TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0299.12
         (418 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC224901 similar to UP|Q9M4C5 (Q9M4C5) VIP2 protein, partial (23%)    719  0.0
TC230693 homologue to UP|Q6HEM2 (Q6HEM2) Cytochrome c oxidase, s...   329  2e-90
TC230694                                                              141  5e-34
TC224992                                                               41  9e-04
BE612053 weakly similar to PIR|T51844|T518 RING-H2 finger protei...    39  0.003
TC234952 weakly similar to UP|Q8L6T7 (Q8L6T7) Ring-H2 zinc finge...    39  0.004
TC218510 similar to UP|Q9FYK6 (Q9FYK6) F21J9.24, partial (49%)         38  0.010
TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported...    37  0.013
TC210713 similar to UP|Q8S9I2 (Q8S9I2) At2g38970/T7F6.14, partia...    37  0.013
TC207001 similar to PIR|F86340|F86340 protein F2D10.34 [imported...    37  0.013
TC211151 UP|Q8LJR8 (Q8LJR8) RING-H2 finger protein, complete           37  0.013
TC218895 homologue to UP|Q8LJR8 (Q8LJR8) RING-H2 finger protein,...    37  0.013
TC213631 similar to PIR|F86340|F86340 protein F2D10.34 [imported...    37  0.013
TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A...    37  0.017
TC218509 similar to UP|Q6GKW2 (Q6GKW2) At1g24580, partial (41%)        37  0.022
TC220583                                                               36  0.028
TC209562 similar to UP|Q8GT74 (Q8GT74) NEP1-interacting protein ...    36  0.028
TC209499 similar to GB|AAR24751.1|38604016|BT010973 At5g01880 {A...    36  0.037
TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146...    36  0.037
TC228205 similar to UP|Q38820 (Q38820) Inner mitochondrial membr...    35  0.048

>TC224901 similar to UP|Q9M4C5 (Q9M4C5) VIP2 protein, partial (23%)
          Length = 1796

 Score =  719 bits (1856), Expect = 0.0
 Identities = 344/393 (87%), Positives = 358/393 (90%), Gaps = 10/393 (2%)
 Frame = +3

Query: 36  VVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGGRSYPEFN 95
           VVADNGDRSW+KL CGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANG RSYPEF+
Sbjct: 3   VVADNGDRSWSKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSYPEFS 182

Query: 96  MDDWTYDEDLYDLSYSELQSFGVHWCPFGNLARLPSPFD---------HDMLGQHAIFAE 146
           MD+WT+DEDLYDLSYSE+ SFGVHWCPFGNLARLPS F+         HD+LGQHAIFAE
Sbjct: 183 MDEWTHDEDLYDLSYSEM-SFGVHWCPFGNLARLPSSFEEGEFSSSAYHDVLGQHAIFAE 359

Query: 147 HTAVSSGSHHCPYIAYVGPIHPSSSNSGGTVSEASNFNHWNGSSVPNDMPASFTFPAVDL 206
           HTAVSS SH CPYIAY GPIHPSSSNSGGTVSEASNFNHWNGSSVP+DMP S+TFPAVDL
Sbjct: 360 HTAVSSASHPCPYIAYFGPIHPSSSNSGGTVSEASNFNHWNGSSVPSDMPTSYTFPAVDL 539

Query: 207 HYHGWEHHSPPFSTASSRLVAADQPSVSPGNQRPVRGGSDVPRSGSFMHPFLVGHSSAAR 266
           HYH WEHHSPPFSTASSRLVAADQPSVSPG+QRP RGGSDVPRSGSFMHPFLVGHSSAAR
Sbjct: 540 HYHSWEHHSPPFSTASSRLVAADQPSVSPGSQRPARGGSDVPRSGSFMHPFLVGHSSAAR 719

Query: 267 AGSSVASSLIPPYPGSNARARDRVQALQAYYQPQQPPNSTTMRTPIASGTRRPSIHGGSA 326
            GSSVASS+IPPYPGSNAR RDRVQALQAYYQPQQPPNSTTMRTPIASGTRR S H G A
Sbjct: 720 VGSSVASSMIPPYPGSNARTRDRVQALQAYYQPQQPPNSTTMRTPIASGTRRSSSHNGPA 899

