BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0299.5
(547 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO979823 76 3e-14
TC213061 71 1e-12
BG404993 70 2e-12
TC231841 69 4e-12
BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevi... 69 5e-12
CA851073 67 2e-11
TC221865 65 6e-11
TC233392 64 1e-10
CO984521 63 4e-10
CO986021 62 9e-10
TC223713 59 6e-09
TC211809 56 8e-09
BG239687 58 1e-08
TC222557 45 8e-08
TC222789 55 1e-07
CF921567 54 1e-07
TC231922 54 2e-07
TC211008 53 4e-07
BE660043 53 4e-07
TC233956 51 1e-06
>CO979823
Length = 853
Score = 76.3 bits (186), Expect = 3e-14
Identities = 43/160 (26%), Positives = 73/160 (44%), Gaps = 4/160 (2%)
Frame = -2
Query: 190 QPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFT 249
Q QI RED W+WK G YS + Y + I+D +WKL++P K +F
Sbjct: 729 QQQIHPQREDKWLWKPEPGGHYSTKSGYHVLWGELTEEIQDADFAEIWKLKIPTKAAVFA 550
Query: 250 WQVLHNAIPV-NELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRN 308
W+++ + +P + L R + D C C N+ E H +C+ + LW W +
Sbjct: 549 WRLVRDRLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLW-------WES 391
Query: 309 FRYNNIISWFSSMARGVHGIQF---LAGVWGAWKWRCNWL 345
+ N+ + R H +Q+ +A + +W+C W+
Sbjct: 390 MSWVNLKTAMPQTPR-QHFLQYGTDIADGLKSKRWKCWWI 274
>TC213061
Length = 823
Score = 70.9 bits (172), Expect = 1e-12
Identities = 46/173 (26%), Positives = 71/173 (40%), Gaps = 5/173 (2%)
Frame = +2
Query: 198 EDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAI 257
ED W+W SSG Y R AY I +DR+ +WKL+VP K+ MF W++L + +
Sbjct: 125 EDQWVWAAESSGSYLARSAYRVIREGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDIL 304
Query: 258 PVNELWVRCHL-ASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIIS 316
P + R + + C C ++ E H CS +W W + + ++
Sbjct: 305 PTRDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKILPIW-------WESLSWVKLVG 463
Query: 317 WFSSMAR---GVHGIQFLAGVWG-AWKWRCNWLLDSQRWPIEVVWRRIAHDHD 365
F R H + G+ G WKW W + + W H +D
Sbjct: 464 AFPHHPRHHFHQHSHEVYQGLQGNRWKW----------WWLALTWTIWKHRND 592
>BG404993
Length = 412
Score = 70.5 bits (171), Expect = 2e-12
Identities = 35/107 (32%), Positives = 53/107 (48%), Gaps = 1/107 (0%)
Frame = -3
Query: 193 ICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQV 252
I + D+W WK SG YS + AYE + ED +WKL++P K +FTW++
Sbjct: 350 IQQHEADSWTWKADPSGNYSTKTAYELLQEAIRGDNEDGIFVQLWKLKIPPKAPVFTWRL 171
Query: 253 LHNAIPVN-ELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
+++ +P L R SD+ C C N ED H +C+ + W
Sbjct: 170 INDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFW 30
>TC231841
Length = 791
Score = 69.3 bits (168), Expect = 4e-12
Identities = 45/171 (26%), Positives = 74/171 (42%), Gaps = 9/171 (5%)
Frame = +3
Query: 189 VQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMF 248
+QPQ + D W+WK SG+Y+ + AY + +D +WKL++P KI +F
Sbjct: 45 IQPQ----QGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITIF 212
Query: 249 TWQVLHNAIPVNELWVRCHL-ASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWR 307
W+++ + +P R + D C C + E H CS R+ + W
Sbjct: 213 AWRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCS-------RIAPVWWE 371
Query: 308 NFRYNNIISWFSSMARGVHGIQFLAGVWGA-----WKW---RCNWLLDSQR 350
+ + N++ F + R H +Q + GV WKW W + QR
Sbjct: 372 SLSWVNLLGVFPNHPR-QHFLQHIYGVTAGMRASRWKWWWLALTWTIWKQR 521
>BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevipalpis},
partial (2%)
Length = 422
Score = 68.9 bits (167), Expect = 5e-12
Identities = 39/126 (30%), Positives = 58/126 (45%)
Frame = -2
Query: 241 VPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRR 300
