BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0299.13
(259 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225340 similar to UP|Q9SPI1 (Q9SPI1) Splicing factor SR1, part... 344 3e-95
TC205672 similar to UP|Q9SCL3 (Q9SCL3) PRE-MRNA SPLICING FACTOR ... 297 3e-81
TC210550 similar to UP|Q9V3W7 (Q9V3W7) CG6987-PA (SR family spli... 198 1e-51
TC205674 similar to UP|SFR4_HUMAN (Q08170) Splicing factor, argi... 152 2e-37
TC225341 similar to GB|AAB71386.1|2443473|AF001035 ASF/SF2 homol... 87 4e-31
BU550626 similar to PIR|S71185|S71 splicing factor SF-2 homolog ... 110 5e-25
TC205673 similar to GB|AAB71386.1|2443473|AF001035 ASF/SF2 homol... 75 1e-20
AW396924 67 1e-16
TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like prot... 75 4e-14
TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 71 6e-13
TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, pa... 65 3e-11
BQ473702 60 8e-10
TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 59 2e-09
TC206362 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like prot... 59 2e-09
TC214211 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like prot... 59 3e-09
TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprot... 55 2e-08
TC227813 similar to UP|Q7XXQ1 (Q7XXQ1) Pre-mRNA splicing factor ... 55 4e-08
TC222223 similar to UP|Q8LKG6 (Q8LKG6) Cleavage stimulation fact... 52 2e-07
TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/ma... 51 6e-07
BU964843 weakly similar to GP|21553602|gb| glycine-rich RNA-bind... 51 6e-07
>TC225340 similar to UP|Q9SPI1 (Q9SPI1) Splicing factor SR1, partial (81%)
Length = 1349
Score = 344 bits (882), Expect = 3e-95
Identities = 180/249 (72%), Positives = 199/249 (79%), Gaps = 10/249 (4%)
Frame = +1
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS RSSRT+YVGNLPGDIR REVED+F K+G I IDLK+PPRPPGYAFV+FEDA+DAED
Sbjct: 142 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAED 321
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AI RDGYDFDG RLRVE AHGGRG SSS DR++S+S G RG SRRS+YRVLVTGLP
Sbjct: 322 AIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRHNSHSNGRGGRGVSRRSEYRVLVTGLPS 501
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFSQVF + G TGIVDYTNYDDMKYA++KLDDSEFRNAFS+
Sbjct: 502 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKG 681
Query: 181 YIRVREYD--RDYSRS----PSRDSRRSYSRSISRSPYLSRSRSRSRSYSG----RSISL 230
Y+RVREYD RD SRS PS RSYSRS SRS SR RS+S+S G RS +
Sbjct: 682 YVRVREYDSRRDSSRSPSHGPSHSRGRSYSRSRSRSHSYSRDRSQSKSPKGKSSQRSPAK 861
Query: 231 SPTAKRSRR 239
SP K S+R
Sbjct: 862 SPKGKSSQR 888
>TC205672 similar to UP|Q9SCL3 (Q9SCL3) PRE-MRNA SPLICING FACTOR SF2-like
protein, partial (73%)
Length = 1155
Score = 297 bits (761), Expect = 3e-81
Identities = 167/267 (62%), Positives = 193/267 (71%), Gaps = 14/267 (5%)
Frame = +2
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLP DIR E+ED+FYK+G I+DI+LK+PPRPP Y FV+F++ARDAED
Sbjct: 128 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAED 307
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDR-YSSYSGGSSSRGA---------SRRSD 110