Query: 327 PLAPVATSLDQSGGFFLIPPSSSGRNFQEEN-HLPSRYHAWERDHLPSLSLNHVDRDSGW 385
            LAP+ATS DQ GGFFLIP SSSGRNFQEEN HLP+ +HAWERDHLPSLSLNHVDRDSGW
Sbjct: 900 QLAPMATSPDQGGGFFLIPSSSSGRNFQEENHHLPNHFHAWERDHLPSLSLNHVDRDSGW 1079

Query: 386 RAYHQTFSRPDPATRSSSFRSRHGSDRMPSQNR 418
           RAYHQ  SR DPATRSSSFR RHGSDRMPSQNR
Sbjct: 1080RAYHQATSRSDPATRSSSFRLRHGSDRMPSQNR 1178


>TC230693 homologue to UP|Q6HEM2 (Q6HEM2) Cytochrome c oxidase, subunit III
           , partial (6%)
          Length = 630

 Score =  329 bits (843), Expect = 2e-90
 Identities = 161/207 (77%), Positives = 174/207 (83%), Gaps = 9/207 (4%)
 Frame = +2

Query: 128 RLPSPFD---------HDMLGQHAIFAEHTAVSSGSHHCPYIAYVGPIHPSSSNSGGTVS 178
           RLPS F+         HDMLGQ AIFAEHTAVSS SH CPYIAY GPIHPS+SNSG TVS
Sbjct: 2   RLPSSFEEGDFYSIAYHDMLGQQAIFAEHTAVSSASHACPYIAYFGPIHPSTSNSGLTVS 181

Query: 179 EASNFNHWNGSSVPNDMPASFTFPAVDLHYHGWEHHSPPFSTASSRLVAADQPSVSPGNQ 238
           EASNFNHWNG  VP DMP S+TFPAVDLHYH WEH+S  FS+A+SRL  ++Q SVSPG+Q
Sbjct: 182 EASNFNHWNGPPVPGDMPTSYTFPAVDLHYHSWEHNSSHFSSANSRLGTSEQTSVSPGSQ 361

Query: 239 RPVRGGSDVPRSGSFMHPFLVGHSSAARAGSSVASSLIPPYPGSNARARDRVQALQAYYQ 298
           RP RGGSDVPRSGSFMHPFLVGHSSAARAG+SVASS+IPPYPGSNARARDRVQALQAYYQ
Sbjct: 362 RPARGGSDVPRSGSFMHPFLVGHSSAARAGNSVASSMIPPYPGSNARARDRVQALQAYYQ 541

Query: 299 PQQPPNSTTMRTPIASGTRRPSIHGGS 325
           PQ P NS T+RTP+AS TRR S H GS
Sbjct: 542 PQLPHNSATIRTPVASSTRRSSSHSGS 622


>TC230694 
          Length = 709

 Score =  141 bits (356), Expect = 5e-34
 Identities = 69/95 (72%), Positives = 75/95 (78%)
 Frame = +1

Query: 324 GSAPLAPVATSLDQSGGFFLIPPSSSGRNFQEENHLPSRYHAWERDHLPSLSLNHVDRDS 383
           GS  LAPVA+S D+S GF  IP  SSG NFQEE HLPSR+HA ER+HLPSL LNHV R+S
Sbjct: 22  GSVQLAPVASSPDRSAGFVYIPSGSSGHNFQEETHLPSRFHAREREHLPSLPLNHVGRES 201

Query: 384 GWRAYHQTFSRPDPATRSSSFRSRHGSDRMPSQNR 418
            WRAYHQT S  DP+ RSSSFR RH SDRMPSQNR
Sbjct: 202 SWRAYHQTASVSDPSIRSSSFRLRHESDRMPSQNR 306


>TC224992 
          Length = 615

 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 19/30 (63%), Positives = 19/30 (63%)
 Frame = +1

Query: 389 HQTFSRPDPATRSSSFRSRHGSDRMPSQNR 418
           HQ  SR DP    SSFR RHG DR  SQNR
Sbjct: 1   HQATSRSDPGXXXSSFRLRHGXDRTXSQNR 90


>BE612053 weakly similar to PIR|T51844|T518 RING-H2 finger protein RHA3a
           [imported] - Arabidopsis thaliana, partial (25%)
          Length = 411

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +2

Query: 30  CSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEK 79
           C+ICL   +D GDR     +C H+FH+DCI     +     CP CR + K
Sbjct: 224 CAICLTEFSD-GDRIRFLPNCNHRFHVDCIDKW--LLSHSSCPTCRNLLK 364


