Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0280a.5
         (151 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216193 wound-induced protein                                        191  1e-49
TC216194 similar to UP|Q6KF83 (Q6KF83) Pseudo-hevein (Fragment),...   188  1e-48
TC216192 similar to UP|Q6KF83 (Q6KF83) Pseudo-hevein (Fragment),...   187  2e-48
CA934966 similar to GP|3511147|gb| PR-4 type protein {Vitis vini...   186  3e-48
TC234014 similar to UP|PR4A_TOBAC (P29062) Pathogenesis-related ...   144  1e-46
TC231489 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F1...    30  0.34
TC207965 homologue to UP|DAPA_SOYBN (Q42800) Dihydrodipicolinate...    28  2.2
TC222196 weakly similar to UP|Q77MR7 (Q77MR7) UL45 (Envelope tra...    27  2.8
TC227797 similar to UP|Q8H1N8 (Q8H1N8) At1g20880/F9H16_14, parti...    27  3.7
TC224627 similar to UP|PSBY_ARATH (O49347) Photosystem II core c...    27  3.7
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat...    27  4.8
TC229673 similar to GB|AAM26654.1|20856224|AY101533 At1g14810/F1...    27  4.8
BI321673                                                               27  4.8
TC223929                                                               27  4.8
TC211300 UP|Q8CH69 (Q8CH69) Survival of motor neuron protein (Fr...    26  6.3
TC231556 similar to UP|Q8GUH2 (Q8GUH2) Expressed protein (At1g01...    26  6.3
TC231932 similar to GB|AAS75312.1|45680886|AY568529 multidomain ...    26  6.3
BE804852                                                               26  8.3
TC203370 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E336...    26  8.3
TC231423 similar to UP|Q9LID4 (Q9LID4) Similarity to disease res...    26  8.3

>TC216193 wound-induced protein
          Length = 741

 Score =  191 bits (484), Expect = 1e-49
 Identities = 82/122 (67%), Positives = 98/122 (80%)
 Frame = +1

Query: 30  GQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRD 89
           G+SA+NV ATY+ Y P+Q GW+L    AYC+TW+A+KP +WR KYGWTAFCGP G  GRD
Sbjct: 226 GESASNVRATYHYYEPEQHGWDLNAVSAYCSTWDASKPYSWRSKYGWTAFCGPVGPRGRD 405

Query: 90  SCGKCLRVRNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNGQGNHQGHLTVNYRFVN 149
           SCGKCLRV NT TG    VRIVDQC+NGGLDLDV VF R+D++G+G  QGHL VNY+FV+
Sbjct: 406 SCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVD 585

Query: 150 CG 151
           CG
Sbjct: 586 CG 591


>TC216194 similar to UP|Q6KF83 (Q6KF83) Pseudo-hevein (Fragment), partial
           (91%)
          Length = 694

 Score =  188 bits (477), Expect = 1e-48
 Identities = 82/122 (67%), Positives = 97/122 (79%)
 Frame = +2

Query: 30  GQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRD 89
           G+SA+NV ATY+ Y P+Q GW+L    AYC+TW+A KP +WR KYGWTAFCGP G  GRD
Sbjct: 146 GESASNVRATYHNYLPEQHGWDLNAVSAYCSTWDAAKPYSWRSKYGWTAFCGPVGPRGRD 325

Query: 90  SCGKCLRVRNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNGQGNHQGHLTVNYRFVN 149
           +CGKCLRV NT TG    VRIVDQC+NGGLDLDV VF R+D++G+G  QGHL VNY+FVN
Sbjct: 326 ACGKCLRVTNTGTGANIIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVN 505

Query: 150 CG 151
           CG
Sbjct: 506 CG 511


>TC216192 similar to UP|Q6KF83 (Q6KF83) Pseudo-hevein (Fragment), partial
           (85%)
          Length = 654

 Score =  187 bits (474), Expect = 2e-48
 Identities = 81/122 (66%), Positives = 97/122 (79%)
 Frame = +1

Query: 30  GQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRD 89
           G+SA+NV ATY+ Y P+Q GW+L    AYC+TW+A+KP +WR KYGWTAFCGP G  GRD
Sbjct: 118 GESASNVRATYHYYEPEQHGWDLNAVSAYCSTWDASKPYSWRSKYGWTAFCGPVGPRGRD 297

Query: 90  SCGKCLRVRNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNGQGNHQGHLTVNYRFVN 149
           SCGKCLRV NT TG    VRIVDQC+NGGLDLDV VF  +D++G+G  QGHL VNY+FV+
Sbjct: 298 SCGKCLRVINTGTGANTIVRIVDQCSNGGLDLDVGVFNWIDTDGRGYQQGHLIVNYQFVD 477

Query: 150 CG 151
           CG
Sbjct: 478 CG 483


>CA934966 similar to GP|3511147|gb| PR-4 type protein {Vitis vinifera},
           partial (88%)
          Length = 451

 Score =  186 bits (473), Expect = 3e-48
 Identities = 83/139 (59%), Positives = 104/139 (74%)
 Frame = +1

