TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0279a.6
         (1582 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922226                                                              156  6e-38
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             146  4e-35
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   144  4e-34
BU549979                                                              102  1e-21
AW185460                                                              101  3e-21
BE802806                                                               95  3e-19
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...    94  5e-19
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa...    64  3e-16
CO982036                                                               84  6e-16
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p...    81  3e-15
BG508993                                                               79  2e-14
BI784757                                                               73  9e-13
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ...    68  3e-11
BU764568                                                               50  1e-10
BI424202                                                               65  2e-10
AI855899 similar to GP|2244960|emb| retrotransposon like protein...    65  2e-10
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...    64  7e-10
TC203574 weakly similar to UP|Q850I3 (Q850I3) Gag-pol polyprotei...    63  1e-09
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti...    62  2e-09
CO983062                                                               40  2e-08

>CF922226 
          Length = 667

 Score =  156 bits (395), Expect = 6e-38
 Identities = 90/228 (39%), Positives = 127/228 (55%), Gaps = 13/228 (5%)
 Frame = -3

Query: 90  MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
           M+K+L+N+L+ KQ LYS KM E   +   +  FN ++ DL  + VT+DDED+ ++LLC L
Sbjct: 665 MTKSLVNRLYXKQSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYL 486

Query: 150 PGSYDHLVTTLTYGKDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGRGK 209
           P SY H   TL +G+DS++LD +  T L   +     E+   +SGEGL         RGK
Sbjct: 485 PKSYSHFKETLLFGRDSVSLDEV-QTALNSKELNERKEKKSSASGEGL-------TARGK 330

Query: 210 GKAVDSG-KKKRSKSKDRKTAE-------CYSCKQIGHWKRDCPNRSGKSGNS-----SS 256
               DS   KK+ K +++K  E       CY CK+ GH ++ CP R    G++     S 
Sbjct: 329 TFKKDSEFDKKKQKPENQKNGEGNIFKIRCYHCKKEGHTRKVCPERQKNGGSNNRKKDSG 150

Query: 257 AANVVQSDGSCSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSF 304
            A +VQ DG  S E L+ VS       W++DSGCS HMTP++ WF  F
Sbjct: 149 NAAIVQDDGYESAEALM-VSEKNPETKWIMDSGCSWHMTPNKSWFEQF 9


>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  146 bits (369), Expect(2) = 4e-35
 Identities = 98/332 (29%), Positives = 161/332 (47%), Gaps = 12/332 (3%)
 Frame = +1

Query: 220  RSKSKDRKTAECYSCKQIGHWKRDC------PNRSGKSGNSSSAANVVQSDGSCSEEDLL 273
            + K   RK   C+ C + GH K  C      P+   +S NS      V    + S   L+
Sbjct: 1477 QQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVS---LV 1647

Query: 274  CVSYVKCT--DAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCIIKGM*QVKIA 331
              + ++ +  + W LDSGCS HMT  +E+  + + C   YV  GD     I GM +    
Sbjct: 1648 VHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGK---- 1815

Query: 332  LDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTA 391
            L   G+ +L++V  V  +T NLIS+  L + G++    ++  ++   K  + +M+  R+ 
Sbjct: 1816 LVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEV-LMKGSRSK 1992

Query: 392  GNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTIG-- 449
             N Y             + + +D  ++WH R GHL  RGM ++  +  ++G+ +  I   
Sbjct: 1993 DNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEG 2172

Query: 450  -LCKYCVLGKQCRVRFKTGQHKTKG-ILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRK 507
             +C  C +GKQ ++  +  QH+T   +L+ +H D+ GP +  S+GG RY     DDFSR 
Sbjct: 2173 RICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRF 2352

Query: 508  VWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
             WV F++ KSE F  FK     ++ +    IK
Sbjct: 2353 TWVNFIREKSETFEVFKELSLRLQREKDCVIK 2448



 Score =  129 bits (323), Expect = 1e-29
 Identities = 69/207 (33%), Positives = 117/207 (56%)
 Frame = +1