+P+KIR+ W +LHN++ N +L + + C N ED LHCLRD + ++W
Sbjct: 421 IPKKIRIMFWLILHNSLSKNSTRFHRNLVNSSAFPHCSNPREDSLHCLRDFPHAKEIWLG 242
Query: 301 MGAINWRNFRYNNIISWFSSMARGVHGIQFLAGVWGAWKWRCNWLLDSQRWPIEVVWRRI 360
G + + S S G F VW KW N + D ++W I+ V + I
Sbjct: 241 FGFAPHLS-SLPLM*SGLKSQLNGSKVFLFTTIVWWV*KWGNNCIFDDEKWDIQRVVQSI 65
Query: 361 AHDHDD 366
HDD
Sbjct: 64 CFYHDD 47
>CA851073
Length = 633
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +1
Query: 192 QICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQ 251
QI + +D +WK G YS + AY + + E +WKL++P + +F+W+
Sbjct: 7 QIQSHLQDTMVWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSWR 186
Query: 252 VLHNAIPVNELWVRCHLA-SDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFR 310
++ + +P +R +++ + C CG E+ H +C + LW W + R
Sbjct: 187 LIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLW-------WESMR 345
Query: 311 YNNIISWFSSMARGVHGIQFLAGVWGAWKWRCNW 344
+N I+ S++ H +QF G +GA + W
Sbjct: 346 WNQIVGPL-SVSPASHFVQFCDG-FGAGRNHTRW 441
>TC221865
Length = 1045
Score = 65.5 bits (158), Expect = 6e-11
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Frame = -3
Query: 199 DAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIP 258
D W+WK +G YS R AY + H A D +WKL++P K +F +++ + +P
Sbjct: 668 DCWVWKSEPNGHYSTRSAYHLMQHEAAKANTDPAFEEIWKLKIPAKAAIFA*RLVKDRLP 489
Query: 259 V-NELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISW 317
N L R + C C N E+ H C+ + +W W + + N
Sbjct: 488 TKNNLRRRQVQLNGTLCLFCRNYEEEASHLFFSCTKTQPVW-------WESLSWINTSGA 330
Query: 318 FSSMARGVHGIQFLAGVWGAWKW---RCNWL 345
FS+ R H +Q G+ G ++ +C W+
Sbjct: 329 FSANPRH-HFLQHSFGLLGLKQYNR*KCWWV 240
>TC233392
Length = 1145
Score = 64.3 bits (155), Expect = 1e-10
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Frame = -1
Query: 181 SLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLR 240
S Q +Q Q+ D W+WK + YS R AY+ + +D L +WKL+
Sbjct: 698 STQNSHAQIQQQV----PDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLK 531
Query: 241 VPEKIRMFTWQVLHNAIPV-NELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLW- 298
+P K +F W+++ + +P + L R + D+ C C ED H +C+ LW
Sbjct: 530 IPAKASIFAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWW 351
Query: 299 ------RRMGA--INWRNFRYNNIISWFSSMARGVHGIQFLAGVWGAWKWR 341
R +G IN R ++ S ++A W WK R
Sbjct: 350 ESQTWVRSLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHR 198
>CO984521
Length = 716
Score = 62.8 bits (151), Expect = 4e-10
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = -2
Query: 183 QQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVP 242
Q + ++P++ D W W SG YS + AY+ ++H+ +D K +WKLRVP
Sbjct: 682 QLEGFTIRPEL----SDQWKWAAEPSGCYSTKSAYKALHHVTVGEEQDGKFKELWKLRVP 515
Query: 243 EKIRMFTWQVLHNAIPVN-ELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
K+ +F W+++ + +P L + + C C +V E H CS LW
Sbjct: 514 LKVAIFAWRLIQDKLPTKANLRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLW 344
>CO986021
Length = 900
Score = 61.6 bits (148), Expect = 9e-10
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Frame = -1
Query: 198 EDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNW--VWKLRVPEKIRMFTWQVLHN 255
+D+ +WK +G YS + AY + L +N N+ +WKL++P + +F+W++ +
Sbjct: 786 QDSMLWKADPTGIYSTKSAYRLL--LPNNRPGQHSSNFKILWKLKIPPRAELFSWRLFRD 613
Query: 256 AIPVNELWVRCHLA-SDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNI 314
+ + +R H+A D C CGN E+ H C + LW W + +
Sbjct: 612 RLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLW-------WESMNWTRT 454
Query: 315 ISWFSSMARGVHGIQFLAGVWGAWK---WRCNW 344
+ F H IQF G +GA + RC W
Sbjct: 453 LGAFLD-DPAAHFIQFSDG-FGAQRNHNRRCLW 361
