BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0302a.10
(243 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232616 similar to GB|AAD25756.1|4587525|T5I8 Contains the PF|0... 29 2.2
BM270596 28 3.8
TC231481 similar to UP|Q9MAL1 (Q9MAL1) F27F5.5, partial (44%) 28 3.8
TC204112 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 28 3.8
TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 28 3.8
TC204113 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 28 3.8
BQ080547 similar to PIR|T07078|T070 cold stress protein SRC1 - s... 28 4.9
BG352793 27 6.4
TC207204 weakly similar to UP|O81121 (O81121) Nodulin-like prote... 27 8.4
TC229558 27 8.4
TC226825 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydra... 27 8.4
TC210263 weakly similar to GB|AAO39920.1|28372876|BT003692 At1g6... 27 8.4
TC220755 27 8.4
>TC232616 similar to GB|AAD25756.1|4587525|T5I8 Contains the PF|00650
CRAL/TRIO phosphatidyl-inositol-transfer protein domain.
ESTs gb|T76582, gb|N06574 and gb|Z25700 come from this
gene. {Arabidopsis thaliana;} , partial (48%)
Length = 1214
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/44 (31%), Positives = 26/44 (58%), Gaps = 5/44 (11%)
Frame = -2
Query: 74 HILSQVFVNIII*FIFLFSFVLIQYLQYISCNCWV-----QDTF 112
HI+ F ++ F+FLF+F+L+ ++ + S W+ QD+F
Sbjct: 463 HIILLYFNPFLLLFLFLFTFILLLFILW*SFLLWIKKGVPQDSF 332
>BM270596
Length = 422
Score = 28.1 bits (61), Expect = 3.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 87 FIFLFSFVLIQYLQYISCNCWVQDTFDIDQTEHNKE 122
++F+F F+LI + + C+C + Q HN E
Sbjct: 126 YVFVF*FILINIIIFFICHCIPLKQYSWPQVPHNGE 19
>TC231481 similar to UP|Q9MAL1 (Q9MAL1) F27F5.5, partial (44%)
Length = 677
Score = 28.1 bits (61), Expect = 3.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 175 PTYKEMSARNKANKSKQVINHRCGRKSFQAVSYDARDPETQKEPN 219
P + + AR +N S ++RC ++ S +R + QKEPN
Sbjct: 308 PNLRFLRARGCSNSSTSKASNRCILQNHGETSNSSRKKKIQKEPN 174
>TC204112 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 714
Score = 28.1 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 10/56 (17%)
Frame = +2
Query: 4 AGRGKTTGTSVTKKKMKSATGKLPLCIPLDKMV----------AVGPGAPDFVTEI 49
AGRGKT G+S KK S + K L P+ ++ VG GAP ++ +
Sbjct: 89 AGRGKTLGSSAA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 253
>TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 816
Score = 28.1 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 10/56 (17%)
Frame = +2
Query: 4 AGRGKTTGTSVTKKKMKSATGKLPLCIPLDKMV----------AVGPGAPDFVTEI 49
AGRGKT G+S KK S + K L P+ ++ VG GAP ++ +
Sbjct: 116 AGRGKTLGSSAA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 280
>TC204113 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 803
Score = 28.1 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 10/56 (17%)
Frame = +2
Query: 4 AGRGKTTGTSVTKKKMKSATGKLPLCIPLDKMV----------AVGPGAPDFVTEI 49
AGRGKT G+S KK S + K L P+ ++ VG GAP ++ +
Sbjct: 113 AGRGKTLGSSAA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 277
