+     + T  RC+K                 CG +GH A
Sbjct: 175 LAGGSSQLVNRVSQPAGRGGSGAPAIVTTPLRCRK-----------------CGRLGHNA 303

Query: 114 SKCKIKGRLCFNCNQPGHFSRDCKAPKGE 142
            +C  +   CFN    GH S +C  P+ E
Sbjct: 304 HECTYREVTCFNYQGKGHLSTNCPHPRKE 390



 Score = 33.5 bits (75), Expect = 0.047
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 18  CFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNC 51
           C  CG+ G  A+ C+     CF    +GHL+ NC
Sbjct: 271 CRKCGRLGHNAHECTYREVTCFNYQGKGHLSTNC 372


>TC206179 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (16%)
          Length = 407

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 86  CKKVGHYTNKCPDGGPLCFNCGEIGHYASK 115
           CK+ GHY  +CP+   +C NCG  GH AS+
Sbjct: 321 CKRPGHYARECPNVA-ICHNCGLPGHIASE 407



 Score = 32.7 bits (73), Expect = 0.081
 Identities = 13/31 (41%), Positives = 17/31 (53%)
 Frame = +3

Query: 105 NCGEIGHYASKCKIKGRLCFNCNQPGHFSRD 135
           NC   GHYA +C     +C NC  PGH + +
Sbjct: 318 NCKRPGHYARECP-NVAICHNCGLPGHIASE 407



 Score = 27.3 bits (59), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +3

Query: 125 NCNQPGHFSRDCKAPKGESSGNTGKGKQLAAE 156
           NC +PGH++R+C  P      N G    +A+E
Sbjct: 318 NCKRPGHYAREC--PNVAICHNCGLPGHIASE 407


>TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
           factor), partial (72%)
          Length = 820

 Score = 36.2 bits (82), Expect = 0.007
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 47  LAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC 96
           L+VN     GG            GG G ++ G  + CY C + GH+  +C
Sbjct: 139 LSVNWMARMGGRVKLSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFAREC 288



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 123 CFNCNQPGHFSRDCKAPKG 141
           C+ C +PGHF+R+C+   G
Sbjct: 247 CYECGEPGHFARECRMRGG 303


>AW203350 
          Length = 411

 Score = 33.5 bits (75), Expect = 0.047
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 123 CFNCNQPGHFSRDC--KAPKGESSGNT 147
           C+ C +PGH+SRDC   AP    + NT
Sbjct: 16  CYKCGKPGHWSRDCPFSAPNPNPNSNT 96



 Score = 30.0 bits (66), Expect = 0.52
 Identities = 10/24 (41%), Positives = 13/24 (53%)
 Frame = +1

Query: 78  GKIVTCYRCKKVGHYTNKCPDGGP 101
           G    CY+C K GH++  CP   P
Sbjct: 1   GTATGCYKCGKPGHWSRDCPFSAP 72


>TC232026 
          Length = 689

 Score = 33.1 bits (74), Expect = 0.062
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
 Frame = +2

Query: 31  CSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMK-------------GNDATGGTGN--K 75
           CS+    C+KC R GHLA +C    G    S +              G D      N  +
Sbjct: 29  CSLSTYECWKCQRPGHLAEDCMVTDGSNRSSSIPKDXLQLYRRCHQIGKDLLAANCNVCR 208

Query: 76  TSGKIVTCYRCKKV 89
            S  + TC  C  V
Sbjct: 209 RSSNLATCLDCSIV 250



 Score = 32.7 bits (73), Expect = 0.081
 Identities = 14/51 (27%), Positives = 23/51 (44%), Gaps = 1/51 (1%)
 Frame = +2

Query: 111 HYASK-CKIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAEERIH 160
           H++ K C +    C+ C +PGH + DC    G +  ++     L    R H
Sbjct: 11  HWSKKTCSLSTYECWKCQRPGHLAEDCMVTDGSNRSSSIPKDXLQLYRRCH 163


