BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0278.2
(507 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC235029 similar to GB|CAA54234.1|472869|ATARPMR ARP protein {Ar... 294 6e-80
BM094313 135 4e-32
CF922292 35 0.10
TC206488 similar to UP|Q6IDA6 (Q6IDA6) At5g63460, partial (72%) 32 0.88
TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase... 31 1.1
CO984718 31 1.5
TC217163 UP|Q84V19 (Q84V19) Sucrose-binding protein 2, complete 31 1.5
TC213120 similar to UP|Q9JL44 (Q9JL44) ATP-binding cassette prot... 30 2.6
TC216362 weakly similar to UP|Q75CK1 (Q75CK1) ACL082Wp, partial ... 30 2.6
CD395775 29 4.4
TC222704 similar to UP|Q93Z46 (Q93Z46) AT4g23890/T32A16_60, part... 29 4.4
CO980672 28 7.4
CF922854 28 7.4
AI966206 28 7.4
TC220495 similar to UP|Q6NKR3 (Q6NKR3) At3g55600, partial (50%) 28 9.7
BM731231 28 9.7
>TC235029 similar to GB|CAA54234.1|472869|ATARPMR ARP protein {Arabidopsis
thaliana;} , partial (28%)
Length = 625
Score = 294 bits (753), Expect = 6e-80
Identities = 134/146 (91%), Positives = 142/146 (96%)
Frame = +3
Query: 362 PNSGDGLKRLSYRVTQWDPSLSNYLKELEKTKPVVLTGDLNCAHEEIDIYNPAGNKKSAG 421
PNSGDGLKRLSYRVT+WDPSLSNYLKELEK+KPV+LTGDLNCAHEEIDIYNPAGNK+SAG
Sbjct: 12 PNSGDGLKRLSYRVTEWDPSLSNYLKELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAG 191
Query: 422 FTDEERKSFAANFLSRGFVDTFRRQHPDVVGYTYWGYRHGGRKTNRGWRLDYFLVSESIA 481
FTDEERKSFA NFLSRGFVDTFRRQHP V+GYTYWGYRHGGRK NRGWRLDYFLVSESIA
Sbjct: 192 FTDEERKSFAKNFLSRGFVDTFRRQHPGVIGYTYWGYRHGGRKFNRGWRLDYFLVSESIA 371
Query: 482 DKVHDSYILPDVMGSDHCPVGLIIKL 507
DKVHDSYILPDV GSDHCP+GL++KL
Sbjct: 372 DKVHDSYILPDVTGSDHCPIGLVVKL 449
>BM094313
Length = 430
Score = 135 bits (340), Expect = 4e-32
Identities = 69/91 (75%), Positives = 81/91 (88%)
Frame = +2
Query: 1 MGSQRLFSNSSQPMLPFVEEKKDMKLNKGLEASPGSKKHVIKGNDANSYSIEIERLRNDP 60
MGS+R FSNSS+P+ PFVE+ K++KL KGLEASPGSKK V++ ND NSYSIEI+RLRNDP
Sbjct: 158 MGSKRPFSNSSKPLSPFVEDTKNVKL-KGLEASPGSKKLVVEENDVNSYSIEIQRLRNDP 334
Query: 61 SIVDTMTVQELRKTLKSIRVPAKGRKEDLLS 91
+IVDTMTV ELRKTLK +VPAKGRK+DLLS
Sbjct: 335 TIVDTMTVHELRKTLKRFKVPAKGRKDDLLS 427
>CF922292
Length = 722
Score = 34.7 bits (78), Expect = 0.10
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Frame = -2
Query: 116 ISSENTSVEVKTKKVDEDHVDDINDNPEVFEHSRG---KRRLKQSGSESETVKVTTKKKL 172
+S EN S +V E D N+N + FE +RG + K GS + K+K
Sbjct: 475 VSQENNS------EVKEQATDPSNNNSQQFEDNRGDLSEDATKGDGSVTPDKNSDVKEKQ 314
Query: 173 LVESDEVSDFKPSR-----------AKRRVSSDIVRVVSQSDE 204
+SDE S KPS +++R SD + S SDE
Sbjct: 313 EEKSDEKSQEKPSEDTKTENQDTSVSEKRSDSDESQQKSDSDE 185
>TC206488 similar to UP|Q6IDA6 (Q6IDA6) At5g63460, partial (72%)
Length = 875
Score = 31.6 bits (70), Expect = 0.88
Identities = 23/67 (34%), Positives = 33/67 (48%)
Frame = +1
