BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0304.11
(1797 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 137 3e-32
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 61 1e-18
CO982349 86 2e-16
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 65 7e-16
TC213164 79 1e-14
AW757033 68 4e-11
TC212765 50 1e-10
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase... 64 6e-10
BI972659 60 1e-08
BI321779 59 2e-08
CA851030 52 3e-06
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 45 4e-04
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 42 0.002
BG405621 42 0.002
AI496436 42 0.003
BI315739 31 0.004
CA936755 41 0.005
TC233219 weakly similar to UP|Q8LKI9 (Q8LKI9) NBS/LRR resistance... 40 0.012
BF596367 37 0.078
TC210821 similar to UP|O22265 (O22265) Expressed protein (At2g47... 35 0.23
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase (Fragment)
, partial (59%)
Length = 1077
Score = 137 bits (346), Expect = 3e-32
Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 2/305 (0%)
Frame = +1
Query: 980 LIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLV 1039
LIA+E+ + R +K L K+D KAYD V W FL + F W+ + V
Sbjct: 13 LIANEV---IDEAKRSNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEECV 183
Query: 1040 RGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLS 1099
+ S VNG + +++PQRGLRQGDPL+P+LF +V + L+ ++ +A + + +
Sbjct: 184 KSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLVG 363
Query: 1100 PSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTL 1159
+ I+ L +ADD++ F +A ++ +L +F S+ RIN +KS +
Sbjct: 364 ANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVF-GVTDQ 540
Query: 1160 LKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAW--IKERMKEKIAGWKEVLLNQAG 1217
K + N P YLG+P G + R W I + + K++ WK ++ G
Sbjct: 541 WKQEAANYLHCSLLAFPFIYLGIPI--GANSRRCHMWDSIIRKCERKLSKWK*RHISFGG 714
Query: 1218 KEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSK 1277
+ LIKSV+ SIP Y + P+ +L + F W + I W L K
Sbjct: 715 RVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPK 894
Query: 1278 KEGGM 1282
+ GG+
Sbjct: 895 ERGGI 909
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 60.8 bits (146), Expect(2) = 1e-18
Identities = 34/131 (25%), Positives = 66/131 (49%)
Frame = -2
Query: 1106 THLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMT 1165
+H+ ADD ++F K T + ++ + + + Q I+ KS + IP ++
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGS-IPGQRLRVIS 275
Query: 1166 NIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSV 1225
++ Q + P +Y G+P G+ R L + +++K K+A WK +L+ G+ L+ SV
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 1226 IQSIPTYAMAV 1236
I + Y+ +V
Sbjct: 94 IHGMLLYSFSV 62
Score = 52.4 bits (124), Expect(2) = 1e-18
Identities = 30/99 (30%), Positives = 53/99 (53%)
Frame = -3
Query: 975 IQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSL 1034
I+D + E+ + L + +LA+K+D+ KA+D ++ +FL L +G+ + +
Sbjct: 834 IKDCTCVTSEVINMLDKK--VFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNW 661
Query: 1035 VMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLF 1073
+ ++ VNG + QRG+RQGDPLSP L+
Sbjct: 660 IRVILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
>CO982349
Length = 795
Score = 85.5 bits (210), Expect = 2e-16
Identities = 57/239 (23%), Positives = 105/239 (43%)
Frame = +3
Query: 1035 VMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQ 1094
+ + S VN ++ PQRGLRQGDPL+P LF +V + L+ ++ +A ++
Sbjct: 72 IRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFN 251