Query: 13  KLSIVAVWWLIAATFANGQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRK 72
           K+S+  V  +     A+ QSA NV ATY+LY P+Q  W+LL   AYC+TW+A+K LAWR 
Sbjct: 4   KVSLFVVCVVCILALASAQSATNVRATYHLYQPEQHNWDLLAVSAYCSTWDADKSLAWRS 183

Query: 73  KYGWTAFCGPAGAHGRDSCGKCLRVRNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSN 132
           KYGWTAFCGP+G  G+ SCG+CLRV NT T  + TVRIVDQC+NGGLDLD+  F++LD++
Sbjct: 184 KYGWTAFCGPSGPQGQQSCGRCLRVTNTRTNAQETVRIVDQCSNGGLDLDIGPFQKLDTD 363

Query: 133 GQGNHQGHLTVNYRFVNCG 151
           G G  QGHL VNY FV+CG
Sbjct: 364 GNGIAQGHLIVNYDFVDCG 420


>TC234014 similar to UP|PR4A_TOBAC (P29062) Pathogenesis-related protein
           PR-4A precursor, partial (78%)
          Length = 559

 Score =  144 bits (362), Expect(3) = 1e-46
 Identities = 65/96 (67%), Positives = 73/96 (75%), Gaps = 6/96 (6%)
 Frame = +2

Query: 19  VWWLIAAT------FANGQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRK 72
           VW ++  T        +G+SA NV ATY+LYNP+QIGWNL+TA AYCATW+ANKPLAWRK
Sbjct: 50  VWCVMMVTRRRTRVLVSGESAKNVRATYHLYNPEQIGWNLVTASAYCATWDANKPLAWRK 229

Query: 73  KYGWTAFCGPAGAHGRDSCGKCLRVRNTATGDEATV 108
           KY WTAFCGP G  G  SCGKCLRV NT TG EATV
Sbjct: 230 KYAWTAFCGPVGPRGXKSCGKCLRVTNTGTGTEATV 337



 Score = 40.0 bits (92), Expect(3) = 1e-46
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 127 RRLDSNGQGNHQGHLTVNYRF 147
           R+LD+NG GN QGHLT+NYRF
Sbjct: 394 RQLDTNGVGNQQGHLTLNYRF 456



 Score = 39.3 bits (90), Expect(3) = 1e-46
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 110 IVDQCANGGLDLDVNVF 126
           IVDQCANGGLDLDVNVF
Sbjct: 342 IVDQCANGGLDLDVNVF 392


>TC231489 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;} , partial (22%)
          Length = 634

 Score = 30.4 bits (67), Expect = 0.34
 Identities = 20/56 (35%), Positives = 25/56 (43%), Gaps = 1/56 (1%)
 Frame = -2

Query: 49  GWNLLTAGAYCATWNANKPLAWRKKYGWTAFCGP-AGAHGRDSCGKCLRVRNTATG 103
           GW L   GA+C++W    P A R    W   CG  AG   R S G C    +  +G
Sbjct: 486 GWLL---GAWCSSW*RRSPGAGRSCRRWPCSCGSGAGIPLRGSPGCCTAATSPWSG 328


>TC207965 homologue to UP|DAPA_SOYBN (Q42800) Dihydrodipicolinate synthase,
           chloroplast precursor  (DHDPS) , partial (98%)
          Length = 1291

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = +3

Query: 55  AGAYCATWNA----NKPLAWRKKYGWTAF----CGPAGAHGRDSCGKCLRVRNTA 101
           AG  C  WNA    +KPL W+   GW A     C   G H    C    R R+++
Sbjct: 516 AGFCC--WNACCPSHKPLLWQNLLGWYACSLSKCAFHGTHNNLQCACTDRSRHSS 674


>TC222196 weakly similar to UP|Q77MR7 (Q77MR7) UL45 (Envelope transmembrane
           protein), partial (11%)
          Length = 880

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 17/62 (27%), Positives = 25/62 (39%), Gaps = 5/62 (8%)
 Frame = +2

Query: 43  YNPQQIGWNLLTAGAYCAT-----WNANKPLAWRKKYGWTAFCGPAGAHGRDSCGKCLRV 97
           ++P+  G NL  + A  +T     W   + L     Y     C  A  HG  SC   +R 
Sbjct: 275 FHPRATGHNLGPSNAAHSTVVGLGWQRTRNLMSPSLYEGPCLCSRARIHGGSSCSSIMRR 454

Query: 98  RN 99
           R+
Sbjct: 455 RS 460


>TC227797 similar to UP|Q8H1N8 (Q8H1N8) At1g20880/F9H16_14, partial (59%)
          Length = 1737

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 89  DSCGKCLRVRNTATGDEATVRIVDQC 114
           DS G+C +VR T T  E    +VD C
Sbjct: 785 DSVGRCTQVRMTYTHKEGKPILVDSC 708


>TC224627 similar to UP|PSBY_ARATH (O49347) Photosystem II core complex
           proteins psbY, chloroplast precursor (L-arginine
           metabolising enzyme) (L-AME) [Contains: Photosystem II
           protein psbY-1 (psbY-A1); Photosystem II protein psbY-2
           (psbY-A2)], partial (49%)
          Length = 1049