>TC223713
Length = 420
Score = 58.9 bits (141), Expect = 6e-09
Identities = 39/145 (26%), Positives = 65/145 (43%), Gaps = 4/145 (2%)
Frame = +1
Query: 202 IWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVN- 260
+W+ SG+Y+ + AY + + I+DR + KL+VP K +F W++L + +P
Sbjct: 7 VWEADQSGQYTAQTAYNLMREVEVGGIQDRAFEEL*KLKVPIKFAVFAWRLLRDRLPTKA 186
Query: 261 ELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSS 320
L R ++ +C C N+ E+ H CS +W W + NI F
Sbjct: 187 NLHRRQIEVTNRSCPFCSNMEEEAGHLFFHCSKIIPIW-------WETSSWVNISGPFPK 345
Query: 321 MARG---VHGIQFLAGVWGAWKWRC 342
R HG+ + GV +W+C
Sbjct: 346 DPRQHFLQHGLLLVEGV-RTTRWKC 417
>TC211809
Length = 895
Score = 56.2 bits (134), Expect(2) = 8e-09
Identities = 45/182 (24%), Positives = 75/182 (40%), Gaps = 8/182 (4%)
Frame = +2
Query: 209 GRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPV-NELWVRCH 267
G YS + AY + DR +W L++P K +F W+++ + +P L VR
Sbjct: 200 GNYSTKSAYRLLMEATGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNLRVRQV 379
Query: 268 LASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGVHG 327
+D+ C C + ED H C+ + LW W + N + F + H
Sbjct: 380 ELNDSRCPLCNSSEEDAAHLFFHCTKTEXLW-------WETQSWVNSLGAFPHNPKD-HF 535
Query: 328 IQF---LAGVWGAWKWRCNWLLDSQRWPIEVVWRR----IAHDHDDWAWCAPSNDLLLCH 380
+Q AG A +W+C W+ + W V+W+ + H+H + +LL
Sbjct: 536 LQHDNRSAGGVXARRWKCLWV--ALTW---VIWKHRNGVVFHNHSFDGSKVMEDAILLTW 700
Query: 381 PW 382
W
Sbjct: 701 SW 706
Score = 21.9 bits (45), Expect(2) = 8e-09
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 190 QPQICMNREDAWIWKDGS 207
Q I +R D W+WK S
Sbjct: 142 QVTIHQDRPDVWVWKADS 195
>BG239687
Length = 443
Score = 57.8 bits (138), Expect = 1e-08
Identities = 26/66 (39%), Positives = 34/66 (51%)
Frame = -3
Query: 196 NREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHN 255
N ED+W+WK SG Y+VRDAY I H L VWK +P + F+W +L +
Sbjct: 237 NEEDSWVWKSNESGGYNVRDAYMLILHDGLVDEHANILKQVWKASIPSNVAAFSWSLLQD 58
Query: 256 AIPVNE 261
I E
Sbjct: 57 RIQTKE 40
>TC222557
Length = 1002
Score = 45.4 bits (106), Expect(2) = 8e-08
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Frame = +1
Query: 230 DRKLNWVWKLRVPEKIRMFTWQVLHNAIPV-NELWVRCHLASDATCARCGNVVEDGLHCL 288
D L +W+L++P K F W+++ IP LW R ++ C C E+ H
Sbjct: 421 DEALEDLWQLKIPLKATTFAWRLIKERIPTKGNLWRRRVQLNNLMCPFCNRQEEEASHLF 600
Query: 289 RDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGVHGIQFL--AGVWGAWKWRCNWLL 346
+C LW W + + + FS + R + L G +W+C W+
Sbjct: 601 FNCPRILPLW-------WESLAWTKTVGVFSPIPRQNYMQHTLISKGKHLQARWKCWWV- 756
Query: 347 DSQRWPIEVVWR 358
+ W I WR
Sbjct: 757 -ALTWSI---WR 780
Score = 29.3 bits (64), Expect(2) = 8e-08
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +3
Query: 199 DAWIWKDGSSGRYSVRDAYEWI 220
D W+WK +G++S R AY +
Sbjct: 330 DCWVWKPEPNGQFSTRSAYRML 395
>TC222789
Length = 954
Score = 54.7 bits (130), Expect = 1e-07
Identities = 37/122 (30%), Positives = 54/122 (43%), Gaps = 4/122 (3%)
Frame = +2
Query: 228 IEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVN-ELWVRCHLASDATCARCGNVVEDGLH 286
I+D+ +WKL+VP K +F W++L + +P L R D +C C NV ED H
Sbjct: 338 IKDKAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMDRSCPFCRNVEEDAGH 517
Query: 287 CLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGVHGIQ---FLAGVWGAWKWRCN 343
CS +W W + + NI R H +Q +AG +W+C
Sbjct: 518 LFFHCSKIIPIW-------WESLSWVNISGALPKDPR-QHFLQHDLIMAGGIRTTRWKCW 673
Query: 344 WL 345
WL
Sbjct: 674 WL 679
>CF921567
Length = 686
Score = 54.3 bits (129), Expect = 1e-07
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = -1