Query: 1095 GIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSK 1154
+ + ++ L +ADD++ F +AT + +L F AS +IN ++S
Sbjct: 252 SFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGAIW 431
Query: 1155 HIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLN 1214
P + P YLG+P I + + K+A WK+ ++
Sbjct: 432 K-PDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHIS 608
Query: 1215 QAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSL 1273
G+ LI +++ ++P Y + P ++L ++ +F W R I W ++
Sbjct: 609 LGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETV 785
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like protein
{Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 65.1 bits (157), Expect(2) = 7e-16
Identities = 34/100 (34%), Positives = 56/100 (56%)
Frame = -3
Query: 1049 NGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHL 1108
NG + + P G+RQ DP++PYLFVL ++ LSH+I N+ + I+++ I+HL
Sbjct: 635 NGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKKL*RSIQVNRGGLLISHL 456
Query: 1109 FFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKS 1148
F DD ++F +A + L FS +S ++N K+
Sbjct: 455 AFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKT 336
Score = 38.9 bits (89), Expect(2) = 7e-16
Identities = 19/84 (22%), Positives = 46/84 (54%)
Frame = -2
Query: 1151 STSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKE 1210
S SK++ ++ +++ + + ++ G YLG+P + +I +++ ++ + WK
Sbjct: 327 SFSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKS 148
Query: 1211 VLLNQAGKEVLIKSVIQSIPTYAM 1234
LL+ G+ L K V+ ++P++ M
Sbjct: 147 NLLSMVGRLTLTK*VV*ALPSHIM 76
>TC213164
Length = 446
Score = 79.3 bits (194), Expect = 1e-14
Identities = 40/126 (31%), Positives = 68/126 (53%)
Frame = +3
Query: 860 EEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVA 919
+E++ + K+PGPDGLN F K W+++ ++ + F+ N +A
Sbjct: 39 KEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKRSNAFFLA 218
Query: 920 LVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNI 979
L+PK+ N+Y+PIS +YKI++K++ R K L II Q+ F++ R N+
Sbjct: 219 LIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEGRHTLHNV 398
Query: 980 LIAHEI 985
+IA+EI
Sbjct: 399 VIANEI 416
>AW757033
Length = 441
Score = 67.8 bits (164), Expect = 4e-11
Identities = 41/144 (28%), Positives = 69/144 (47%)
Frame = -2
Query: 1053 SRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFAD 1112
+R++ P RGLRQGDPL+P LF + + L+ ++ +A + H + + ++ L +AD
Sbjct: 440 TREFSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYAD 261
Query: 1113 DSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPT 1172
D++ F +AT + +L F AS +IN +KS +P + +
Sbjct: 260 DTIFFGEATMENVRVIKTILRGFELASGLKINFAKSRFGAIS-VPD*WRKEAAEFMNCSL 84
Query: 1173 WEEPGHYLGLPAVWGRSKTRALAW 1196
P YLG+P G + R W
Sbjct: 83 LSLPFSYLGIPI--GANPRRRETW 18
>TC212765
Length = 637
Score = 49.7 bits (117), Expect(2) = 1e-10
Identities = 38/121 (31%), Positives = 54/121 (44%)
Frame = +3
Query: 1070 PYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFV 1129
PYLFVL M+ L+ I +Q + I +S + +L DD +F A AY
Sbjct: 15 PYLFVLCMERLALCIHDLTSQ*IWRPILVSDDNRLVPYLMLVDDIFLFINAIGD*AYLAS 194
Query: 1130 QLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRS 1189
L F ++N KSSM S + +L+ ++N I G YL L + GRS
Sbjct: 195 LTL*NFFQTFGLKLNLDKSSMYCS*RMAPVLRDLISNTLNIVHAPSLGKYLCLKFIHGRS 374
Query: 1190 K 1190
K
Sbjct: 375 K 377
Score = 36.6 bits (83), Expect(2) = 1e-10
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 1205 IAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRG 1264