AI RDGY+FDG RLRVELAHGGRG SSS R Y GG G+ SR S+
Sbjct: 308 AIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGSGAGGGRFGISRHSE 487
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RV+V GLP SASWQDLKDHMRKAGDVCF++V R+ G GIVDYTNYDDMKYA+RKLDD
Sbjct: 488 FRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDD 667
Query: 171 SEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISL 230
+EFRN ++RAYIRVR+Y+ SRS SR RS S RS L RS SRSRS RS S+
Sbjct: 668 TEFRNPWARAYIRVRKYESSRSRSHSRSPSRSRSPKRVRSRSLERSVSRSRS---RSRSV 838
Query: 231 SPTAKRSRRLLSLSRCG----LLRGSG 253
SP +S R S SR G +L GSG
Sbjct: 839 SPI--KSSRPRSRSRSGSPRQVLSGSG 913
>TC210550 similar to UP|Q9V3W7 (Q9V3W7) CG6987-PA (SR family splicing factor
SF2) (LD40489p), partial (11%)
Length = 421
Score = 198 bits (504), Expect(2) = 1e-51
Identities = 102/122 (83%), Positives = 108/122 (87%), Gaps = 4/122 (3%)
Frame = +2
Query: 128 KDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRVREY 187
KDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYA+RKLDDSEFRNAFSRA+IRVREY
Sbjct: 26 KDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAFIRVREY 205
Query: 188 DRDYSRSPSRDSRRSYSRSISRSPYLSR----SRSRSRSYSGRSISLSPTAKRSRRLLSL 243
DR YSRSPSRDSRRSYSRS+SRSP +SR SRSRS SYS RS S SP K S+R +SL
Sbjct: 206 DRGYSRSPSRDSRRSYSRSLSRSPCISRSRSHSRSRSHSYSDRSRSWSPKPKHSQRSISL 385
Query: 244 SR 245
SR
Sbjct: 386 SR 391
Score = 22.3 bits (46), Expect(2) = 1e-51
Identities = 8/9 (88%), Positives = 9/9 (99%)
Frame = +1
Query: 120 PSASWQDLK 128
PSASWQDL+
Sbjct: 1 PSASWQDLE 27
>TC205674 similar to UP|SFR4_HUMAN (Q08170) Splicing factor,
arginine/serine-rich 4 (Pre-mRNA splicing factor SRP75)
(SRP001LB), partial (8%)
Length = 792
Score = 152 bits (383), Expect = 2e-37
Identities = 87/138 (63%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +1
Query: 118 LPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAF 177
LP SASWQDLKDHMRKAGDVCF++V R+ G GIVDYTNYDDMKYA+RKLDD+EFRN +
Sbjct: 1 LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPW 180
Query: 178 SRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYS-GRSISLSPTAKR 236
+RAYIRVR+Y+ SRS SR RS SR SRSP RSRS RS S RS S S + +
Sbjct: 181 ARAYIRVRKYESSRSRSRSRSPSRSPSR--SRSPKRVRSRSLERSVSRSRSRSQSASPIK 354
Query: 237 SRRLLSLSRCGLLRGSGN 254
S R S SR GSG+
Sbjct: 355 SSRPRSRSRSRSRSGSGS 408
>TC225341 similar to GB|AAB71386.1|2443473|AF001035 ASF/SF2 homolog
{Arabidopsis thaliana;} , partial (28%)
Length = 433
Score = 86.7 bits (213), Expect(2) = 4e-31
Identities = 45/70 (64%), Positives = 50/70 (71%), Gaps = 12/70 (17%)
Frame = +2
Query: 42 PRPPGYAFVQFEDARDAEDAIYYRDGYDFDGFRLR------------VELAHGGRGSSSS 89
P PPGYAFV+FEDA+DAEDAI RDGYDFDG RLR VE AHGGRG SSS
Sbjct: 215 PTPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVGYILQLHALI*VEPAHGGRGHSSS 394
Query: 90 VDRYSSYSGG 99
DR++S+S G
Sbjct: 395 KDRHNSHSNG 424
Score = 65.5 bits (158), Expect(2) = 4e-31
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +1
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIP 41
MS RSSRT+YVGNLPGDIR RE ED+F K+G I IDLK+P
Sbjct: 94 MSRRSSRTVYVGNLPGDIREREAEDLFLKYGHITHIDLKVP 216