Query: 28 KGLEASPGSKKHVIKGNDANSYSIEIERLRNDPSIVDTMTVQELRKTLKSIRVPAKGRKE 87
KGLE + K + N NS E + +TV+ LR LKS + KG+KE
Sbjct: 340 KGLERASAKKTN----NQINSRQ-EGSNSQTTTRDFHNLTVERLRALLKSKGLSTKGKKE 504
Query: 88 DLLSTLK 94
+L++ LK
Sbjct: 505 ELITRLK 525
>TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase M4E13.20 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(13%)
Length = 944
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +2
Query: 124 EVKTKKVDEDHVDDINDNPEVFEHSRGKRRLKQSGSESETVKVTTKKKLLVESDEVSDFK 183
+VK KKVDE+ V+ E E + K++ K++ + + + T+KK D+V D
Sbjct: 434 KVKVKKVDEETVE---VEVEKKEKKKKKKKNKENSEAASSDEEKTEKKKKKHKDKVEDSS 604
Query: 184 PSRAK 188
P K
Sbjct: 605 PELDK 619
>CO984718
Length = 666
Score = 30.8 bits (68), Expect = 1.5
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 66 MTVQELRKTLKSIRVPAKGRKEDLLSTLK 94
+TV+ LR LKS + KG+KE+L++ LK
Sbjct: 277 LTVERLRALLKSKGLSTKGKKEELITRLK 191
>TC217163 UP|Q84V19 (Q84V19) Sucrose-binding protein 2, complete
Length = 1722
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/82 (25%), Positives = 37/82 (44%), Gaps = 1/82 (1%)
Frame = +1
Query: 98 DNNMGEQHPQIEEEHGLLISSENTSVEVKTKKVDEDHVDDINDNPEVFEHSRG-KRRLKQ 156
D+ E+ Q+EEE K ++ E H ++ ++NP VFE + R++
Sbjct: 220 DSMKQEREKQVEEE-----------TREKEEEHQEQHEEEEDENPYVFEEDKDFSTRVET 366
Query: 157 SGSESETVKVTTKKKLLVESDE 178
G +K T+K L++ E
Sbjct: 367 EGGSIRVLKKFTEKSKLLQGIE 432
>TC213120 similar to UP|Q9JL44 (Q9JL44) ATP-binding cassette protein
(Fragment), partial (6%)
Length = 467
Score = 30.0 bits (66), Expect = 2.6
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 NTSVEVKTK----KVDEDHVDDINDNPEVFEHSRGKRRLKQSGSESETVKVTTKKKLLVE 175
N SVE+KT + D DDIN + + R K K +E ++ KKK++
Sbjct: 168 NESVELKTDNNVVRFSLDKSDDINYGKKSQLNKRVKMSRKAKLNELRFYRLKAKKKMISP 347
Query: 176 SDEVS-DFKPSRAKRR 190
+ EV +K +AKR+
Sbjct: 348 NPEVRITYKLEKAKRK 395
>TC216362 weakly similar to UP|Q75CK1 (Q75CK1) ACL082Wp, partial (34%)
Length = 1667
Score = 30.0 bits (66), Expect = 2.6
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Frame = +3
Query: 37 KKHVIKGNDANSYSIEIERLRNDPSIVDTMTVQELRKTLKSIRVPAKGRKEDLLSTLKSF 96
KK I+ DAN + + ER +N D M+ +EL LS F
Sbjct: 900 KKKKIEERDANIAAQQAERAKN-----DRMSGREL-----------------FLSNASLF 1013
Query: 97 MDN----NMGEQHPQI--EEEHGLLISSENTSVEVKTKKVDEDHVDDINDNPEV 144
+D+ ++ ++ P+ EE+G ++E+ T D D++DDI+D+ E+
Sbjct: 1014VDDAEAYDVYQREPESYETEENGSRNAAEDGPSSSATAAADGDYLDDIDDDDEL 1175
>CD395775
Length = 644
Score = 29.3 bits (64), Expect = 4.4
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 139 NDNPEVFEHSRGKRRLKQSGSESETV-KVTTKKKLLVESDEVSDFK 183
++NPE FEHS+G E+E V KV ++ +LV+ D S K
Sbjct: 234 SENPETFEHSQGM-------EETEFVDKVMLERHMLVKGDSCSPAK 350
>TC222704 similar to UP|Q93Z46 (Q93Z46) AT4g23890/T32A16_60, partial (49%)