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 14/34 (41%), Positives = 16/34 (46%)
 Frame = +2

Query: 69  AWRKKYGWTAFCGPAGAHGRDSCGKCLRVRNTAT 102
           AWR   GW   C      G  SCG C R + TA+
Sbjct: 494 AWR--LGWVGGCAACVGGGF*SCGCCERQQGTAS 589


>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
           (japonica cultivar-group)}, partial (5%)
          Length = 429

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = -3

Query: 9   ITQRKLSIVAVWWLIAATFANGQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNAN--K 66
           +   ++  V   W I   F     A N   ++ ++     G N  T+  +CATW +   K
Sbjct: 376 VPDNEIGAVESEWSIG*CFY*KVEARNAYISFEVW-----GGNYYTSRCFCATWYSCGWK 212

Query: 67  PLAWRKKY 74
              W+ KY
Sbjct: 211 TFNWKYKY 188


>TC229673 similar to GB|AAM26654.1|20856224|AY101533 At1g14810/F10B6_6
           {Arabidopsis thaliana;} , partial (51%)
          Length = 1442

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 69  AWRKKYGWTAFCGPAGAHGRDSCGKCLRVR 98
           +WR++  W A+ GP G   R  CG   RV+
Sbjct: 875 SWRRRRRW-AWGGPGGGPRRGGCGAKQRVK 789


>BI321673 
          Length = 318

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 13/38 (34%), Positives = 16/38 (41%)
 Frame = +1

Query: 59 CATWNANKPLAWRKKYGWTAFCGPAGAHGRDSCGKCLR 96
          C  W++ K   WR+  GWTA   P        C K  R
Sbjct: 52 CRKWSSKK--TWRRCRGWTAARCPRATTTPFRCSKAAR 159


>TC223929 
          Length = 567

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 53  LTAG--AYCATWNANKPLAWRKKYGWTAFCG 81
           L AG  A+ ATW  +KP       G  AFCG
Sbjct: 185 LAAGTAAWAATWKLSKPFRINLSAGAGAFCG 277


>TC211300 UP|Q8CH69 (Q8CH69) Survival of motor neuron protein (Fragment),
           partial (5%)
          Length = 1151

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
 Frame = +1

Query: 40  YNLYNPQQIG--WNLL-----TAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRDSCG 92
           Y    P  IG  WN +     T G+Y +TW       W+     +  CG   +  R  C 
Sbjct: 142 YTKQIPFPIGSTWNFVILTQDTLGSY*STWIVRMRSLWKHIDPCSMNCGNFRSKKRCLCA 321

Query: 93  KCLRV 97
           +C+++
Sbjct: 322 RCMKL 336


>TC231556 similar to UP|Q8GUH2 (Q8GUH2) Expressed protein (At1g01560),
           partial (16%)
          Length = 456

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 47  QIGWNLLTAGAYCATWNANKPLAWRKKYGW 76
           Q GW  +    +C +W  N+P   R+ + W
Sbjct: 136 QRGWTTIMVQCWC*SWCWNRPWDVRRAWDW 225


>TC231932 similar to GB|AAS75312.1|45680886|AY568529 multidomain cyclophilin
           type peptidyl-prolyl cis-trans isomerase {Arabidopsis
           thaliana;} , partial (13%)
          Length = 329

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (63%)
 Frame = +1

Query: 124 NVFRRLDSNGQGNHQGHLTVNYRFVNCG 151
           NV ++++  G  + +GH TV  + +NCG
Sbjct: 226 NVLKKIEEFG--DEEGHPTVTVKIINCG 303


>BE804852 
          Length = 238

 Score = 25.8 bits (55), Expect = 8.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 62  WNANKPLAWRKKYGWTAFCGPAGAHGRDSCGKCLRVRNTATGDEATV 108
           WNA    AW         C     H  D C +CL  + +AT +E TV
Sbjct: 44  WNAVSLWAWDIAVDNRTICLN---HIMDLCIECLAYQTSATSEECTV 175


>TC203370 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), partial
           (27%)
          Length = 1507

 Score = 25.8 bits (55), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  KYGWTAFCGPAGAHGRDSCG 92
           K+ W A+CG +GA+    CG
Sbjct: 691 KWEWIAYCGDSGANWS*RCG 750


>TC231423 similar to UP|Q9LID4 (Q9LID4) Similarity to disease resistance
           response protein, partial (40%)
          Length = 650

 Score = 25.8 bits (55), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 45  PQQIGWNLLTAGAYC---ATWNANKPLAWRKKYGWTAFCG 81
           P+ +G +L  AGA     A W      +W+KK+ W +F G
Sbjct: 295 PKSVG-DLSVAGAAATRTAVWFWPLTTSWKKKWRWLSFSG 179


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.134    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,126,258
Number of Sequences: 63676
Number of extensions: 121009
Number of successful extensions: 547
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of query: 151
length of database: 12,639,632
effective HSP length: 89
effective length of query: 62
effective length of database: 6,972,468
effective search space: 432293016
effective search space used: 432293016
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)


Lotus: description of TM0280a.5