TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0290.7
         (47 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216850 homologue to UP|Q42793 (Q42793) Acetyl CoA carboxylase ...    77  2e-15
TC206087 similar to UP|Q38931 (Q38931) Rof1, partial (50%)             27  2.3
TC219121 similar to UP|Q9M9U3 (Q9M9U3) F6A14.17 protein (At1g187...    27  2.3
BM893387 weakly similar to PIR|A86321|A86 F6A14.17 protein - Ara...    27  2.3
TC219912 similar to UP|Q7XZU1 (Q7XZU1) SAC domain protein 4, par...    25  6.7
TC224446                                                               25  8.7
TC219122 similar to UP|Q9M9U3 (Q9M9U3) F6A14.17 protein (At1g187...    25  8.7

>TC216850 homologue to UP|Q42793 (Q42793) Acetyl CoA carboxylase  , complete
          Length = 7100

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 35/43 (81%), Positives = 37/43 (85%)
 Frame = +1

Query: 5    NPDYGFNPTGWEVQELGFKSKPNVWAYFSVKSGGGIHEFLDSQ 47
            +PD GF PT  +VQEL FKSKPNVWAYFSVKSGGGIHEF DSQ
Sbjct: 1321 DPDDGFKPTSGKVQELNFKSKPNVWAYFSVKSGGGIHEFSDSQ 1449


>TC206087 similar to UP|Q38931 (Q38931) Rof1, partial (50%)
          Length = 1183

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (56%)
 Frame = +3

Query: 1   VLIINPDYGFNPTGWEVQELGFKSKPNVWAYFSVK 35
           +LII P+Y F P+G   QEL     PN   Y+ V+
Sbjct: 237 LLIIQPEYAFGPSG-SSQELA-NVPPNSTVYYEVE 335


>TC219121 similar to UP|Q9M9U3 (Q9M9U3) F6A14.17 protein
           (At1g18720/F6A14_17), partial (82%)
          Length = 856

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 2   LIINPDYGFNPTGWEVQELGFKSK-PNVWAYFSVKSG 37
           L++NP YG  PT W       K      WA  S ++G
Sbjct: 652 LVLNPGYGSYPTNWRTSSNTKKGAIRKAWARLSNRAG 542


>BM893387 weakly similar to PIR|A86321|A86 F6A14.17 protein - Arabidopsis
           thaliana, partial (50%)
          Length = 399

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 2   LIINPDYGFNPTGWEVQELGFKSK-PNVWAYFSVKSG 37
           L++NP YG  PT W       K      WA  S ++G
Sbjct: 397 LVLNPGYGSYPTNWRTSSNTKKGAIRKAWARLSNRAG 287


>TC219912 similar to UP|Q7XZU1 (Q7XZU1) SAC domain protein 4, partial (24%)
          Length = 823

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 8   YGFNPTGWEVQELGFKSKPNV 28
           YG    G+++Q LGF   PN+
Sbjct: 702 YGLAALGYQLQALGFTETPNI 764


>TC224446 
          Length = 454

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 1  VLIINPDYGFNPTGWEVQELGFKSKPNVWAYFS 33
          V+I +  +GF  T W    L F   P+ +AYFS
Sbjct: 22 VIIFSLFFGFLFTLWLSGSLSFSLPPSKFAYFS 120


>TC219122 similar to UP|Q9M9U3 (Q9M9U3) F6A14.17 protein
           (At1g18720/F6A14_17), partial (39%)
          Length = 577

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 2   LIINPDYGFNPTGW 15
           L++NP YG  PT W
Sbjct: 347 LVLNPGYGSYPTNW 306


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,488,415
Number of Sequences: 63676
Number of extensions: 23891
Number of successful extensions: 109
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of query: 47
length of database: 12,639,632
effective HSP length: 23
effective length of query: 24
effective length of database: 11,175,084
effective search space: 268202016
effective search space used: 268202016
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)