TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0304.9
         (156 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231636                                                              155  6e-39
TC204006 homologue to UP|Q9FF57 (Q9FF57) Similarity to lysophosp...    27  5.2
BU082949                                                               26  8.9

>TC231636 
          Length = 871

 Score =  155 bits (393), Expect = 6e-39
 Identities = 93/152 (61%), Positives = 106/152 (69%), Gaps = 9/152 (5%)
 Frame = +1

Query: 2   TTLEISMVSVEGLGKYSSSYF------ITLTNLSNHLVYS-YDGGGAEEHMFRVPVDHTF 54
           TTLEI +VS EGL + SSSYF      ITLT L  H+VY  YD GG  E +FRVPVD TF
Sbjct: 160 TTLEICVVSAEGLKQQSSSYFSCIRPFITLTKLPAHMVYHHYDEGGTGEQVFRVPVDPTF 339

Query: 55  FFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCR 114
           F DT +S L L LYNKRR  G TQLG C+IP  DI    L+   +VRYLSYRLRA DG R
Sbjct: 340 FSDT-YSRLHLQLYNKRRFAGLTQLGSCLIPPSDIA---LQPYHSVRYLSYRLRAKDGSR 507

Query: 115 SDIIINLSVKLLGSP--DTCQTVIGIPVTAVR 144
           + + +NLS++L GSP  DTCQ VIGIPVTAVR
Sbjct: 508 THLTVNLSIRLHGSPDLDTCQPVIGIPVTAVR 603


>TC204006 homologue to UP|Q9FF57 (Q9FF57) Similarity to lysophosphatidic acid
           acyltransferase, partial (43%)
          Length = 786

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 13/23 (56%), Positives = 15/23 (64%)
 Frame = -3

Query: 54  FFFDTQHSSLQLHLYNKRRILGP 76
           FFFD     L+LH  N+RR LGP
Sbjct: 181 FFFDVPR--LELHRVNRRRDLGP 119


>BU082949 
          Length = 428

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 58  TQHSSLQLHLYNKRRILGPTQLGWCMIPALDIG 90
           ++H+ ++   + KRR+  PT  G+C+   L++G
Sbjct: 305 SEHNDVKTLKFMKRRVHVPTNRGYCLQYFLNLG 403


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,882,627
Number of Sequences: 63676
Number of extensions: 94696
Number of successful extensions: 375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of query: 156
length of database: 12,639,632
effective HSP length: 89
effective length of query: 67
effective length of database: 6,972,468
effective search space: 467155356
effective search space used: 467155356
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)