BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0280a.7
(121 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231520 weakly similar to UP|Q8L821 (Q8L821) SET domain-contain... 52 4e-08
TC221711 weakly similar to UP|Q84XG3 (Q84XG3) SET domain protein... 37 0.002
TC231674 similar to UP|SUV6_ARATH (Q8VZ17) Histone-lysine N-meth... 35 0.004
CO979383 35 0.004
BM891849 34 0.011
TC231132 weakly similar to UP|Q93YF5 (Q93YF5) SET-domain-contain... 34 0.011
TC218322 similar to UP|SUV9_ARATH (Q9T0G7) Probable histone-lysi... 33 0.019
AW460164 28 0.78
BG316209 27 1.7
BI892693 26 2.3
TC226916 26 2.3
TC207060 similar to UP|Q8LKV5 (Q8LKV5) Steroleosin-B, partial (76%) 26 2.3
TC206503 similar to UP|O82062 (O82062) 39 kDa EF-Hand containing... 26 2.3
CA784477 26 3.0
TC229548 similar to UP|Q9SLT8 (Q9SLT8) ZCW7 protein, partial (55%) 26 3.0
BE807428 similar to GP|9758009|dbj selenium-binding protein-like... 26 3.0
CO979640 26 3.0
TC230697 similar to GB|AAF79264.1|8778255|AC023279 F12K21.25 {Ar... 25 5.1
BU549989 25 5.1
TC216670 weakly similar to UP|Q39364 (Q39364) Non-green plastid ... 25 5.1
>TC231520 weakly similar to UP|Q8L821 (Q8L821) SET domain-containing protein
SET118, partial (24%)
Length = 565
Score = 52.0 bits (123), Expect = 4e-08
Identities = 31/65 (47%), Positives = 39/65 (59%), Gaps = 2/65 (3%)
Frame = +1
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECG-- 80
NR SQ+ L+Y L+V+ KGWAV + DFI G PV EY L + ++ DSV E
Sbjct: 376 NRTSQRGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARAEDM--DSVLENNYI 549
Query: 81 FEIDC 85
FEIDC
Sbjct: 550 FEIDC 564
>TC221711 weakly similar to UP|Q84XG3 (Q84XG3) SET domain protein SDG117,
partial (12%)
Length = 1208
Score = 36.6 bits (83), Expect = 0.002
Identities = 18/43 (41%), Positives = 26/43 (59%)
Frame = +1
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
NR+ Q ++ L+V+ KGWAV + IL GT V EY+ E+
Sbjct: 46 NRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEV 174
>TC231674 similar to UP|SUV6_ARATH (Q8VZ17) Histone-lysine
N-methyltransferase, H3 lysine-9 specific 6 (Histone
H3-K9 methyltransferase 6) (H3-K9-HMTase 6) (Suppressor
of variegation 3-9 homolog 6) (Su(var)3-9 homolog 6) ,
partial (24%)
Length = 755
Score = 35.4 bits (80), Expect = 0.004
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +1
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVE 70
NR+SQ +++ L+++ ++GW V + + I G+ + EY+ EL ++ E
Sbjct: 133 NRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGELLEDKE 276
>CO979383
Length = 834
Score = 35.4 bits (80), Expect = 0.004
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = -3
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVE 70
NR+SQ +++ L+++ ++GW V + + I G+ + EY+ EL ++ E
Sbjct: 559 NRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGELLEDKE 416
>BM891849
Length = 421
Score = 33.9 bits (76), Expect = 0.011
Identities = 15/43 (34%), Positives = 26/43 (59%)
Frame = +3
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
NR+SQ L++ ++V+ +GW + + D I GT + EY E+
Sbjct: 240 NRVSQTGLKHQMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEV 368
>TC231132 weakly similar to UP|Q93YF5 (Q93YF5) SET-domain-containing protein,
partial (24%)
Length = 1134
Score = 33.9 bits (76), Expect = 0.011
Identities = 15/43 (34%), Positives = 26/43 (59%)
Frame = +2
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
NR+SQ L++ ++V+ +GW + + D I GT + EY E+
Sbjct: 146 NRVSQTGLKHPMEVFRTKDRGWGLRSLDPIRAGTFICEYAGEV 274
>TC218322 similar to UP|SUV9_ARATH (Q9T0G7) Probable histone-lysine
N-methyltransferase, H3 lysine-9 specific 9 (Histone
H3-K9 methyltransferase 9) (H3-K9-HMTase 9) (Suppressor
of variegation 3-9 homolog 9) (Su(var)3-9 homolog 9) ,
partial (26%)
Length = 810
Score = 33.1 bits (74), Expect = 0.019
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +1
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEY 61
NR++QK L+ L+V+ GW V + D I G + EY
Sbjct: 13 NRVTQKGLKNRLEVFRSRETGWGVRSMDLIQAGAFICEY 129
>AW460164
Length = 416
Score = 27.7 bits (60), Expect = 0.78
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 1/55 (1%)
Frame = -3
Query: 67 KNVELVIDSVSECGFEIDCLKIINEVEGRNRLLHNVS-LPASFCVERSVDDEETM 120
K+VEL D C F C IN+ G + H +S P F E V+D T+
Sbjct: 291 KDVELSTDGGW*CQFRHGCDVAINKETGSAVVFHQIS*FPTYFLGENHVED*PTL 127
>BG316209
Length = 422
