BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0269b.6
(141 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225324 homologue to UP|RK2_PHAAN (Q8LVH2) Chloroplast 50S ribo... 184 9e-48
BI943316 131 9e-32
TC225323 homologue to UP|Q8HRW4 (Q8HRW4) Ribosomal protein L2 (F... 120 2e-28
TC228545 similar to UP|Q8VZZ7 (Q8VZZ7) Ribosomal protein L2, par... 59 1e-09
TC224723 hydroxyproline-rich glycoprotein 47 3e-06
TC225215 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, c... 45 1e-05
TC204509 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, c... 42 7e-05
TC231926 similar to UP|Q6NPP7 (Q6NPP7) At1g33270, partial (26%) 42 1e-04
TC225221 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, c... 41 2e-04
TC225219 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, p... 41 2e-04
BU084365 37 0.002
CD414134 homologue to GP|12054507|em ribosomal protein L2 {Glyci... 36 0.007
TC228990 UP|Q9LKZ6 (Q9LKZ6) Receptor-like protein kinase 1, comp... 30 0.29
AI959933 weakly similar to GP|27461187|gb type IV collagen alpha... 28 1.1
AI965412 28 1.4
BM954311 weakly similar to GP|21322711|e pherophorin-dz1 protein... 28 1.9
TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxida... 28 1.9
BU091307 similar to GP|12407960|gb| calcium/calmodulin-dependent... 28 1.9
TC208117 similar to GB|AAP21348.1|30102860|BT006540 At3g23220 {A... 28 1.9
AW101164 28 1.9
>TC225324 homologue to UP|RK2_PHAAN (Q8LVH2) Chloroplast 50S ribosomal protein
L2, complete
Length = 5107
Score = 184 bits (468), Expect = 9e-48
Identities = 85/91 (93%), Positives = 87/91 (95%)
Frame = -1
Query: 9 PPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGN 68
PPP GWSTGFITTPLTTGRLPSQH DPALPK FWFTPTFPTCPTVAEQFLDIKRTSPEGN
Sbjct: 1993 PPPCGWSTGFITTPLTTGRLPSQHLDPALPKFFWFTPTFPTCPTVAEQFLDIKRTSPEGN 1814
Query: 69 FNVADFPSFAISFATAPAALANFPPFPNVIT 99
FNVADFPSFAISFATAPAALAN PPFP+VI+
Sbjct: 1813 FNVADFPSFAISFATAPAALANCPPFPSVIS 1721
>BI943316
Length = 382
Score = 131 bits (330), Expect = 9e-32
Identities = 60/69 (86%), Positives = 60/69 (86%)
Frame = -1
Query: 9 PPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGN 68
PPP GWSTGFITTPLTTGRLPSQH DPALPK FWFTPTFPTCPTVAEQFLDIKRTSPEG
Sbjct: 379 PPPCGWSTGFITTPLTTGRLPSQHLDPALPKFFWFTPTFPTCPTVAEQFLDIKRTSPEG* 200
Query: 69 FNVADFPSF 77
F FP F
Sbjct: 199 F*CGRFPLF 173
Score = 33.9 bits (76), Expect = 0.026
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -2
Query: 47 FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAIS 80
FP + F +GNFNVADFPSFAIS
Sbjct: 264 FPLVRLLPSSFWISNGPPQKGNFNVADFPSFAIS 163
>TC225323 homologue to UP|Q8HRW4 (Q8HRW4) Ribosomal protein L2 (Fragment),
partial (63%)
Length = 1191
Score = 120 bits (302), Expect = 2e-28
Identities = 67/98 (68%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = -1
Query: 3 GPPFTPPPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFT-PTFPTCPTVAEQFLDIK 61
GP F P G G L TG L SQH DP L +F FPTCPTVAEQFLDIK
Sbjct: 1179 GPSFHXPHADG-XRGS*XIXLXTGGLXSQHLDPXLT*IFXVXLQHFPTCPTVAEQFLDIK 1003
Query: 62 RTSPEGNFNVADFPSFAISFATAPAALANFPPFPNVIT 99
RTSPEGNFNVADFPSFAISFATAPAALAN PPFP+VI+
Sbjct: 1002 RTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS 889
>TC228545 similar to UP|Q8VZZ7 (Q8VZZ7) Ribosomal protein L2, partial (73%)
Length = 959
Score = 58.5 bits (140), Expect = 1e-09
Identities = 41/89 (46%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = -2
Query: 9 PPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGN 68
PPP G STGFI TP TTG PS PA L T PTVA I +PEG+
Sbjct: 697 PPP*G*STGFIATPRTTGLRPSHRLCPAFLSLRSPWLGLDTTPTVALHRESINFLTPEGS 518
Query: 69 F--NVADFPSFAISFATAPAALANFPPFP 95
