BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0288.7
(1771 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 162 2e-39
CO982349 110 5e-24
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 70 1e-20
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 62 8e-18
TC231922 79 2e-14
AW757033 76 1e-13
TC231841 74 6e-13
TC221865 74 6e-13
TC213164 73 1e-12
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 73 1e-12
CA851073 73 1e-12
CO979823 68 4e-11
BG404993 66 2e-10
BE610670 65 2e-10
TC222557 65 2e-10
CO986021 65 3e-10
BQ453949 64 4e-10
BM891241 51 5e-10
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase... 64 8e-10
CO984521 63 1e-09
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase (Fragment)
, partial (59%)
Length = 1077
Score = 162 bits (409), Expect = 2e-39
Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 1/299 (0%)
Frame = +1
Query: 962 AFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATY 1021
A ++ + K + KVD K YD + W FL + F P W + VK A+
Sbjct: 19 ANEVIDEAKRSNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEECVKSASI 198
Query: 1022 KLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPP 1081
+ VNG ++ P RGLRQGDPL+P+LF + + L+ ++ +A + + + P
Sbjct: 199 SVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLVGANGVP 378
Query: 1082 LTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGL-IFGRSASNRVKRD 1140
++ L +ADD++ F EA + +I IL + S RIN AKS +FG +++ K++
Sbjct: 379 ISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVFG--VTDQWKQE 552
Query: 1141 ISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIK 1200
+N LH ++ P YLG+P +CH I + + KL WK ++ G+ LIK
Sbjct: 553 AANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGGRVTLIK 732
Query: 1201 AIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGM 1259
+++ +IP+Y + P++ + L + F W G + I W WEK+ L K+ GG+
Sbjct: 733 SVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPKERGGI 909
>CO982349
Length = 795
Score = 110 bits (275), Expect = 5e-24
Identities = 72/237 (30%), Positives = 119/237 (49%), Gaps = 3/237 (1%)
Frame = +3
Query: 1019 ATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPH 1078
A+ + VN + +P RGLRQGDPL+P LF + + L+ ++ +A + F +
Sbjct: 93 ASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFNSFLVGKN 272
Query: 1079 SPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKS--GLIFGRSASNR 1136
P++ L +ADD++ F EAT++ I IL + ASG +IN A+S G I+ +
Sbjct: 273 KEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGAIW---KPDH 443
Query: 1137 VKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSL-AWIEERVKEKLEGWKETLLNQAGK 1195
++ + L+ ++ P YLG+P I +C + I + + KL WK+ ++ G+
Sbjct: 444 WCKEAAEFLNCSMLSMPFSYLGIP-IEANPRCREI*DPIIRKCETKLARWKQRHISLGGR 620
Query: 1196 EVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTL 1252
LI AI+ A+P+Y + P L ++ F W G R I W WE + L
Sbjct: 621 VTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETVCL 791
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 69.7 bits (169), Expect(2) = 1e-20
Identities = 39/131 (29%), Positives = 70/131 (52%)
Frame = -2
Query: 1083 THLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDIS 1142
+H+ ADD ++F + T + ++I+ LY + GQ I+ KS + G R+ R IS
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSIPGQRL-RVIS 275
Query: 1143 NLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAI 1202
+LL D P Y G+P G+ L + +++K KL WK ++L+ G+ L+ ++