Query: 208 SGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCH 267
+G YS + AY+ + + IEDR LN +W L++P + F+W++ N +P E R
Sbjct: 677 NGLYSTKSAYKVL*EGHASAIEDRVLNIMWSLKIPPRASAFSWRLFKNRLPTRENLKRRQ 498
Query: 268 LASDA-TCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGVH 326
++ +C C E H +CS + LW W R+ N + F + + H
Sbjct: 497 VSLHTYSCPLCDLEEESVNHLFFNCSKTRSLW-------WEPLRWVNRVGPFPTDPKN-H 342
Query: 327 GIQF 330
+QF
Sbjct: 341 FLQF 330
>TC231922
Length = 803
Score = 53.9 bits (128), Expect = 2e-07
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 16/232 (6%)
Frame = -3
Query: 118 IDQRFEFRIGKGDTSVWYQD-WSGIGIIANQIPFVHISDV----NLTLCDLIQ------- 165
I Q +R+G GD ++QD W G Q + + + NLT+ + +
Sbjct: 723 IHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQ-KYNQLYTISRQ*NLTISKMGKFSQNARS 547
Query: 166 -DNKWNLQRLYTNLPHSLQQQFLAVQPQICMNRE--DAWIWKDGSSGRYSVRDAYEWINH 222
+ KW +RL+ + +++ F+ I + + D+ WK SSG YS + AY +
Sbjct: 546 WEFKWR-RRLF-DYEYAMAVDFMNEISGISIQNQAHDSMFWKADSSGVYSTKSAYRLLMP 373
Query: 223 LAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPV-NELWVRCHLASDATCARCGNVV 281
R +W L++P + +F+W++ + +P L R D C CG
Sbjct: 372 SISPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQH 193
Query: 282 EDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGVHGIQFLAG 333
E+ H C + LW W + R+ +I + H IQF G
Sbjct: 192 EEAGHLFFHCKMTKGLW-------WESMRWIRVIGALPADPAS-HFIQFCDG 61
>TC211008
Length = 516
Score = 52.8 bits (125), Expect = 4e-07
Identities = 39/138 (28%), Positives = 65/138 (46%), Gaps = 4/138 (2%)
Frame = +1
Query: 382 WSPPPPDTVKCNSDGSFREDVQR--MGGV--GVIRDHQGRWVAGCYLGEAAGNAFRAEAK 437
W P V N+DGS E+ + G G++RD G ++ G + + AE
Sbjct: 64 WRCPXNGWVCLNTDGSVFENHRNGCSGSACGGLVRDSSGCYLGGFTVNLGNTSVTLAELW 243
Query: 438 ALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRI 497
++ L+LAW+ G ++ D++ N + LV V F ++ I +L+ ++W V
Sbjct: 244 GVVHGLKLAWDLGCKKVKVDIDSGNALG-LVRHGPVANDPAFALVSEINELVRKEWLVEF 420
Query: 498 NSVHRDSNAVADHLVRRG 515
+ V R+SN AD L G
Sbjct: 421 SHVFRESNRAADKLAHLG 474
>BE660043
Length = 714
Score = 52.8 bits (125), Expect = 4e-07
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = -2
Query: 199 DAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIP 258
D+W+WK S+G YS R+AY + + D +WKL++P K +F +++ + +P
Sbjct: 626 DSWVWKPESNGYYSSRNAYILLQGNSEEGNMDDIFKDLWKLKIPAKASIFAGRLIRDRLP 447
Query: 259 VNELWVRCHL-ASDATCARCGNVVEDGLHCLRDCS 292
+ + +D+ C C E H DCS
Sbjct: 446 TKSNMRKRQIDINDSLCPFCSIKEETASHLFFDCS 342
>TC233956
Length = 757
Score = 51.2 bits (121), Expect = 1e-06
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = +2
Query: 196 NREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHN 255
N D W+W+ S+G S + AY+ I + + +W+++VP K F W++L +
Sbjct: 50 NFNDTWVWRAESTGIISTKSAYQVIKSELDDEGQHLGFKKLWEIKVPPKALSFVWRLLWD 229
Query: 256 AIPVNELWVRCHL-ASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
+P + ++ + D C C + E H C LW
Sbjct: 230 RLPTKDNLIKRQIQVEDDLCPFCHSQSETASHLFFTCGKIMPLW 361
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.332 0.143 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,764,761
Number of Sequences: 63676
Number of extensions: 643733
Number of successful extensions: 4403
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 4257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4370
length of query: 547
length of database: 12,639,632
effective HSP length: 102
effective length of query: 445
effective length of database: 6,144,680
effective search space: 2734382600
effective search space used: 2734382600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0299.5