>BU550626 similar to PIR|S71185|S71 splicing factor SF-2 homolog -
Arabidopsis thaliana, partial (38%)
Length = 706
Score = 110 bits (276), Expect = 5e-25
Identities = 64/108 (59%), Positives = 73/108 (67%), Gaps = 10/108 (9%)
Frame = -1
Query: 142 VFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRVREYD--RDYSRS----P 195
VF + G TGIVDY NYDDMKYA++KLDD EFRNAFS+ Y+RVREYD RD SRS P
Sbjct: 706 VFHDGRGTTGIVDYXNYDDMKYAIKKLDDXEFRNAFSKGYVRVREYDSRRDSSRSPSHGP 527
Query: 196 SRDSRRSYSRSISRSPYLSRSRSRSRSYSG----RSISLSPTAKRSRR 239
S RSYSR SRS SR RS+S+S G RS + SP K S+R
Sbjct: 526 SHSRGRSYSRXXSRSHSYSRDRSQSKSPKGKSSQRSPAKSPKGKSSQR 383
Score = 33.1 bits (74), Expect = 0.13
Identities = 22/45 (48%), Positives = 26/45 (56%), Gaps = 1/45 (2%)
Frame = -1
Query: 178 SRAYIRVREYDRDYSRSPSRDSRRS-YSRSISRSPYLSRSRSRSR 221
SR+ R R R SRSP +S RS SRSP SRSRS+S+
Sbjct: 364 SRSPSRSRSRSRSRSRSPLPPRNKSPKKRSASRSPSRSRSRSKSK 230
>TC205673 similar to GB|AAB71386.1|2443473|AF001035 ASF/SF2 homolog
{Arabidopsis thaliana;} , partial (33%)
Length = 731
Score = 75.1 bits (183), Expect = 3e-14
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +2
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPP 45
MS R SRTIYVGNLP DIR E+ED+FYK+G I+DI+LK+PPRPP
Sbjct: 116 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPP 250
Score = 66.2 bits (160), Expect(2) = 1e-20
Identities = 48/90 (53%), Positives = 56/90 (61%), Gaps = 4/90 (4%)
Frame = +1
Query: 168 LDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRS 227
LDD+EFRN ++RAYIRVR+Y+ SRS SR RS S RS L RS SRSRS RS
Sbjct: 313 LDDTEFRNPWARAYIRVRKYESSRSRSHSRSPSRSRSPKRVRSRSLERSVSRSRS---RS 483
Query: 228 ISLSPTAKRSRRLLSLSRCG----LLRGSG 253
S+SP +S R S SR G +L GSG
Sbjct: 484 RSVSPI--KSSRPRSRSRSGSPRQVLSGSG 567
Score = 50.4 bits (119), Expect(2) = 1e-20
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 118 LPPSASWQDLKDHMRKAGDVCFSQ 141
LP SASWQDLKDHMRKAGDVCF++
Sbjct: 246 LPSSASWQDLKDHMRKAGDVCFAR 317
>AW396924
Length = 415
Score = 66.6 bits (161), Expect(2) = 1e-16
Identities = 42/71 (59%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Frame = +2
Query: 165 LRKLDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYS 224
+RKLDD+EFRN ++RAYIRVR+Y+ SRS SR RS SR SRSP RSRS RS S
Sbjct: 188 IRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSPSR--SRSPKRVRSRSLERSVS 361
Query: 225 ---GRSISLSP 232
RS S SP
Sbjct: 362 RSRSRSQSASP 394
Score = 37.0 bits (84), Expect(2) = 1e-16
Identities = 20/35 (57%), Positives = 21/35 (59%), Gaps = 9/35 (25%)
Frame = +1
Query: 148 GMTGIVDYTNYDDMKYAL---------RKLDDSEF 173
G GIVDYTNYDDMKYA+ RK DS F
Sbjct: 55 GTFGIVDYTNYDDMKYAVSSSFC*MIPRKPPDSSF 159
>TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like protein, partial
(62%)
Length = 1131
Score = 74.7 bits (182), Expect = 4e-14
Identities = 81/241 (33%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Frame = +1
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVG L R R++E +F ++G + +D+K +AFV+F D RDA+DA Y DG
Sbjct: 94 LYVGRLSSRTRSRDLERVFSRYGRVRGVDMK-----NDFAFVEFSDPRDADDARYNLDGR 258