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 1203 IQAIPLYAMAM 1213
I + LY+ ++
Sbjct: 94 IHGMLLYSFSV 62
Score = 50.4 bits (119), Expect(2) = 1e-20
Identities = 30/99 (30%), Positives = 51/99 (51%)
Frame = -3
Query: 952 IQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTAR 1011
I+D V+ E ++L + +A+K+D+ K +D L+ FL L +G+ +
Sbjct: 834 IKDCTCVTSEVINMLDK--KVFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNW 661
Query: 1012 VLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLF 1050
+ ++ A + VNG + RG+RQGDPLSP L+
Sbjct: 660 IRVILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like protein
{Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 61.6 bits (148), Expect(2) = 8e-18
Identities = 35/106 (33%), Positives = 55/106 (51%)
Frame = -3
Query: 1020 TYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHS 1079
T L NG + +P G+RQ DP++PYLFVL + LS ++ +
Sbjct: 653 TMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKKL*RSIQVNRGG 474
Query: 1080 PPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKS 1125
++HL F DD +LF EA + + I L L++ +SG ++NV K+
Sbjct: 473 LLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKT 336
Score = 48.9 bits (115), Expect(2) = 8e-18
Identities = 25/83 (30%), Positives = 45/83 (54%)
Frame = -2
Query: 1129 FGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKET 1188
F ++ + V+ DIS+ L + D G+YLG+P H+ +I ++V ++ WK
Sbjct: 324 FSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSN 145
Query: 1189 LLNQAGKEVLIKAIIQAIPLYAM 1211
LL+ G+ L K ++ A+P + M
Sbjct: 144 LLSMVGRLTLTK*VV*ALPSHIM 76
>TC231922
Length = 803
Score = 78.6 bits (192), Expect = 2e-14
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 15/205 (7%)
Frame = -3
Query: 1330 WAVGGGLLIEVWGDNWLSSGEALIQPHNAP-------DMKVSEL--ISPHGEGWNSALVR 1380
W VG G I+ W D+WLS G L Q +N ++ +S++ S + W R
Sbjct: 705 WRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISRQ*NLTISKMGKFSQNARSWEFKWRR 526
Query: 1381 SLFQPELALKV----LQTPVSKLNQT-DVLFWPHTPKGDYTVSSGFEIARSNSIKPQALS 1435
LF E A+ V + +S NQ D +FW G Y+ S + + + P
Sbjct: 525 RLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKADSSGVYSTKSAYRL-----LMPSISP 361
Query: 1436 SRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRI-LPSGQCPVCCEAQ 1494
+ S I ++LW ++P + VF W+ + L + NL R+ I + CP+C
Sbjct: 360 APSRRIFQILWHL----KIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQH 193
Query: 1495 ETVEHMFFVCPWTRAVWFGSSLQWV 1519
E H+FF C T+ +W+ S++W+
Sbjct: 192 EEAGHLFFHCKMTKGLWW-ESMRWI 121
>AW757033
Length = 441
Score = 76.3 bits (186), Expect = 1e-13
Identities = 45/128 (35%), Positives = 73/128 (56%), Gaps = 1/128 (0%)
Frame = -2
Query: 1034 TPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLL 1093
+P RGLRQGDPL+P LF +A + L+ ++ +A F + P++ L +ADD++
Sbjct: 428 SPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYADDTIF 249
Query: 1094 FAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGR-SASNRVKRDISNLLHMAIWDS 1152
F EAT++ I IL + ASG +IN AKS FG S + +++ + ++ ++
Sbjct: 248 FGEATMENVRVIKTILRGFELASGLKINFAKSR--FGAISVPD*WRKEAAEFMNCSLLSL 75
Query: 1153 PGQYLGLP 1160
P YLG+P
Sbjct: 74 PFSYLGIP 51
>TC231841
Length = 791
Score = 73.9 bits (180), Expect = 6e-13
Identities = 50/175 (28%), Positives = 79/175 (44%), Gaps = 5/175 (2%)
Frame = +3
Query: 1401 QTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKV 1460