Query: 1304 LGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIE 1363
            LG+++ + + +  ++LSQ+ Y + ++ +F M  A+   TP   H KLS ++   +  +  
Sbjct: 3892 LGLQVKQMEDS--IFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS- 4062

Query: 1364 GMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADR 1423
                  + S +G L+Y +  +RPD+  A     ++ + P   H   VK IL+Y+ GT+D 
Sbjct: 4063 -----LYRSMIGSLLY-LTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDY 4224

Query: 1424 GIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTE 1483
            GIM+       P++VGY D+D+AG  DDR+ST+G  F L    I W S  Q+ V++ST E
Sbjct: 4225 GIMYCHCSN--PMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAE 4398

Query: 1484 AEYMAVAEAVKEALWLTGLVKKLGVEQ 1510
            AEY+A   +  + +W+  ++K+  VEQ
Sbjct: 4399 AEYIAAGSSCSQLVWMKQMLKEYNVEQ 4479



 Score = 30.4 bits (67), Expect = 6.4
 Identities = 42/142 (29%), Positives = 57/142 (39%), Gaps = 2/142 (1%)
 Frame = +2

Query: 1091 RRWSP*KRMRHGILFSCHMERELLVASGCTRKSQQ*QKKKVK--SSRLA*LQRGIHNRRG 1148
            + WS  K M+ G  F    E   L  SG +R       KKV    +R   L +     + 
Sbjct: 3257 KNWSNSKGMKSGS*FLGLRELM*LAPSGSSRTKPM---KKVS*PETRPDWLLKATLRLKV 3427

Query: 1149 LIMMRFSVWWLDTLLSGQY*LW*PAGICTESRWM*KQFSSMVI*RSKSTWRSQMDSVKLE 1208
              +MR     LD   S  Y +   +   + +RWM*+    M  *  KS W SQ D     
Sbjct: 3428 *TLMRLLPQLLDLSPSDYYLV*LVSSNSSCTRWM*RAHF*MDT*MKKSMWSSQRDLQTRL 3607

Query: 1209 MADLFAN*RGLCMA*SSLQGSG 1230
            +  ++   R L M *S LQ  G
Sbjct: 3608 IQIMYTGSRRLSMD*SKLQELG 3673



 Score = 21.9 bits (45), Expect(2) = 4e-35
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 572  HHSRMVLQRG*TGL*QRRQGA 592
            HH+RM   RG TGL +R  G+
Sbjct: 2546 HHNRMG*LRGKTGLCKRLLGS 2608


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  144 bits (362), Expect = 4e-34
 Identities = 96/329 (29%), Positives = 160/329 (48%), Gaps = 9/329 (2%)
 Frame = +1

Query: 220  RSKSKDRKTAECYSCKQIGHWKRDCPNRSGKSGN---SSSAANVVQSDGSCSEEDLLCVS 276
            + K   RK   C+ C + GH K  C +  G   +   SSS+   +          L+  +
Sbjct: 1480 QQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHT 1659

Query: 277  YVKCT--DAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCIIKGM*QVKIALDD 334
             ++ +  + W LDSGCS HMT  +E+  + + C   YV  GD     I GM +    L  
Sbjct: 1660 SLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGK----LVH 1827

Query: 335  GGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNI 394
             G+ +L++V  V  +T NLIS+  L + G++    ++  ++   K  + +M+  R+  N 
Sbjct: 1828 DGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEV-LMKGSRSKDNC 2004

Query: 395  YKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTIG---LC 451
            Y             + + +D  K+WH R GHL  RGM ++  +  ++G+ +  I    +C
Sbjct: 2005 YLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRIC 2184

Query: 452  KYCVLGKQCRVRFKTGQHKTKG-ILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWV 510
              C +GKQ ++  +  QH+T   +L+ +H D+ GP +  S+GG RY     DDFSR  WV
Sbjct: 2185 GECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 2364

Query: 511  YFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
             F++ KS+ F  FK     ++ +    IK
Sbjct: 2365 NFIREKSDTFEVFKELSLRLQREKDCVIK 2451