>BQ080547 similar to PIR|T07078|T070 cold stress protein SRC1 - soybean,
partial (85%)
Length = 345
Score = 27.7 bits (60), Expect = 4.9
Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 13/89 (14%)
Frame = +3
Query: 133 GSHRGKLH---------EHFKKYETNEMALEHKPDEISEEDWEHLVDKFSSPTYKEMSA- 182
G ++G+ H EH +++ E +EHKP E E +DK + E A
Sbjct: 84 GEYKGEHHGEHSSEYKGEHHGEHKAGEFFVEHKP-----EHKEGFLDKVKDKIHGEGGAA 248
Query: 183 ---RNKANKSKQVINHRCGRKSFQAVSYD 208
+ K K K+ H G S + D
Sbjct: 249 EGEKXKXEKKKKEHGHEHGHDSSSSRDXD 335
>BG352793
Length = 462
Score = 27.3 bits (59), Expect = 6.4
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 4/35 (11%)
Frame = +3
Query: 76 LSQVFVNIII*FIFLFSFVLI----QYLQYISCNC 106
L +FV +++ FI++ FVL QYL ISC C
Sbjct: 102 LQVIFVLLLLSFIYILIFVLHLKIKQYLPNISCLC 206
>TC207204 weakly similar to UP|O81121 (O81121) Nodulin-like protein
(Fragment), partial (29%)
Length = 1378
Score = 26.9 bits (58), Expect = 8.4
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +3
Query: 94 VLIQYLQYISCNCWVQDTFDIDQTEHNKEVILNTAKRLYGSHRGKLH 140
+L+ ++ SC+ + F++D+ NKE++ R+ G H
Sbjct: 795 LLLHHIWNFSCSLLMCSIFELDRCSQNKEILCTAL*RVSNLKSGSKH 935
>TC229558
Length = 1021
Score = 26.9 bits (58), Expect = 8.4
Identities = 15/56 (26%), Positives = 25/56 (43%)
Frame = +3
Query: 53 VKKKAPFNVKGWKKVPDTAKDHILSQVFVNIII*FIFLFSFVLIQYLQYISCNCWV 108
+K+ P + WK P + LSQ FS V ++ +++I NCW+
Sbjct: 690 MKR*LPMSHGSWKMFPKVILHNTLSQ-----------SFSSVRLKRMEWIFMNCWI 824
>TC226825 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydratase, small
subunit, partial (71%)
Length = 1121
Score = 26.9 bits (58), Expect = 8.4
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +1
Query: 114 IDQTEHNKEVILNTAKRLYGSHRGKLH 140
+DQ+ H K V L T +R S RG+ H
Sbjct: 628 LDQSHHRKGVSLETDRRRGSSDRGRWH 708
>TC210263 weakly similar to GB|AAO39920.1|28372876|BT003692 At1g61220
{Arabidopsis thaliana;} , partial (58%)
Length = 759
Score = 26.9 bits (58), Expect = 8.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 158 DEISEEDWEHLVDKFSSPTYKEMSARNKANKSKQVINH 195
DE+ E +H++ + P+ K M+ N+AN +++ +
Sbjct: 525 DEVKELSPKHIIRYRALPSTKPMTTANRANHQDKIVGY 412
>TC220755
Length = 784
Score = 26.9 bits (58), Expect = 8.4
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 72 KDHILSQVFVNIII*FIFLFSFVLIQYLQYI-SCNCWVQDTFDIDQTEHNKEVILNTAKR 130
KD+ SQVF N+I F+ F+ + ++ + SC C + + + H+ +LNT+
Sbjct: 545 KDYA*SQVF-NVIY-FVLHGRFLQVCFI*ILCSCTC*REFPLETSKHVHSFNPLLNTSFV 718
Query: 131 LYGSHRGKLHEHFKKYETNE 150
Y S LH + + T E
Sbjct: 719 YYSSKSMILHSIYGRNSTVE 778
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,062,333
Number of Sequences: 63676
Number of extensions: 154805
Number of successful extensions: 895
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of query: 243
length of database: 12,639,632
effective HSP length: 95
effective length of query: 148
effective length of database: 6,590,412
effective search space: 975380976
effective search space used: 975380976
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0302a.10