Q D W P G YT S + + + Q + ++ +WK +LP K+ +
Sbjct: 57 QGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQ---------DGVFEELWKLKLPSKITI 209
Query: 1461 FLWKASHNSLAVKYNLWRKRI-LPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWV 1519
F W+ + L + NL RK+I + +CP C A+E+ H+FF C VW+ SL WV
Sbjct: 210 FAWRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWW-ESLSWV 386
Query: 1520 VSPQGLGSFD----VWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFN 1570
LG F LQ I + T + ++ + W+IW+ RN +F+
Sbjct: 387 ---NLLGVFPNHPRQHFLQHIYGV-TAGMRASRWKWWWLALTWTIWKQRNNMIFS 539
>TC221865
Length = 1045
Score = 73.9 bits (180), Expect = 6e-13
Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 20/263 (7%)
Frame = -3
Query: 1328 IRWAVGGGLLIEVWGDNWLSSGEALIQPH------NAPDMKVSELISPHGEG---WNSAL 1378
I W VG G W D + GE L++ + + ++ + + H E W
Sbjct: 935 IVWKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWEWKFQW 756
Query: 1379 VRSLFQPELALKV------LQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQ 1432
R LF E+ + + P+ + + TD W P G Y+ S + + + + K
Sbjct: 755 RRPLFDNEVDTTIGFLEDISRFPIHR-HLTDCWVWKSEPNGHYSTRSAYHLMQHEAAKAN 579
Query: 1433 ALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQ-CPVCC 1491
+ + IWK ++P K +F + + L K NL R+++ +G C C
Sbjct: 578 T---------DPAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQVQLNGTLCLFCR 426
Query: 1492 EAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLGSFDV----WLLQKITALQTISLDFN 1547
+E H+FF C T+ VW+ SL W+ + G+F LQ L + +N
Sbjct: 425 NYEEEASHLFFSCTKTQPVWW-ESLSWINTS---GAFSANPRHHFLQHSFGLLGLK-QYN 261
Query: 1548 KDFSTLACILWSIWRGRNKAVFN 1570
+ + ++IW+ RN+ +F+
Sbjct: 260 R*KCWWVALTFTIWQHRNRTIFS 192
>TC213164
Length = 446
Score = 73.2 bits (178), Expect = 1e-12
Identities = 37/115 (32%), Positives = 62/115 (53%)
Frame = +3
Query: 847 GGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPES 906
G K+PGPDGLN F K W ++ + + EF++ N +AL+PKV P S
Sbjct: 69 GNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKRSNAFFLALIPKVHDP*S 248
Query: 907 VVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQE 961
+ +++PIS I K++++++ R K L +I Q+ F+ GR N+ ++ E
Sbjct: 249 LNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEGRHTLHNVVIANE 413
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase homolog
T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 72.8 bits (177), Expect = 1e-12
Identities = 41/134 (30%), Positives = 61/134 (44%), Gaps = 5/134 (3%)
Frame = +2
Query: 1224 LNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNP 1283
L SL F W G+ R I W +W+ + L K +GG+G ++ R N +L K W +
Sbjct: 41 LESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLGKWRWDLFYIQ 220
Query: 1284 EALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDF-----ISRYIRWAVGGGLLI 1338
+ W VL+S Y S G S W+ L+ + + R W VGGG I
Sbjct: 221 QEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKRETIWKVGGGDRI 400
Query: 1339 EVWGDNWLSSGEAL 1352
+ W D W ++ +L
Sbjct: 401 KFWEDLWTNTDLSL 442
>CA851073
Length = 633
Score = 72.8 bits (177), Expect = 1e-12
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 10/185 (5%)
Frame = +1
Query: 1403 DVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFL 1462
D + W P G Y+ S + I ++ H +++TIWK ++P + VF
Sbjct: 28 DTMVWKADPCGVYSTKSAYRIL---------MTCNRHVSEANIFKTIWKLKIPPRAAVFS 180
Query: 1463 WKASHNSLAVKYNLWRKRI-LPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQW--V 1519