 Score =  125 bits (314), Expect = 1e-28
 Identities = 68/207 (32%), Positives = 116/207 (55%)
 Frame = +1

Query: 1304 LGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIE 1363
            LG+++ + + +  ++LSQ+ Y + ++ +F M  A+   TP   H KLS ++   +  +  
Sbjct: 3895 LGLQVKQMEDS--IFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQS- 4065

Query: 1364 GMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADR 1423
                  + S +G L+Y +  +RPD+  A     ++ + P   H   VK IL+Y+ GT+D 
Sbjct: 4066 -----LYRSMIGSLLY-LTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDY 4227

Query: 1424 GIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTE 1483
            GIM+        ++VGY D+D+AG  DDR+ST+G  F L    I W S  Q+ V++ST E
Sbjct: 4228 GIMYCHCSD--SMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAE 4401

Query: 1484 AEYMAVAEAVKEALWLTGLVKKLGVEQ 1510
            AEY+A   +  + +W+  ++K+  VEQ
Sbjct: 4402 AEYIAAGSSCSQLVWMKQMLKEYNVEQ 4482



 Score = 35.0 bits (79), Expect = 0.26
 Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 42/223 (18%)
 Frame = +1

Query: 91  SKTLMNKL-FAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
           SK  M++L     +  +LKM+E   +         I    T LG  + DE     +L SL
Sbjct: 358 SKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSL 537

Query: 150 PGSYDHLVTTLTYGKD--SITLDSISSTL------LQHAQRRRSVEEGGGSSGEGLFVKG 201
           P  +D  VT +   +D  ++ +D +  +L      L     ++S      S+ EG   + 
Sbjct: 538 PKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEY 717

Query: 202 GQDRGRGKGKAV---------------------------------DSGKKKRSKSKDRKT 228
             D   G   AV                                 +  KK   K    K 
Sbjct: 718 DLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKKSDEKPSHSKG 897

Query: 229 AECYSCKQIGHWKRDCPNRSGKSGNSSSAANVVQSDGSCSEED 271
            +C+ C+  GH K +CP    K     S   V +SD + SE++
Sbjct: 898 IQCHGCEGYGHIKAECPTHLKKQRKGLS---VCRSDDTESEQE 1017


>BU549979 
          Length = 615

 Score =  102 bits (254), Expect = 1e-21
 Identities = 47/112 (41%), Positives = 71/112 (62%)
 Frame = -1

Query: 1397 KFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTT 1456
            ++ S PG  HW+  K ++RYL+GT D  +M+ +   +   V+GY DSD+AG +D RRST+
Sbjct: 606  RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLE--VIGYSDSDFAGCVDSRRSTS 433

Query: 1457 GYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAVKEALWLTGLVKKLGV 1508
            GY+F LA G + W+SS Q+++A ST E E++   EA    +WL   +  L V
Sbjct: 432  GYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRV 277


>AW185460 
          Length = 411

 Score =  101 bits (251), Expect = 3e-21
 Identities = 53/108 (49%), Positives = 69/108 (63%)
 Frame = +2

Query: 1384 TRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQGVVPLVVGYVDS 1443
            TRPD+  A S + +FM  P + H+ A K ILRYL+GT   GI ++ E      ++GY DS
Sbjct: 92   TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSE--LLGYTDS 265

Query: 1444 DYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAE 1491
            D+AG  DD +ST+GY F+L  G   W S  Q+ VA ST EAEY+AVAE
Sbjct: 266  DWAGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVAE 409


>BE802806 
          Length = 285

 Score = 94.7 bits (234), Expect = 3e-19
 Identities = 43/89 (48%), Positives = 68/89 (76%)
 Frame = -2

Query: 1299 AAKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKT 1358
            +A++ILG++IHR++   +L+LSQ++Y++ V+ RF M ++ PVSTPL +H KLS+ Q P+T
Sbjct: 269  SARRILGIDIHRDRAKGELFLSQSNYLKKVVERFRMHQSKPVSTPLGHHTKLSVTQAPET 90