>TC234952 weakly similar to UP|Q8L6T7 (Q8L6T7) Ring-H2 zinc finger protein,
           partial (14%)
          Length = 675

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 17/46 (36%), Positives = 28/46 (59%)
 Frame = +2

Query: 30  CSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCR 75
           CS+CL  +   G+++ +   C H++H+DCIG+   +K    CP CR
Sbjct: 176 CSVCLSQIC-KGEKAKSLPVCNHRYHVDCIGAW--LKNHTTCPLCR 304


>TC218510 similar to UP|Q9FYK6 (Q9FYK6) F21J9.24, partial (49%)
          Length = 796

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 18  DGGGGKGFGSVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGA-MQCPNCRK 76
           D GGG     V C +CL     N + S  +L C H FH  C+   F        CP CR 
Sbjct: 397 DIGGGTSVAMVECCVCLCRFEANQEVS--ELPCKHYFHRGCLDKWFEFDNKHSTCPLCRS 570

Query: 77  IE 78
           I+
Sbjct: 571 ID 576


>TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (65%)
          Length = 619

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 19/48 (39%), Positives = 26/48 (53%)
 Frame = +2

Query: 30  CSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKI 77
           C+ICL   A  GD       CGH FH+ CI +   ++    CP+CR+I
Sbjct: 311 CAICLTEFAA-GDEIRVLPQCGHGFHVSCIDAW--LRSHSSCPSCRQI 445


>TC210713 similar to UP|Q8S9I2 (Q8S9I2) At2g38970/T7F6.14, partial (30%)
          Length = 1029

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 29  SCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIK-GAMQCPNCR 75
           +CSICL  +      +     C H FH  CI S  N+K G   CP CR
Sbjct: 133 TCSICLTKMKQGSGHAIFTAECSHSFHFHCIAS--NVKHGNQICPVCR 270


>TC207001 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (54%)
          Length = 1074

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 18  DGGGGKGFGSVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKI 77
           D    K   +  C+ICL   A  GD       CGH FH+ CI +      +  CP+CR+I
Sbjct: 449 DSNPSKWVATSECAICLADFAA-GDEIRVLPQCGHGFHVPCIDTWLGSHSS--CPSCRQI 619


>TC211151 UP|Q8LJR8 (Q8LJR8) RING-H2 finger protein, complete
          Length = 1107

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 19/47 (40%), Positives = 24/47 (50%)
 Frame = +1

Query: 30  CSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRK 76
           CSICLE   D  +    +L CGH+FH  C+       G   CP CR+
Sbjct: 697 CSICLESFTDGDEL--IRLPCGHKFHSVCLDPWIRCCG--DCPYCRR 825


>TC218895 homologue to UP|Q8LJR8 (Q8LJR8) RING-H2 finger protein, partial
           (92%)
          Length = 1212

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 19/47 (40%), Positives = 24/47 (50%)
 Frame = +3

Query: 30  CSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRK 76
           CSICLE   D  +    +L CGH+FH  C+       G   CP CR+
Sbjct: 783 CSICLESFTDGDEL--IRLPCGHKFHSVCLDPWIRCCG--DCPYCRR 911


>TC213631 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (32%)
          Length = 589

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 19/48 (39%), Positives = 26/48 (53%)
 Frame = +3

Query: 30  CSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKI 77
           C+ICL   A  GD       CGH FH+ CI +   ++    CP+CR+I
Sbjct: 72  CAICLTEFAA-GDEIRVLPQCGHGFHVSCIDAW--LRSHSSCPSCRQI 206


>TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
           thaliana;} , partial (19%)
          Length = 582

 Score = 37.0 bits (84), Expect = 0.017
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = +3

Query: 1   MGLGNNEDEGNQEVDGGDGGGGKGFGSVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIG 60
           + L N+  E  Q+     G        ++CS+CLE V  N       L C HQFH +CI 
Sbjct: 60  VALRNHHIEEKQDNSNAVGSMKASDDDLTCSVCLEQV--NVGDVLRSLPCLHQFHANCID 233

Query: 61  SAFNIKGAMQCPNCR 75
                +G   CP C+
Sbjct: 234 PWLRQQGT--CPVCK 272


>TC218509 similar to UP|Q6GKW2 (Q6GKW2) At1g24580, partial (41%)
          Length = 671