+A WK LLNQA K L V+ + P Y M + P+ + +D W NK
Sbjct: 416 LASWKGKLLNQASKHCLT*LVLHAFPIYPMEASWLPQSIFQAIDKASRVTIW--NKVGAS 589
Query: 1265 IHLKDWHSLT 1274
+ WHS++
Sbjct: 590 L---SWHSVS 610
>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (15%)
Length = 376
Score = 63.9 bits (154), Expect = 6e-10
Identities = 30/88 (34%), Positives = 47/88 (53%)
Frame = -2
Query: 862 IKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALV 921
IK S+K+PGPDGLN F K W + P++ ++ F N + +AL+
Sbjct: 375 IKSAVWQCGSVKSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALI 196
Query: 922 PKIPSLEMANQYRPISCCNYLYKIISKV 949
PK+ + N +RPIS +YKI++K+
Sbjct: 195 PKVKHPQALNDFRPISLIGCVYKIVAKI 112
>BI972659
Length = 453
Score = 59.7 bits (143), Expect = 1e-08
Identities = 38/132 (28%), Positives = 59/132 (43%), Gaps = 2/132 (1%)
Frame = +1
Query: 1131 LLNTFSSASSQRINTSKSSMSTSKHIPTLLK--TQMTNIFQIPTWEEPGHYLGLPAVWGR 1188
+L F S RIN +KS P Q+ N Q+ + P HYLG+P
Sbjct: 43 MLRGFEMVSGLRINYAKSQFGIVGFQPNWAHDAAQLLNCRQL---DIPFHYLGMPIAVKA 213
Query: 1189 SKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELD 1248
S + + K K++ W + L+ G+ LIKSV+ ++P Y ++ P+ +L
Sbjct: 214 SSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKIPQRIVDKLV 393
Query: 1249 SLVARFWWSNNK 1260
SL F W N+
Sbjct: 394 SLQRTFMWGGNQ 429
>BI321779
Length = 421
Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/99 (36%), Positives = 48/99 (48%)
Frame = +2
Query: 850 NNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTL 909
N L++ EEIK V +S K+PGPDG + L K W V+ EV + F L
Sbjct: 74 NAMLIQDFEVEEIKKVI*DCESSKSPGPDGYSLLLIKIFWEVIKEEVINFFKEFHKFDFL 253
Query: 910 SPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISK 948
N + +AL+ K + QY PIS LYKI+ K
Sbjct: 254 PRGTNRSFIALIAKCDNPLDIGQYCPISLVGCLYKIV*K 370
>CA851030
Length = 358
Score = 51.6 bits (122), Expect = 3e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +1
Query: 757 LWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGS 806
L +QEE +W RSR W + D+NT FFH T+QR+ N I +++D G+
Sbjct: 160 LLKQEEEYWQQRSRAIWFKERDKNTEFFHRKTLQRKASNSITKIQDDEGN 309
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase homolog
T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 44.7 bits (104), Expect = 4e-04
Identities = 30/120 (25%), Positives = 55/120 (45%)
Frame = +2
Query: 1246 ELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNT 1305
+L+SL RF W SR I +W ++ K +GG+G ++ N + K W +
Sbjct: 38 KLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLGKWRWDLFYI 217
Query: 1306 PHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRANQRQELLDRQRNLGCRGWSYHKLMGG 1365
A+V+++ Y + + + DS W+ + + L QRN+ + + K+ GG
Sbjct: 218 QQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQL--QRNIPLKRETIWKVGGG 391
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/97 (23%), Positives = 45/97 (45%)
Frame = +2
Query: 1217 GKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCS 1276
G+ LIKSV+ ++P ++ P+ +L +L +F W + I W +
Sbjct: 8 GRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICNP 187
Query: 1277 KKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQV 1313
K +GG+G ++ N A + W + + + L A++
Sbjct: 188 KIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>BG405621
Length = 402
Score = 42.4 bits (98), Expect = 0.002
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +2
Query: 651 LILDPVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGL- 709
L LD + GR F +E W ++V W+ P N L +K+ + L
Sbjct: 2 LYLDASKRRIFGRNFIFENSWLLEPGLEEIVHFGWSK-PLSNN----LISKLNC*IVALM 166
Query: 710 --TKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWST 767