Query: 1359 ASEIEGMSKISHASAVGCLMYVMVCTRPD 1387
            A E   M++  +A+ VG +MY MVC+RPD
Sbjct: 89   AEERSKMNQTPYANGVGSIMYGMVCSRPD 3


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
            (7%)
          Length = 804

 Score = 94.0 bits (232), Expect = 5e-19
 Identities = 47/138 (34%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
 Frame = +1

Query: 1374 VGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADRGIMFS-REQG 1432
            +G L Y +  +RP++  A S + +FM +P   H +A K +LR +KGT   G++F  + + 
Sbjct: 34   IGSLRY-LCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFKAKS 210

Query: 1433 VVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEA 1492
              P ++GY DSD+  D +  +ST GY+F     P+   S  Q ++A+ST EAEY+A +  
Sbjct: 211  GKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAASLG 390

Query: 1493 VKEALWLTGLVKKLGVEQ 1510
              +A+W+  L+++L + +
Sbjct: 391  ACQAVWMMNLLEELKLRE 444


>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
          Length = 406

 Score = 64.3 bits (155), Expect(2) = 3e-16
 Identities = 33/70 (47%), Positives = 47/70 (67%)
 Frame = +3

Query: 1439 GYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAVKEALW 1498
            GY D+D+AG + DRRST+GY  T  GG +   S  QS+VA S+ EAE+ A+A  + E LW
Sbjct: 153  GYTDADWAGSVTDRRSTSGYC-TFVGGNLVS*SKKQSVVARSSAEAEFRALAHGICETLW 329

Query: 1499 LTGLVKKLGV 1508
            +  L+++L V
Sbjct: 330  VKKLLQELKV 359



 Score = 40.8 bits (94), Expect(2) = 3e-16
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +1

Query: 1388 LAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADRGI 1425
            +A A S V +FM  PG +H EA   ILRYLKG+  RG+
Sbjct: 7    IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRGL 120


>CO982036 
          Length = 674

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 56/166 (33%), Positives = 83/166 (49%), Gaps = 1/166 (0%)
 Frame = -2

Query: 1312 KGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIEGMSKISHA 1371
            K    L  S  + +  +  R    +A P+S+P+    KLS     K+ S++       + 
Sbjct: 514  KSMPDLLFSLRTSIFEIFCRKPR*QAQPISSPMTTTCKLS-----KSDSDLFS-GPTFYR 353

Query: 1372 SAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQ 1431
            S VG L Y  V  RP+++ A ++VC+FMS P   HW  VK ILRYLKG+   G+      
Sbjct: 352  SVVGALQYTTVI-RPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAI 176

Query: 1432 GVVPLVV-GYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSI 1476
               PL + G+ D+D+A  +DD+RST+G    L    I W    Q +
Sbjct: 175  SSQPLPIRGFCDADWASAVDDKRSTSGAAVFLGPNLISWWXXKQQV 38


>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
           polyprotein, partial (4%)
          Length = 919

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 43/92 (46%), Positives = 58/92 (62%), Gaps = 1/92 (1%)
 Frame = +1

Query: 449 GLCKYCVLGKQCRVRFKTGQH-KTKGILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRK 507
           G+C  C +GK+ R  F TG+  + K +L  VH D+    + P+ G   YF+TF DDFS+K
Sbjct: 325 GVCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIPTHGDNNYFITFIDDFSKK 501

Query: 508 VWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
           +WVYFLK KSE    FK++KA  E Q G K+K
Sbjct: 502 MWVYFLKQKSEACNAFKMFKAFAEKQNGCKVK 597


>BG508993 
          Length = 374

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 40/93 (43%), Positives = 56/93 (60%)
 Frame = +1

Query: 1418 KGTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIV 1477
            KGT D G+ +S        +VG+ DSD+AGD+DDR+STTG+VF +      W S  Q IV
Sbjct: 4    KGTIDFGLFYSPSNNYK--LVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIV 177