Score = 26.6 bits (57), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = +3
Query: 59 LEYVKELRKNVELVIDSVSECGFEIDCL 86
LE++KEL + + DS++EC F + +
Sbjct: 147 LEHLKELSSKRKAIEDSINECNFVTEAI 230
>BI892693
Length = 422
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/37 (32%), Positives = 23/37 (61%)
Frame = +3
Query: 65 LRKNVELVIDSVSECGFEIDCLKIINEVEGRNRLLHN 101
LR + E +++ V+ G+E + I +++E NR LH+
Sbjct: 147 LRIDGEDLLEFVNGSGYEAEMNSIFSQIESPNRSLHD 257
>TC226916
Length = 1143
Score = 26.2 bits (56), Expect = 2.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Frame = +2
Query: 72 VIDSVSECGFEI-DCLKIINEVEGRNR--------LLHNVSLPASFCVERSV 114
V+ SVS+ F I +C+K ++E+EG ++ L N SL +F +SV
Sbjct: 785 VVSSVSDDKFSITNCIKALDEIEGIDQQLYFSALDLFENPSLRETFISLKSV 940
>TC207060 similar to UP|Q8LKV5 (Q8LKV5) Steroleosin-B, partial (76%)
Length = 1277
Score = 26.2 bits (56), Expect = 2.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +2
Query: 82 EIDCLKIINE---VEGR-NRLLHNVSLPASFCVERSVD 115
E DC + +NE V GR + L++ VSL +FC E D
Sbjct: 377 EEDCRRFVNETINVFGRVDHLVNTVSLGHTFCFEEVTD 490
>TC206503 similar to UP|O82062 (O82062) 39 kDa EF-Hand containing protein,
partial (94%)
Length = 1538
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/37 (32%), Positives = 23/37 (61%)
Frame = +3
Query: 65 LRKNVELVIDSVSECGFEIDCLKIINEVEGRNRLLHN 101
LR + E +++ V+ G+E + I +++E NR LH+
Sbjct: 510 LRIDGEDLLEFVNGSGYEAEMNSIFSQIESPNRSLHD 620
>CA784477
Length = 409
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 65 LRKNVELVIDSVSECGFEIDCLKIINEVEGRNRLLHN 101
LR + E +++ V+ G+E + + I +++E +R LH+
Sbjct: 147 LRIDGEDLLEFVNGSGYEAEMVSIFSQIESPDRSLHD 257
>TC229548 similar to UP|Q9SLT8 (Q9SLT8) ZCW7 protein, partial (55%)
Length = 1419
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/34 (32%), Positives = 17/34 (49%)
Frame = -2
Query: 73 IDSVSECGFEIDCLKIINEVEGRNRLLHNVSLPA 106
++ V EC + + + E EGR R+ V L A
Sbjct: 215 VEEVDECALHLPFVDWVGECEGRGRVHREVELHA 114
>BE807428 similar to GP|9758009|dbj selenium-binding protein-like
{Arabidopsis thaliana}, partial (12%)
Length = 425
Score = 25.8 bits (55), Expect = 3.0
Identities = 12/50 (24%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = +1
Query: 63 KELRKNVELVIDSVSECGFEIDCLKIINEVEGRNRLL----HNVSLPASF 108
K++++ +E++I + G+E D +++EVE ++ + H+ L A++
Sbjct: 25 KDIQRGLEILILECLKIGYEPDTSFVLHEVEEHHKKIFLFHHSAKLAATY 174
>CO979640
Length = 722
Score = 25.8 bits (55), Expect = 3.0
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +1
Query: 30 LQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFEIDCLKII 89
L C+ + K + +N R L +L L+K I S S C +
Sbjct: 169 LHKCISLK*KFPERKRINYRRHYLPEVKLLCLNHSLKK*QYFYIQSQSPCE*ITRKVWST 348
Query: 90 NEVEGRNRLLHNVSLPASFCV 110
VE +N+ LH++ P+ FC+
Sbjct: 349 TAVEKQNQKLHSLHCPSMFCM 411
>TC230697 similar to GB|AAF79264.1|8778255|AC023279 F12K21.25 {Arabidopsis
thaliana;} , partial (18%)
Length = 1103
Score = 25.0 bits (53), Expect = 5.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 9 VLMRAKLWLWT*FDNRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPV 58
+L A +WL T D+ ++ K YC +++ SK N+ + G+PV
Sbjct: 829 ILRIASIWLLTSCDDLLTLKSRMYC--GFVE*SKTHLTNSFPSVTGGSPV 686
>BU549989
Length = 620
Score = 25.0 bits (53), Expect = 5.1
Identities = 13/42 (30%), Positives = 20/42 (46%)
Frame = -1
Query: 43 GWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFEID 84
GW + TRD +L V L K ++ +S CGF ++
Sbjct: 146 GWVIKTRDSLL-----RVMVSYLEKRSSENLEIISSCGFFLE 36
>TC216670 weakly similar to UP|Q39364 (Q39364) Non-green plastid inner envelope
membrane protein precursor, partial (24%)
Length = 1453
Score = 25.0 bits (53), Expect = 5.1
Identities = 13/42 (30%), Positives = 20/42 (46%)
Frame = +2
Query: 43 GWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFEID 84
GW + TRD +L V L K ++ +S CGF ++
Sbjct: 1199 GWVIKTRDSLL-----RVMVSYLEKRSSENLEIISSCGFFLE 1309
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.337 0.148 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,419,455
Number of Sequences: 63676
Number of extensions: 62639
Number of successful extensions: 474
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of query: 121
length of database: 12,639,632
effective HSP length: 97
effective length of query: 24
effective length of database: 6,463,060
effective search space: 155113440
effective search space used: 155113440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0280a.7