Query: 69 DFDGFRLRVELAHGG-RGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPSASWQDL 127
D +G R+ VE A GG RGS R Y G G+ R + + W
Sbjct: 259 DVEGSRIIVEFAKGGPRGS-----RDREYMGRGPPPGSGRCFNCGI-------DGHWA-- 396
Query: 128 KDHMRKAGD---VCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRV 184
KAGD C+ R G G ++ + K + +KL S+ SR+ +R
Sbjct: 397 --RDCKAGDWKNKCY------RCGERGHIE----KNCKNSPKKL--SQRGRRLSRSPVRS 534
Query: 185 REYDRDYSRSPSRDSRRSYSRSIS-----RSPYLSRSRSRSRSYSG-RSISLSPTAKRSR 238
R R SR S SYSRS S RSP +S RS+SR S R S SP R
Sbjct: 535 RSPRRGRSRDRSYSRDHSYSRSRSPVRRERSP-VSEDRSQSREPSKIRKHSASPDQSSPR 711
Query: 239 R 239
+
Sbjct: 712 K 714
>TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
factor), partial (89%)
Length = 936
Score = 70.9 bits (172), Expect = 6e-13
Identities = 71/213 (33%), Positives = 88/213 (40%), Gaps = 3/213 (1%)
Frame = +2
Query: 2 SSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDA 61
SS +YVGNL + R++ED F FG I + + RPPGYAF+ F+D RDA+DA
Sbjct: 59 SSEKMSRVYVGNLDSRVTERDLEDEFRVFGVIRSV--WVARRPPGYAFIDFDDRRDAQDA 232
Query: 62 IYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPS 121
I DG + RVEL+H RG GG G S SD + G P
Sbjct: 233 IRELDGKN----GWRVELSHNSRG------------GGGGRGGRSGGSDLKCYECGEPGH 364
Query: 122 ASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAY 181
F++ R RGG + R+ S R S +Y
Sbjct: 365 -----------------FARECRMRGG---------------SGRRRSRSPPRFRRSPSY 448
Query: 182 IRVREYDRDYS---RSPSRDSRRSYSRSISRSP 211
R R YS RSP R S RS SRSP
Sbjct: 449 GR-----RSYSPRGRSPRRRSLSPRGRSYSRSP 532
>TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (69%)
Length = 1623
Score = 65.1 bits (157), Expect = 3e-11
Identities = 69/207 (33%), Positives = 92/207 (44%), Gaps = 4/207 (1%)
Frame = +2
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVG+L R R++E F ++G + +D+K +AFV F D RDA+DA Y DG
Sbjct: 50 LYVGHLSSRTRSRDLERAFSRYGRVRGVDMK-----NDFAFVDFSDPRDADDARYNLDGR 214
Query: 69 DFDGFRLRVELAHGG-RGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPSASWQDL 127
D DG R+ VE A G RGS + R G R GL W
Sbjct: 215 DVDGSRIIVEFAKGAPRGSREYLGRGPPPGSG------------RCFNCGL--DGHWA-- 346
Query: 128 KDHMRKAGD---VCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRV 184
KAGD C+ R G G ++ + K + +KL R ++SR+ +R
Sbjct: 347 --RDCKAGDWKNKCY------RCGERGHIE----RNCKNSPKKLSTRRGR-SYSRSPVRS 487
Query: 185 REYDRDYSRSPSRDSRRSYSRSISRSP 211
R SR S RSYSR SRSP
Sbjct: 488 HSPRRGRSRDRSYSRDRSYSR--SRSP 562
>BQ473702
Length = 403
Score = 60.5 bits (145), Expect = 8e-10
Identities = 31/67 (46%), Positives = 41/67 (60%)
Frame = +3
Query: 2 SSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDA 61
SS +YVGNL + R++ED F FG I + + RPPGYAF+ F+D RDA+DA
Sbjct: 21 SSEKMSRVYVGNLDSRVTERDLEDEFRVFGVIRSV--WVARRPPGYAFIDFDDRRDAQDA 194
Query: 62 IYYRDGY 68
I DG+
Sbjct: 195IRELDGF 215
>TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22
splicing factor), partial (72%)
Length = 1003
Score = 59.3 bits (142), Expect = 2e-09
Identities = 31/66 (46%), Positives = 40/66 (59%)
Frame = +3
Query: 2 SSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDA 61