Query: 1478 AMSTTEAEYMAVAEAVKEALWLTGLVKKLGVEQ 1510
             + T EAEY+A       A+WL  L+++L + Q
Sbjct: 178  TLFTCEAEYVAATSCTCHAIWLRRLLEELQLLQ 276


>BI784757 
          Length = 430

 Score = 73.2 bits (178), Expect = 9e-13
 Identities = 37/91 (40%), Positives = 56/91 (60%), Gaps = 1/91 (1%)
 Frame = +1

Query: 450 LCKYCVLGKQCRVRFKTGQH-KTKGILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRKV 508
           +C  C+  KQ R  FK     + K  L+ ++SDV GP +  S+GG RYF++F D+ +RKV
Sbjct: 64  VCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGGNRYFISFIDELTRKV 243

Query: 509 WVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
           WVY ++ KS+ F  F+ +K   + Q+G  IK
Sbjct: 244 WVYLIRRKSDFFEVFEKFKNMAKKQSGSLIK 336


>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
          Length = 662

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 38/98 (38%), Positives = 58/98 (58%), Gaps = 2/98 (2%)
 Frame = +3

Query: 1413 ILRYLKGTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSS 1472
            +L+YLKG   +G+ FSRE  +   ++G+ D+D+A  +D  +S T Y F L    I WK+ 
Sbjct: 30   VLKYLKGCPRKGLSFSRESPIQ--ILGFSDADWATCIDSSKSITWYCFFLGSSLISWKAK 203

Query: 1473 VQSIV--AMSTTEAEYMAVAEAVKEALWLTGLVKKLGV 1508
             Q+ V  + S++EA+Y A+     E  WLT L+K L V
Sbjct: 204  KQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHV 317


>BU764568 
          Length = 420

 Score = 49.7 bits (117), Expect(2) = 1e-10
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +3

Query: 1455 TTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAVKEALWLTGLVKKLGVEQ 1510
            T+GY   + G  I WKS  QS+VA S+ EAEY A+A    E +WL  L+ +L  E+
Sbjct: 165  TSGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEE 332



 Score = 36.6 bits (83), Expect(2) = 1e-10
 Identities = 19/62 (30%), Positives = 31/62 (49%)
 Frame = +1

Query: 1397 KFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTT 1456
            +F++ P + HW AV  IL+  K    +G+++  E      ++GY D+D  G   DR    
Sbjct: 4    QFLNSPCQDHWNAVS*ILK*TKSAPGKGLIY--EDKGHSQIIGYSDAD*VGSPSDRHQDI 177

Query: 1457 GY 1458
             Y
Sbjct: 178  VY 183


>BI424202 
          Length = 421

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 33/128 (25%), Positives = 68/128 (52%)
 Frame = -3

Query: 412 DDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKT 471
           +++++ LWH RLGH+S   +  L    +L  +          C+ GKQ   + K G  ++
Sbjct: 395 NEESSMLWHRRLGHISIERIKRLVNEGVLSTLDFADFETYVDCIKGKQTN-KSKKGAKRS 219

Query: 472 KGILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVE 531
             +L+ +H+D+  P  + +    +YF+TF DD+SR +++YF+  + ++    K  + ++ 
Sbjct: 218 SNLLEIIHTDICCPDMDAN--SLKYFITFIDDYSRYMYLYFI-LRMKL*MSLKFLRLKLR 48

Query: 532 NQTGRKIK 539
           N    K++
Sbjct: 47  NNVENKLR 24


>AI855899 similar to GP|2244960|emb| retrotransposon like protein {Arabidopsis
            thaliana}, partial (18%)
          Length = 418

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 47/143 (32%), Positives = 71/143 (48%), Gaps = 1/143 (0%)
 Frame = +1

Query: 1333 DMSKANPVSTPLANHFKLSLEQCPKTASEIEGMSKISHASAVGCLMYVMVCTRPDLAQAA 1392
            +M   N +STP+ + +KLS     K  SE+   +   +   VG L YV + TRP++A   
Sbjct: 10   NMLDCNGISTPMVSSYKLS-----KFGSELLPNAH-QYRDIVGALQYVTL-TRPNIAYNV 168