+ AD SF I FA PAA + PP P
Sbjct: 517 WIKQYADVGSFKI-FALVPAARTSLPPCP 434
>TC224723 hydroxyproline-rich glycoprotein
Length = 2345
Score = 47.0 bits (110), Expect = 3e-06
Identities = 31/73 (42%), Positives = 35/73 (47%)
Frame = -1
Query: 8 PPPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEG 67
PPPP P L SQ+ PALPK WFT TF TC + ++
Sbjct: 2138 PPPPHADGLRLHNYPYRM--LLSQYLYPALPKFCWFTLTFLTCLLLNNFWIS---KGS*S 1974
Query: 68 NFNVADFPSFAIS 80
NFNVADF SF IS
Sbjct: 1973 NFNVADFSSFTIS 1935
>TC225215 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, complete
Length = 1085
Score = 45.1 bits (105), Expect = 1e-05
Identities = 36/94 (38%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = -1
Query: 9 PPPWGWSTGFITTPLTTGR-----LPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRT 63
PPPWG STGFI TP T G+ L PAL + F P TCP +A Q L
Sbjct: 707 PPPWGCSTGFIATPRTLGQQFLFTLNLW*AFPALRRGFSVLPPPATCPIMALQSLGTIFF 528
Query: 64 SPEGN--FNVADFPSFAISFATAPAALANFPPFP 95
P+G+ V+ I+ A +P A A P P
Sbjct: 527 EPDGSLILEVSLSGL*LITMA*SPDARAKTPRSP 426
>TC204509 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, complete
Length = 1098
Score = 42.4 bits (98), Expect = 7e-05
Identities = 36/94 (38%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = -2
Query: 9 PPPWGWSTGFITTPLTTGR-----LPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRT 63
PPPWG STGFI TP T G+ L PAL + F P T P +A Q L
Sbjct: 728 PPPWGCSTGFIATPRTLGQQFLFTLNLW*AFPALRRGFSVLPPPAT*PIMALQSLGTIFF 549
Query: 64 SPEGN--FNVADFPSFAISFATAPAALANFPPFP 95
P+G+ V+ I+ A +P ALA P P
Sbjct: 548 EPDGSLILEVSLSGL*LITMA*SPDALAKTPRSP 447
>TC231926 similar to UP|Q6NPP7 (Q6NPP7) At1g33270, partial (26%)
Length = 906
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/63 (42%), Positives = 32/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 8 PPPPWGWSTGFITTPLTTGRLPSQHF--DPALPKLFWFTPTFPTCPTVAEQFLDIKRTSP 65
PP + W F LPS+HF +P P CPT+AEQFLDIKRTS
Sbjct: 150 PPVNYKWCASFF--------LPSKHFISQAHVPAN*RIKPL--PCPTIAEQFLDIKRTSS 299
Query: 66 EGN 68
EG+
Sbjct: 300 EGS 308
>TC225221 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, complete
Length = 1020
Score = 41.2 bits (95), Expect = 2e-04
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = -3
Query: 9 PPPWGWSTGFITTPLTTGRLPSQHFD-----PALPKLFWFTPTFPTCPTVAEQFLDIKRT 63
PPP G STGFI TP T G+ + PA + F P TCP +A L
Sbjct: 721 PPP*GCSTGFIATPRTLGQQFLFTLNL**ALPAFRRGFSVLPPPATCPIIALHPLGTIFF 542
Query: 64 SPEGN--FNVADFPSFAISFATAPAALANFPPFP 95
PEG+ V+ + I+ A +P ALA P P
Sbjct: 541 DPEGSLILEVSLSGLWLITMA*SPEALAKTPRSP 440
>TC225219 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, partial (70%)
Length = 724
Score = 41.2 bits (95), Expect = 2e-04
Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = -3
Query: 9 PPPWGWSTGFITTPLTTGR-----LPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRT 63
PPP G STGFI TP T G L PA + F P TCP +A L
Sbjct: 413 PPP*GCSTGFIATPRTLGHEFLFTLNLW*ALPAFRRGFSVLPPPATCPIIALHPLGTIFF 234
Query: 64 SPEGN--FNVADFPSFAISFATAPAALANFPPFP 95
+PEG+ V+ + I+ A +P ALA P P
Sbjct: 233 APEGSLILEVSLSGLWLITIA*SPEALAKTPRSP 132
>BU084365
Length = 421
Score = 37.4 bits (85), Expect = 0.002
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = +1
Query: 115 RDNPSRAKL*KVPFKIKQFHR 135
R+N SRAKL K PFKIKQFHR
Sbjct: 103 RNNSSRAKLSKAPFKIKQFHR 165
>CD414134 homologue to GP|12054507|em ribosomal protein L2 {Glycine max},
partial (46%)
Length = 534
Score = 35.8 bits (81), Expect = 0.007
Identities = 17/30 (56%), Positives = 18/30 (59%)
Frame = +3
Query: 9 PPPWGWSTGFITTPLTTGRLPSQHFDPALP 38
PPPWG STGFI TP T G PA+P
Sbjct: 300 PPPWGCSTGFIATPRTYG--------PAIP 365