 Score = 36.6 bits (83), Expect = 0.022
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +2

Query: 21  GGKGFGSVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIE 78
           GG     V C +CL     N + S  +L C H FH  C+   F+ K    CP CR I+
Sbjct: 353 GGTSMAMVECCVCLCRFEANQEVS--ELPCKHYFHRGCLDKWFDNKHT-TCPLCRSID 517


>TC220583 
          Length = 823

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
 Frame = +2

Query: 3   LGNNEDEGNQEVDGG-DGGGGKGFGSVS----------CSICLEVVADNGDRSWAKLHCG 51
           L NNE+  +Q+V+   D GG    G+            C ICL   AD  D    +L C 
Sbjct: 194 LKNNENGDDQDVNAAIDEGGILAAGTEKERMISGEDAVCCICLAKYAD--DDELRELPCS 367

Query: 52  HQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGG 88
           H FH+ C+     I     CP C K E G    +NGG
Sbjct: 368 HFFHVMCVDKWLKINAT--CPLC-KNEVGT---SNGG 460


>TC209562 similar to UP|Q8GT74 (Q8GT74) NEP1-interacting protein 2, partial
            (91%)
          Length = 1352

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 20/49 (40%), Positives = 26/49 (52%)
 Frame = +3

Query: 28   VSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRK 76
            VSCS+CL+     G+   +  HC H FHL CI       G+  CP CR+
Sbjct: 978  VSCSVCLQDFM-LGETVRSLPHCHHMFHLPCIDKWLFRHGS--CPLCRR 1115


>TC209499 similar to GB|AAR24751.1|38604016|BT010973 At5g01880 {Arabidopsis
           thaliana;} , partial (58%)
          Length = 1167

 Score = 35.8 bits (81), Expect = 0.037
 Identities = 20/59 (33%), Positives = 26/59 (43%)
 Frame = +3

Query: 17  GDGGGGKGFGSVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCR 75
           G  GG     +  C ICL    + GD+      C H FH+ CI +   +     CPNCR
Sbjct: 735 GAAGGENTIPATECPICLGEF-EKGDKVRMLPKCNHGFHVRCIDTW--LLSHSSCPNCR 902


>TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146cp
           {Saccharomyces cerevisiae;} , partial (5%)
          Length = 1276

 Score = 35.8 bits (81), Expect = 0.037
 Identities = 24/89 (26%), Positives = 45/89 (49%), Gaps = 1/89 (1%)
 Frame = +2

Query: 26  GSVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCR-KIEKGQWLY 84
           G + C+IC +V+A   + +  +L C H +H++CI    + + +  CP CR ++      Y
Sbjct: 509 GELVCAICKDVLAPRTEVN--QLPCSHLYHINCILPWLSARNS--CPLCRYELPTDDKDY 676

Query: 85  ANGGRSYPEFNMDDWTYDEDLYDLSYSEL 113
             G ++    N+       D+ D SYS++
Sbjct: 677 EEGKQNIDSRNVIHERQRIDVTDDSYSDV 763


>TC228205 similar to UP|Q38820 (Q38820) Inner mitochondrial membrane protein
           (Mitochondrial inner membrane translocase TM23-2) (Inner
           mitochondrial membrane protein; 26940-26374), partial
           (73%)
          Length = 528

 Score = 35.4 bits (80), Expect = 0.048
 Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
 Frame = +1

Query: 216 PPFSTASSRLVAAD-------QPSVSPGNQRPVRGGSDVPRSGSFMHPFLVGHSSAARAG 268
           PP ST+SSR  AA         PS       P    +  P S + ++P     SS A   
Sbjct: 172 PPRSTSSSRRPAASADPGARTSPSTPAAATSPALSVAPPPASSAALNP-----SSPATPP 336

Query: 269 SSVASSLIPPYPGSNARARDRVQALQAYYQPQQPPNSTTMRTPIASGT 316
           SS +++   P P + A       A  A + P     S   RTP  SGT
Sbjct: 337 SSASTASSTP-PATPAAPGATASASSASFTPASRAGSKQRRTPTTSGT 477


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,735,159
Number of Sequences: 63676
Number of extensions: 422227
Number of successful extensions: 3354
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 3136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3308
length of query: 418
length of database: 12,639,632
effective HSP length: 100
effective length of query: 318
effective length of database: 6,272,032
effective search space: 1994506176
effective search space used: 1994506176
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)