Query: 1393 SQVCKFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQGVVPLVV-GYVDSDYAGDLDD 1451
            ++V +FMS P + +   VK ILRYL GT  +G++         + +  Y D D+  D  +
Sbjct: 169  NKVSEFMSSPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAE 348

Query: 1452 RRSTTGYVFTLAGGPICWKSSVQ 1474
             RST+G         I W S  Q
Sbjct: 349  MRSTSGSCIFSGSNLIAWSSKKQ 417


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
            (30%)
          Length = 687

 Score = 63.5 bits (153), Expect = 7e-10
 Identities = 29/68 (42%), Positives = 44/68 (64%)
 Frame = +2

Query: 1439 GYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAVKEALW 1498
            GY D+D+AG   DRRST+GY   + G  + WKS  Q++VA S+ EAEY ++A    E +W
Sbjct: 23   GYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCELMW 202

Query: 1499 LTGLVKKL 1506
            +   +++L
Sbjct: 203  IKQFLQEL 226


>TC203574 weakly similar to UP|Q850I3 (Q850I3) Gag-pol polyprotein (Fragment),
            partial (25%)
          Length = 1037

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 46/133 (34%), Positives = 70/133 (52%)
 Frame = +1

Query: 1374 VGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQGV 1433
            VG L Y+ + T  D+    + V +F + P   HW  V  ILR +KG   +G++   ++G 
Sbjct: 640  VGKLNYLTL-TITDIYFHVNVVSQFFNAPHDSHWNVVVQILR*IKGLPGKGLI-DMDKGQ 813

Query: 1434 VPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAV 1493
               +V + ++++  D  DRRST GY   + G  I WKS  Q   A S+TE  Y AVA   
Sbjct: 814  ANTIV-HRNANWERDASDRRSTIGYCVFIGGDLILWKSKKQI*AARSSTEV-YWAVANTT 987

Query: 1494 KEALWLTGLVKKL 1506
             E L L  ++++L
Sbjct: 988  CELL*LKLMLQEL 1026


>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
          Length = 1213

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 46/156 (29%), Positives = 74/156 (46%)
 Frame = +3

Query: 1301 KKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTAS 1360
            +K+ G+ IH+EK           Y +  L RF M +A P++TP+     +  ++     S
Sbjct: 633  QKVYGIFIHQEK-----------YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS 779

Query: 1361 EIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGT 1420
              E      ++  +  L Y +  +RPD+        +F S P   H  AVK ILRYL GT
Sbjct: 780  *KE------YSGMIDSLSY-LTSSRPDIVFVVCLCARFQSYPKISHVTAVKRILRYLVGT 938

Query: 1421 ADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTT 1456
             +  + F +       ++GY D  +AGD  +R+ST+
Sbjct: 939  TNHCLWFKKRSEFD--LLGYCDVYFAGDKVERKSTS 1040


>CO983062 
          Length = 390

 Score = 40.4 bits (93), Expect(2) = 2e-08
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 1445 YAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAVKEALW 1498
            +A ++DDRRST+          I W S  Q + A S+TEAEY  + +   E  W
Sbjct: 228  WASNIDDRRSTSRAAIFPGRNLISWWSKKQKVTARSSTEAEYQILVQTSIELTW 389



 Score = 38.1 bits (87), Expect(2) = 2e-08
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +2

Query: 1384 TRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLK 1418
            TRP++    ++V ++M+ P   HW  VK ILRYLK
Sbjct: 44   TRPEINYVVNKVXQYMTNPLDSHWAVVKRILRYLK 148


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.341    0.149    0.500 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,301,870
Number of Sequences: 63676
Number of extensions: 1189326
Number of successful extensions: 12840
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 10129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11850
length of query: 1582
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1472
effective length of database: 5,635,272
effective search space: 8295120384
effective search space used: 8295120384
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 65 (29.6 bits)