SS +YVGNL + R++ED F FG I + + RPPGYAF+ F+D RDA+DA
Sbjct: 21 SSEKMSRVYVGNLDSRVTERDLEDEFRVFGVIRSV--WVARRPPGYAFIDFDDRRDAQDA 194
Query: 62 IYYRDG 67
I DG
Sbjct: 195IRELDG 212
>TC206362 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like protein, partial
(37%)
Length = 672
Score = 58.9 bits (141), Expect = 2e-09
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Frame = +3
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
+ + + ++ GNL D R +VE +F ++G + +D+K G+AFV ED RDAE
Sbjct: 108 LRKKKMKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMK-----SGFAFVYMEDERDAEY 272
Query: 61 AIYYRDGYDF--DGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGA--SRRSDYRVLVT 116
AI D +F G R+RVE + +R S SGG S + + SR S ++
Sbjct: 273 AIRRLDRTEFGRKGRRIRVEW--------TKQERDSRRSGGDSRKSSSNSRPSKTLFVIN 428
Query: 117 GLPPSASWQDLKDHMRKAGDV 137
P A +DL+ H G +
Sbjct: 429 FDPVHARTRDLERHFDSYGKI 491
Score = 34.3 bits (77), Expect = 0.058
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +3
Query: 160 DMKYALRKLDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRS--------ISRSP 211
D +YA+R+LD +EF R + + +RD SR DSR+S S S I+ P
Sbjct: 261 DAEYAIRRLDRTEFGRKGRRIRVEWTKQERD-SRRSGGDSRKSSSNSRPSKTLFVINFDP 437
Query: 212 YLSRSRSRSRSYSGRSISLSPTAKRS 237
+R+R R + L+ +R+
Sbjct: 438 VHARTRDLERHFDSYGKILNIRIRRN 515
>TC214211 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like protein, partial
(56%)
Length = 1619
Score = 58.5 bits (140), Expect = 3e-09
Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 3/200 (1%)
Frame = +2
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
M R I+ GN D R E+E +F ++G + +D+K G+AF+ ED RDAE
Sbjct: 95 MQQGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMK-----SGFAFIYMEDERDAEA 259
Query: 61 AIYYRDGYDF--DGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGL 118
AI D +F G RLRVE RG R + S SS+ G R S ++
Sbjct: 260 AIRALDRVEFGRKGRRLRVEWTKHERGV-----RKPASSRRSSANG--RPSKTLFVINFD 418
Query: 119 PPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRN-AF 177
+DL+ H G + ++ R V Y + DD AL + S+ +
Sbjct: 419 TYHTRTRDLERHFEPYGKIVSVRIRRN----FAFVQYESEDDASRALEATNMSKLLDRVI 586
Query: 178 SRAYIRVREYDRDYSRSPSR 197
S + + DR SP R
Sbjct: 587 SGEFAGKDDDDRRNGYSPER 646
>TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1403
Score = 55.5 bits (132), Expect = 2e-08
Identities = 45/168 (26%), Positives = 80/168 (46%), Gaps = 7/168 (4%)
Frame = +2
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDARDAEDAIYYR 65
++VGNLP ++ ++ ++F G + +++ K R G+ FV +AE A
Sbjct: 335 LFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQF 514
Query: 66 DGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPSASWQ 125
+GY+ DG LRV + + S R+ S S G S+ RV V+ L
Sbjct: 515 NGYELDGRALRVN-SGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNV 691
Query: 126 DLKDHMRKAGDVCFSQVFRER-GGMT---GIVDYTNYDDMKYALRKLD 169
LK R+ G+V ++V +R G + G V +++ D++ A++ L+
Sbjct: 692 ALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLN 835
>TC227813 similar to UP|Q7XXQ1 (Q7XXQ1) Pre-mRNA splicing factor (Fragment),
partial (77%)
Length = 1322
Score = 54.7 bits (130), Expect = 4e-08
