TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0301a.2
         (80 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC217738 homologue to UP|YCF2_LOTJA (Q9B1K6) Protein ycf2, parti...    79  3e-16
TC206411 homologue to UP|Q6L372 (Q6L372) Cytochrome b6 , partial...    38  8e-04
TC215030                                                               31  0.13
TC216237 similar to UP|Q70WD8 (Q70WD8) RAC-ROP-like G-protein, p...    28  0.84
TC208435                                                               28  1.1
TC214143 UP|Q39832 (Q39832) Ribulose-1,5-bisphosphate carboxylas...    27  2.4
TC218490 similar to UP|Q9LDC1 (Q9LDC1) CRK1 protein, partial (7%)      27  2.4
TC211132 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase cata...    26  3.2

>TC217738 homologue to UP|YCF2_LOTJA (Q9B1K6) Protein ycf2, partial (13%)
          Length = 941

 Score = 79.3 bits (194), Expect = 3e-16
 Identities = 39/46 (84%), Positives = 41/46 (88%)
 Frame = +1

Query: 1   FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
           F LLIH QRWLR N+SLSNGFFRSNTLSESYQYLSN+FLSN  LLD
Sbjct: 700 FELLIHCQRWLRINSSLSNGFFRSNTLSESYQYLSNLFLSNEALLD 837


>TC206411 homologue to UP|Q6L372 (Q6L372) Cytochrome b6 , partial (95%)
          Length = 2549

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 21/32 (65%), Positives = 25/32 (77%)
 Frame = +3

Query: 44 LLDNTKMK*IIENSRGR*GSR*RQMSRLDILA 75
          ++ N KMK*I+E SRG   SR*R+ SRLDILA
Sbjct: 3  IIHNKKMK*IVEYSRGLKRSR*RRRSRLDILA 98


>TC215030 
          Length = 493

 Score = 30.8 bits (68), Expect = 0.13
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 25  NTLSESYQYLSNMFLSNGTLLDNTKMK*II 54
           +TLS +Y Y+S +F SNG  L  T+M  +I
Sbjct: 185 DTLSSTYMYISCIFFSNGAKLIQTRMPCVI 274


>TC216237 similar to UP|Q70WD8 (Q70WD8) RAC-ROP-like G-protein, partial (90%)
          Length = 1651

 Score = 28.1 bits (61), Expect = 0.84
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 6    HRQRWLRPNNSLSNGFFRSN 25
            H QR+ RP++SL+NGF + N
Sbjct: 1138 HYQRFSRPSSSLANGFIQIN 1197


>TC208435 
          Length = 740

 Score = 27.7 bits (60), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = -3

Query: 11  LRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLL 45
           +R    LSN  F+SNT      Y+ + FLSN  LL
Sbjct: 561 IRAGQILSNSLFKSNT------YVKHFFLSNAKLL 475


>TC214143 UP|Q39832 (Q39832) Ribulose-1,5-bisphosphate carboxylase small
           subunit precursor (Ribulose-1,5-bisphosphate carboxylase
           small subunit rbcS1), complete
          Length = 1249

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 27  LSESYQYLSNMFLS 40
           L ESYQY+SN+FLS
Sbjct: 715 LFESYQYVSNLFLS 756


>TC218490 similar to UP|Q9LDC1 (Q9LDC1) CRK1 protein, partial (7%)
          Length = 689

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 13/28 (46%), Positives = 18/28 (63%)
 Frame = -2

Query: 21  FFRSNTLSESYQYLSNMFLSNGTLLDNT 48
           FF + TL E  +YLS +FLS   +L+ T
Sbjct: 373 FFLNLTLQECTKYLSYVFLSFNLILEGT 290


>TC211132 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catalytic
           subunit, partial (19%)
          Length = 615

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 2   LLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNM 37
           LL  H + WLR  + L NGF  +  ++ +  +LS +
Sbjct: 405 LLC*HLKLWLRHQSLLGNGFLSARNIALNLGHLSGI 512


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.350    0.154    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,912,927
Number of Sequences: 63676
Number of extensions: 26606
Number of successful extensions: 341
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of query: 80
length of database: 12,639,632
effective HSP length: 56
effective length of query: 24
effective length of database: 9,073,776
effective search space: 217770624
effective search space used: 217770624
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 52 (24.6 bits)