W+ + L ++NL R+ + + +CP+C QE +H+FF C TR +W+ S++W +
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWW-ESMRWNQI 357
Query: 1520 VSPQGL--GSFDVWLLQKITALQTISLDFNKDFSTLACILW-----SIWRGRNKAVFNAI 1572
V P + S V A + T C W SIW+ RN +F
Sbjct: 358 VGPLSVSPASHFVQFCDGFGAGRN---------HTRWCGWWIALTSSIWKHRNLLIFQGN 510
Query: 1573 RPDPT 1577
+ +P+
Sbjct: 511 QFEPS 525
>CO979823
Length = 853
Score = 67.8 bits (164), Expect = 4e-11
Identities = 43/168 (25%), Positives = 69/168 (40%), Gaps = 1/168 (0%)
Frame = -2
Query: 1403 DVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFL 1462
D W P G Y+ SG+ + + I + + IWK ++P K VF
Sbjct: 702 DKWLWKPEPGGHYSTKSGYHVL---------WGELTEEIQDADFAEIWKLKIPTKAAVFA 550
Query: 1463 WKASHNSLAVKYNLWRKRILPSGQ-CPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVS 1521
W+ + L K NL R++++ CP+C +E H+FF C T +W+ S+ WV
Sbjct: 549 WRLVRDRLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLWW-ESMSWVNL 373
Query: 1522 PQGLGSFDVWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVF 1569
+ + L + + W+IW+ RNK VF
Sbjct: 372 KTAMPQTPRQHFLQYGTDIADGLKSKRWKCWWIALTWTIWQHRNKVVF 229
>BG404993
Length = 412
Score = 65.9 bits (159), Expect = 2e-10
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Frame = -3
Query: 1375 NSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQAL 1434
+ A + F E+ L +Q ++ D W P G+Y+ + +E+ +
Sbjct: 401 SEATTAAEFLEEIGLSTIQQ-----HEADSWTWKADPSGNYSTKTAYELLQE-------- 261
Query: 1435 SSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRI-LPSGQCPVCCEA 1493
+ R N + ++ +WK ++P K VF W+ ++ L K NL R+++ + CP+C +
Sbjct: 260 AIRGDN-EDGIFVQLWKLKIPPKAPVFTWRLINDRLPTKVNLRRRQVEISDSLCPLCNNS 84
Query: 1494 QETVEHMFFVCPWTRAVWFGSSLQWV 1519
+E H+FF C T W+ SL WV
Sbjct: 83 EEDAAHLFFNCNKTLPFWW-ESLSWV 9
>BE610670
Length = 368
Score = 65.5 bits (158), Expect = 2e-10
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Frame = -2
Query: 1399 LNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKV 1458
L+ D L W P G Y+ S + + + S + + + IW ++P +
Sbjct: 325 LSSLDSLIWRADPSGAYSTKSAYNLLKGEG---------SFDNEDSASKIIWNLKIPPRT 173
Query: 1459 KVFLWKASHNSLAVKYNLWRKRI-LPSGQCPVCCEAQETVEHMFFVCPWTRAVWF 1512
F W+ N L K NL R+++ LPS +CP+C +E V H+ F C TR++W+
Sbjct: 172 IAFSWRIFKNRLPTKANLRRRQVELPSYRCPLCDLEEENVGHIMFSCTRTRSLWW 8
>TC222557
Length = 1002
Score = 65.5 bits (158), Expect = 2e-10
Identities = 38/127 (29%), Positives = 59/127 (45%), Gaps = 6/127 (4%)
Frame = +1
Query: 1449 IWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRI-LPSGQCPVCCEAQETVEHMFFVCPWT 1507
+W+ ++P K F W+ + K NLWR+R+ L + CP C +E H+FF CP
Sbjct: 439 LWQLKIPLKATTFAWRLIKERIPTKGNLWRRRVQLNNLMCPFCNRQEEEASHLFFNCPRI 618
Query: 1508 RAVWFGSSLQWVVSPQGLGSFDVWLLQKITALQTISLDFNKDFST-----LACILWSIWR 1562
+W+ SL W + +G F + + +Q + K + WSIWR
Sbjct: 619 LPLWW-ESLAWT---KTVGVFSP--IPRQNYMQHTLISKGKHLQARWKCWWVALTWSIWR 780
Query: 1563 GRNKAVF 1569
RN+ VF
Sbjct: 781 HRNRIVF 801
>CO986021
Length = 900
Score = 65.1 bits (157), Expect = 3e-10
Identities = 44/178 (24%), Positives = 79/178 (43%), Gaps = 11/178 (6%)
Frame = -1
Query: 1403 DVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFL 1462
D + W P G Y+ S + + N+ Q S+ ++ +WK ++P + ++F
Sbjct: 783 DSMLWKADPTGIYSTKSAYRLLLPNNRPGQHSSN---------FKILWKLKIPPRAELFS 631
Query: 1463 WKASHNSLAVKYNLWRKRI-LPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVS 1521
W+ + L+++ NL R+ + L CP+C QE H+FF C T +W+ S+ W