T ++ + +IE + + + H ++ + +A++ QEE +W
Sbjct: 167 K*TNEGRILKRKFHDQIEACRKDIEASRFF-HDPVNDARY*EAQAKLNNFIAQEESYWQQ 343
Query: 768 RSRLQWAQWGDRNTHFFHA 786
RS++ W ++GD N+ FFH+
Sbjct: 344 RSKIFWLKYGDLNSKFFHS 400
>AI496436
Length = 414
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +1
Query: 1131 LLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSK 1190
+L F +S +IN +KS T + + + + P YLG+P G +
Sbjct: 4 ILRCFELSSGLKINFAKSQFGTICK-SDIWRKEAADYLNSSVLSMPFVYLGIPI--GANS 174
Query: 1191 TRALAW--IKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFP 1240
+ W + + + K+A WK+ ++ G+ LI SV+ ++P Y ++ P
Sbjct: 175 RHSDVWEPVVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIP 330
>BI315739
Length = 442
Score = 31.2 bits (69), Expect(2) = 0.004
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 1067 PLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLF 1109
PLSPYLF + M+ L+ +I N+ + IK+S + P I+ ++
Sbjct: 48 PLSPYLF*ICMEKLAILIQSKVNEETWEPIKISRNGPGISPIY 176
Score = 29.3 bits (64), Expect(2) = 0.004
Identities = 16/52 (30%), Positives = 24/52 (45%)
Frame = +2
Query: 1105 ITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHI 1156
I+HLFF D+ L+F KAT + +L F + KS K++
Sbjct: 164 ISHLFFPDNCLLFVKATSSQVKLVRDVLQQFCLT*GLKAGLQKSRFLA*KNV 319
>CA936755
Length = 424
Score = 40.8 bits (94), Expect = 0.005
Identities = 20/86 (23%), Positives = 38/86 (43%)
Frame = -2
Query: 629 WRSLYPHALVVALPVVSSDHSPLILDPVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTT 688
W +P + LP SDH P+I+ + F+ +W K ++V + W+
Sbjct: 276 WLLSWPDSSQYTLPRDFSDHCPIIMQTKKVDWGPKPFRVVDWWLHQKGYQRLVRETWSAE 97
Query: 689 PQGENDWETLQNKVKSCQIGLTKWQK 714
Q L+NK++ ++ + +W K
Sbjct: 96 QQPGWGGILLKNKLRMLKLSIKQWSK 19
>TC233219 weakly similar to UP|Q8LKI9 (Q8LKI9) NBS/LRR resistance protein-like
protein (Fragment), partial (74%)
Length = 781
Score = 39.7 bits (91), Expect = 0.012
Identities = 24/67 (35%), Positives = 34/67 (49%)
Frame = +3
Query: 1018 LEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVM 1077
L KAL G ++ + ++ VS + G S + GL QG LSPYLF L++
Sbjct: 3 LWKALEKKGVRVAYIRAIQDMYDRVSTSVRTQGGESDDFPITIGLHQGSTLSPYLFTLIL 182
Query: 1078 DVLSHMI 1084
DVL+ I
Sbjct: 183 DVLTEQI 203
>BF596367
Length = 419
Score = 37.0 bits (84), Expect = 0.078
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 1293 AHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPK 1330
A + KQ WR+ + LV V+ A YFP+SS LDA K
Sbjct: 82 AMLAKQMWRLIDNKDALVT*VLTAKYFPNSSLLDAKKK 195
>TC210821 similar to UP|O22265 (O22265) Expressed protein
(At2g47450/T30B22.25), partial (29%)
Length = 639
Score = 35.4 bits (80), Expect = 0.23
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = -3
Query: 248 *PKSPAHQHKLPLSRGLYWNGPQES*PTTTTE*KSRGPTPFYPTSCFELIPKTSYSHHDP 307
*PK+PA H LP SR PQ T + +S P P TS P + HH P
Sbjct: 343 *PKTPASLHPLPFSRA----PPQRR--RTRGQPRSLSPNPPPQTS-----PSPTRWHHRP 197
Query: 308 TPLEEPPQNHP 318
+ ++ P +HP
Sbjct: 196 STAQDTPNSHP 164
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,779,656
Number of Sequences: 63676
Number of extensions: 1617032
Number of successful extensions: 10912
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 10363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10833
length of query: 1797
length of database: 12,639,632
effective HSP length: 111
effective length of query: 1686
effective length of database: 5,571,596
effective search space: 9393710856
effective search space used: 9393710856
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0304.11