>TC228990 UP|Q9LKZ6 (Q9LKZ6) Receptor-like protein kinase 1, complete
Length = 3346
Score = 30.4 bits (67), Expect = 0.29
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +2
Query: 4 PPFTPPPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRT 63
PP +PP P S+ T+P T PS A P L + T T T P E FL
Sbjct: 407 PPLSPPSPPSASS---TSPTTFSTPPSLPSSIASPTLRFSTSTTTT*P---ENFLSPSLP 568
Query: 64 SP-EGNFNVADFPSFAISF-ATAPAALANFPPFP 95
P F A S A S +TAP + ++ P P
Sbjct: 569 CPSSATFTSAATSSPARSLPSTAPGSTSSTSPSP 670
>AI959933 weakly similar to GP|27461187|gb type IV collagen alpha 5 chain
{Canis familiaris}, partial (2%)
Length = 380
Score = 28.5 bits (62), Expect = 1.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 2 GGPPFTPPPPWGWSTGFI 19
GGPPF PPPP G F+
Sbjct: 351 GGPPFPPPPPPGGGGFFL 298
>AI965412
Length = 411
Score = 28.1 bits (61), Expect = 1.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = -3
Query: 45 PTFPTC-----PTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAA 87
P FP P A D++ TSP G V P A +F+ APA+
Sbjct: 151 PPFPLIIASKKPLPANNGPDLEATSPIGKLGVTCNPKIAATFSKAPAS 8
>BM954311 weakly similar to GP|21322711|e pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (9%)
Length = 406
Score = 27.7 bits (60), Expect = 1.9
Identities = 29/94 (30%), Positives = 33/94 (34%)
Frame = +2
Query: 5 PFTPPPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRTS 64
PF PPPP S F P P HF+P P F+P P RTS
Sbjct: 101 PFNPPPP--PSQSFYPPP------PPSHFNPPPPPPHSFSPPPPPF-----------RTS 223
Query: 65 PEGNFNVADFPSFAISFATAPAALANFPPFPNVI 98
P PS F+ P + PP P I
Sbjct: 224 P---------PSPPRPFSPPPPKVRPPPPPPRPI 298
>TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxidase ATP26a
{Arabidopsis thaliana;} , partial (49%)
Length = 731
Score = 27.7 bits (60), Expect = 1.9
Identities = 23/89 (25%), Positives = 37/89 (40%)
Frame = +3
Query: 4 PPFTPPPPWGWSTGFITTPLTTGRLPSQHFDPALPKLFWFTPTFPTCPTVAEQFLDIKRT 63
P F+PPPP S+ P + + +P P + T P CP++
Sbjct: 384 PTFSPPPP-ATSSPCSAAPSSPSSSAAATAEPPSPPPYPPTSPPPPCPSLKSPNSSPNAA 560
Query: 64 SPEGNFNVADFPSFAISFATAPAALANFP 92
SP N + + P+ + S TAP++ P
Sbjct: 561 SPSKNSSPSVGPTPSDSL-TAPSSSRTSP 644
>BU091307 similar to GP|12407960|gb| calcium/calmodulin-dependent protein
kinase IV {Xenopus laevis}, partial (5%)
Length = 434
Score = 27.7 bits (60), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 90 NFPPFPNVITHFFINRTFYKRHKTKRDNPSRAK 122
N+PPF +V+T + + TF T +NP R +
Sbjct: 39 NYPPFRHVVTAYPFSTTFALTLLTHNNNPLRIR 137
>TC208117 similar to GB|AAP21348.1|30102860|BT006540 At3g23220 {Arabidopsis
thaliana;} , partial (42%)
Length = 509
Score = 27.7 bits (60), Expect = 1.9
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = +3
Query: 72 ADFPSFAISFATAPAALANFPPFPNVITHFFINRTFYKRHKTKRDNPSRAKL*KVPFKIK 131
A FP +IS T+ NF PFP ++ +F+ F K +P ++* + K+K
Sbjct: 153 ACFPQISISLCTS-----NFSPFPFWVSIYFLFFFFGSNMKMMGVHP*PLRI*DLERKMK 317
Query: 132 QF 133
F
Sbjct: 318 DF 323
>AW101164
Length = 415
Score = 27.7 bits (60), Expect = 1.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 84 APAALANFPPFPNVITHFF 102
+P L+N PPFP ++ HF+
Sbjct: 382 SPLVLSNPPPFPQLLIHFY 326
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.329 0.144 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,569,528
Number of Sequences: 63676
Number of extensions: 142169
Number of successful extensions: 1610
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of query: 141
length of database: 12,639,632
effective HSP length: 88
effective length of query: 53
effective length of database: 7,036,144
effective search space: 372915632
effective search space used: 372915632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0269b.6