Sbjct: 630 WRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWW-ESMNWT-- 460
Query: 1522 PQGLGSFDVWLLQKITALQTISLDFNKDFS-----TLACILW-----SIWRGRNKAVF 1569
+ LG+F + + F+ F C+ W +IW+ RN +F
Sbjct: 459 -RTLGAF-------LDDPAAHFIQFSDGFGAQRNHNRRCLWWIALTSTIWQHRNSLLF 310
>BQ453949
Length = 450
Score = 64.3 bits (155), Expect = 4e-10
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +3
Query: 1403 DVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFL 1462
D+L W G Y+ S + ++ S I + ++ IW +LP + F
Sbjct: 30 DLLLWGSNSDGSYSTKSAYNFLKNED---------SQTIEDSAFKNIWNLKLPPRACAFS 182
Query: 1463 WKASHNSLAVKYNLWRKRI-LPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSL 1516
+ N + K NL R+ + LPS CP+C E +ETV H+ + C TR +W+ + L
Sbjct: 183 *RIF*NRIPTKVNLRRRHVKLPSSNCPLCDEEEETVGHVMYSCIKTRHLWWETEL 347
>BM891241
Length = 407
Score = 50.8 bits (120), Expect(2) = 5e-10
Identities = 22/67 (32%), Positives = 36/67 (52%)
Frame = -2
Query: 1235 GQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSV 1294
G + I W WE + L K +GG+G ++ N+A+L K W + ++ + LW ++ S
Sbjct: 403 GDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINSK 224
Query: 1295 YFPTSDF 1301
Y SDF
Sbjct: 223 YGGWSDF 203
Score = 33.1 bits (74), Expect(2) = 5e-10
Identities = 17/52 (32%), Positives = 22/52 (41%), Gaps = 5/52 (9%)
Frame = -3
Query: 1311 SWMWRSLL-----AGRDFISRYIRWAVGGGLLIEVWGDNWLSSGEALIQPHN 1357
S+ WR L + +Y+ W VG G I W D WL L Q +N
Sbjct: 174 SYWWRDLRKFYHQSDHSIFHQYMSWKVGCGDKINFWTDKWLGEDYTLEQKYN 19
>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (15%)
Length = 376
Score = 63.5 bits (153), Expect = 8e-10
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = -2
Query: 839 IAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALV 898
I AV G +K+PGPDGLN F K+ W ++ + + EF + N + +AL+
Sbjct: 375 IKSAVWQCGSVKSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALI 196
Query: 899 PKVDSPESVVQFRPISCCNYILKVISRI 926
PKV P+++ FRPIS + K++++I
Sbjct: 195 PKVKHPQALNDFRPISLIGCVYKIVAKI 112
>CO984521
Length = 716
Score = 63.2 bits (152), Expect = 1e-09
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Frame = -2
Query: 1407 WPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKAS 1466
W P G Y+ S ++ ++ + ++ +WK ++P KV +F W+
Sbjct: 634 WAAEPSGCYSTKSAYKALHHVTVGEEQDGK---------FKELWKLRVPLKVAIFAWRLI 482
Query: 1467 HNSLAVKYNLWRKRI-LPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGL 1525
+ L K NL +KR+ L CP+C +ET H+FF C +W+ S WV +
Sbjct: 481 QDKLPTKANLRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWW-ESQSWV---NMM 314
Query: 1526 GSF----DVWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFN 1570
G F D Q I ++ L + + +SIW+ RN +F+
Sbjct: 313 GVFPYQPDQHFSQHIFG-ASVGLQGKRWQWWWFALTYSIWKHRNSIIFS 170
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.334 0.144 0.487
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,683,672
Number of Sequences: 63676
Number of extensions: 1451861
Number of successful extensions: 11741
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 11331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11689
length of query: 1771
length of database: 12,639,632
effective HSP length: 111
effective length of query: 1660
effective length of database: 5,571,596
effective search space: 9248849360
effective search space used: 9248849360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0288.7