>TC224993 homologue to UP|Q9W3A9 (Q9W3A9) CG12660-PA, partial (15%)
          Length = 526

 Score = 33.1 bits (74), Expect = 0.062
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +1

Query: 100 GPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFS 133
           G  CFNCG+ GH AS C  + R+ F     GHFS
Sbjct: 82  GGACFNCGKPGHRASDCITQKRVFF*F---GHFS 174



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 119 KGRLCFNCNQPGHFSRDCKAPK 140
           +G  CFNC +PGH + DC   K
Sbjct: 79  RGGACFNCGKPGHRASDCITQK 144


>TC227590 similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2, partial
          (7%)
          Length = 586

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 18/42 (42%), Positives = 21/42 (49%)
 Frame = +3

Query: 38 CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGK 79
          CFKC  EGH A  C +    P  S  KGN  +  T +K S K
Sbjct: 9  CFKCGEEGHFARECTSSINFPPQSG-KGNWESSRTKDKRSQK 131



 Score = 29.6 bits (65), Expect = 0.69
 Identities = 14/44 (31%), Positives = 21/44 (46%), Gaps = 8/44 (18%)
 Frame = +3

Query: 123 CFNCNQPGHFSRDC--------KAPKGESSGNTGKGKQLAAEER 158
           CF C + GHF+R+C        ++ KG    +  K K+   E R
Sbjct: 9   CFKCGEEGHFARECTSSINFPPQSGKGNWESSRTKDKRSQKENR 140



 Score = 28.5 bits (62), Expect = 1.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 103 CFNCGEIGHYASKC 116
           CF CGE GH+A +C
Sbjct: 9   CFKCGEEGHFAREC 50



 Score = 26.6 bits (57), Expect = 5.8
 Identities = 41/170 (24%), Positives = 63/170 (36%), Gaps = 22/170 (12%)
 Frame = +3

Query: 17  TCFCCGKFGQFANNCSV---IGPRCFKCNREGHLAVNCKTL--------QGGPSD---SK 62
           +CF CG+ G FA  C+      P+  K N E     + ++         +  P+D   ++
Sbjct: 6   SCFKCGEEGHFARECTSSINFPPQSGKGNWESSRTKDKRSQKENRYMGNRSAPNDISGAR 185

Query: 63  MKGNDATGGTG------NKTSGKIVTCYRCKKVGHYTNKCPD--GGPLCFNCGEIGHYAS 114
            K    T   G      +K+ G  +  Y  K+ G  T K     GG    +  E   YA+
Sbjct: 186 RKKRSPTEERGFSTPKKSKSRGGWMAEYPTKERGFTTPKKSKSRGGCTTEHPSEQQDYAT 365

Query: 115 KCKIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAEERIHTKEG 164
             K K R  +    P  F     +    S G    G   +  +RIH+  G
Sbjct: 366 PKKSKSRGGWTSEHPEEFFPPLSS---RSKGYRSPGTPSSRNDRIHSFGG 506


>TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
           factor), partial (72%)
          Length = 1003

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 70  GGTGNKTSGKIVTCYRCKKVGHYTNKC 96
           GG G ++ G  + CY C + GH+  +C
Sbjct: 795 GGRGGRSGGSDLKCYECGEPGHFAREC 875



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 123 CFNCNQPGHFSRDCKAPKG 141
           C+ C +PGHF+R+C+   G
Sbjct: 834 CYECGEPGHFARECRMRGG 890



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 103 CFNCGEIGHYASKCKIKG 120
           C+ CGE GH+A +C+++G
Sbjct: 834 CYECGEPGHFARECRMRG 887


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.140    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,502,035
Number of Sequences: 63676
Number of extensions: 187996
Number of successful extensions: 1215
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of query: 165
length of database: 12,639,632
effective HSP length: 90
effective length of query: 75
effective length of database: 6,908,792
effective search space: 518159400
effective search space used: 518159400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)