Identities = 36/110 (32%), Positives = 54/110 (48%), Gaps = 3/110 (2%)
Frame = +2
Query: 5 SSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLK---IPPRPPGYAFVQFEDARDAEDA 61
S+ ++ V N+P D R E+ F +FGP+ D+ + P G+AFVQF D DA +A
Sbjct: 290 SNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEA 469
Query: 62 IYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDY 111
Y+ + F G + V +A R + +S G +S G R S Y
Sbjct: 470 QYHMNRQIFAGREISVVVAEETRKRPEEMRHRTSRFRGPASYGGRRSSHY 619
Score = 27.7 bits (60), Expect = 5.4
Identities = 19/29 (65%), Positives = 21/29 (71%), Gaps = 5/29 (17%)
Frame = +2
Query: 201 RSYSRSISRS---PYLS--RSRSRSRSYS 224
RS SRSI+RS PY S R+R RSRSYS
Sbjct: 623 RSRSRSITRSRSPPYHSGSRNRYRSRSYS 709
>TC222223 similar to UP|Q8LKG6 (Q8LKG6) Cleavage stimulation factor 64,
partial (22%)
Length = 445
Score = 52.4 bits (124), Expect = 2e-07
Identities = 28/88 (31%), Positives = 46/88 (51%), Gaps = 3/88 (3%)
Frame = +2
Query: 2 SSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPP---RPPGYAFVQFEDARDA 58
S R ++VGN+P D ++ +I + GP+V L I +P GY F +++D A
Sbjct: 143 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 322
Query: 59 EDAIYYRDGYDFDGFRLRVELAHGGRGS 86
A GY+ +G +LRV+ A +G+
Sbjct: 323 LSARRNLQGYEINGRQLRVDFAENDKGN 406
>TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/maf19_30
{Arabidopsis thaliana;} , partial (41%)
Length = 782
Score = 50.8 bits (120), Expect = 6e-07
Identities = 36/122 (29%), Positives = 55/122 (44%), Gaps = 11/122 (9%)
Frame = +2
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDARD 57
MSS S +++G + + + + F K+G +VD + + R G+ F+ + +
Sbjct: 155 MSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEE 334
Query: 58 AEDAIYYRDGYDFDGFRLRVELAH--------GGRGSSSSVDRYSSYSGGSSSRGASRRS 109
A AI DG D G +RV A+ GG GS +V Y GGSS RG
Sbjct: 335 ASSAIQALDGQDLHGRPIRVNYANERPRGYGGGGFGSYGAVGG-GGYEGGSSYRGGYGGD 511
Query: 110 DY 111
+Y
Sbjct: 512 NY 517
>BU964843 weakly similar to GP|21553602|gb| glycine-rich RNA-binding
protein-like {Arabidopsis thaliana}, partial (27%)
Length = 435
Score = 50.8 bits (120), Expect = 6e-07
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Frame = +1
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPG--YAFVQFEDARDA 58
M+ +IYVG LP D + +F +G I+D+ + PR G Y FV F + R A
Sbjct: 55 MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDPRTRGKCYCFVTFTNPRSA 234
Query: 59 EDAIYYRDGYDFDGFRLRVE--LAHGGRGSSSSVDRYSSYS---GGSSSRGASRRSDY 111
DAI +G DG ++V GGR S+ +RY ++ G R R DY
Sbjct: 235 IDAINDMNGRTIDGRVVKVNGVRTRGGR-SNFGRERYYYHNDERNGDWDRSRDRDRDY 405
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,424,607
Number of Sequences: 63676
Number of extensions: 138531
Number of successful extensions: 1923
Number of sequences better than 10.0: 202
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of query: 259
length of database: 12,639,632
effective HSP length: 95
effective length of query: 164
effective length of database: 6,590,412
effective search space: 1080827568
effective search space used: 1080827568
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0299.13