Length = 390
Score = 29.3 bits (64), Expect = 4.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 354 FYLICGYIPNSGDGLKRLSYRVTQWDPSLSNYLKELEK 391
FY+ CG + DG + + WD ++ L+ELE+
Sbjct: 131 FYMYCGIVQRITDGKAGVLFEGRNWDRMITFRLEELER 244
>CO980672
Length = 874
Score = 28.5 bits (62), Expect = 7.4
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Frame = -2
Query: 68 VQELRKTLKSIRVPA-------KGRKEDLLSTLKSFMDNNMGEQH-------PQIEEEHG 113
++E +++L+ R A K K++L T K D EQ P+IE+
Sbjct: 747 LEETKQSLEGAREEASNLVQRIKSLKKELEQTQKELEDTKAREQRLLQRRDDPEIEDLK- 571
Query: 114 LLISSENTSVEVKTKKVDEDHVDD 137
+ ++ T++E+KT+ DE+ ++
Sbjct: 570 FIANATTTNMEIKTQSSDEEKAEE 499
>CF922854
Length = 816
Score = 28.5 bits (62), Expect = 7.4
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 247 VKLLSWNVNGLRALLKLEGFSALELAQREDFDVLCLQETKLQ 288
+ +LS+N GL + +K +++ + DVLC+QETK++
Sbjct: 674 MNILSFNSRGLGSGVKWSAI--IKMTFDHNLDVLCIQETKIE 793
>AI966206
Length = 502
Score = 28.5 bits (62), Expect = 7.4
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 5/51 (9%)
Frame = -1
Query: 267 SALELAQREDFDVLCLQETKLQEKDINE-----IKRQLIDGYENSFWTCSV 312
S L +E D++CL ETK + IN + +LID + W+C V
Sbjct: 481 SIRRLVLKEQVDMICLHETKKESPAINTAGGVLLGTELIDPFA---WSCGV 338
>TC220495 similar to UP|Q6NKR3 (Q6NKR3) At3g55600, partial (50%)
Length = 711
Score = 28.1 bits (61), Expect = 9.7
Identities = 31/158 (19%), Positives = 65/158 (40%), Gaps = 14/158 (8%)
Frame = +1
Query: 21 KKDMKLNKGLEASPGSKKHVIKGNDANSYSIEIERLRND------PSIVDTMTVQELRKT 74
K ++ L + L A+P + + + ++E+L + PSI M + + +
Sbjct: 106 KTEVNLRRLLAAAPQQQNQAKLVHYVATLREQLEQLAEERTLEGLPSISKAM-LNDYSEK 282
Query: 75 LKSIRVPAKGRKEDLLSTLKSFMDNNMGEQHPQIEEEHGLLISS--------ENTSVEVK 126
+++I D K F N + E+H +IEE+ +L+SS +++ +
Sbjct: 283 IEAIASKLVNHVIDTQVPEKDFERNFVKEKHSEIEEKKQILLSSGLRXRPVPASSTEDRA 462
Query: 127 TKKVDEDHVDDINDNPEVFEHSRGKRRLKQSGSESETV 164
+ + DH I + H R+L + ++ V
Sbjct: 463 HEPAETDHTSPIKLDATAHAHXEKHRKLLEDLTDEMVV 576
>BM731231
Length = 429
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 9/58 (15%)
Frame = -3
Query: 135 VDDINDNPEVFEHSRGKRRLKQSGSESET---------VKVTTKKKLLVESDEVSDFK 183
VDD + + EVF+ + RR+K G E ET V+V+T KL ++ E+ F+
Sbjct: 385 VDD-SQHVEVFQRHQHLRRIKSCGGERETVVRVLEAQGVQVSTGTKLHDDAREMRSFE 215
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,286,527
Number of Sequences: 63676
Number of extensions: 257297
Number of successful extensions: 891
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of query: 507
length of database: 12,639,632
effective HSP length: 101
effective length of query: 406
effective length of database: 6,208,356
effective search space: 2520592536
effective search space used: 2520592536
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0278.2