TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269b.11
         (146 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231304 UP|CYF_SOYBN (P49161) Apocytochrome f precursor , complete   239  4e-64
AW200668 similar to SP|P49161|CYF_S Apocytochrome f precursor. [...    93  5e-20
BG157085 similar to SP|Q9SX33|ALA9 Potential phospholipid-transp...    27  2.7
TC217701 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/...    26  7.8
CA818874                                                               26  7.8
TC203684 weakly similar to UP|Q7Q8B1 (Q7Q8B1) EbiP5126 (Fragment...    26  7.8

>TC231304 UP|CYF_SOYBN (P49161) Apocytochrome f precursor , complete
          Length = 964

 Score =  239 bits (609), Expect = 4e-64
 Identities = 114/134 (85%), Positives = 125/134 (93%)
 Frame = +2

Query: 13  RILANGKRGALNVGAVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPV 72
           ++LANGK+GALNVGAVLILPEGFELAP DRISPEIKEK+GNLSFQ+YRPTKKNILVVGPV
Sbjct: 281 QVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQNYRPTKKNILVVGPV 460

Query: 73  PGQKYSEITFPILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATKSGI 132
           PGQKY EITFPILSPDP T RDV+FLKYPIYVGGNRGRGQIY DGSKSNNNVYNAT +G+
Sbjct: 461 PGQKYKEITFPILSPDPTTKRDVHFLKYPIYVGGNRGRGQIYLDGSKSNNNVYNATAAGM 640

Query: 133 INKIIRKDKGGIHL 146
           + KIIRK+KGG  +
Sbjct: 641 VKKIIRKEKGGYEI 682


>AW200668 similar to SP|P49161|CYF_S Apocytochrome f precursor. [Soybean]
           {Glycine max}, partial (19%)
          Length = 250

 Score = 92.8 bits (229), Expect = 5e-20
 Identities = 46/72 (63%), Positives = 53/72 (72%), Gaps = 1/72 (1%)
 Frame = +2

Query: 68  VVG-PVPGQKYSEITFPILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNNVYN 126
           VVG PV  QKY EIT PILSPDP TNRDV+FLKYPIYV  N G   +Y   SKSNNNVYN
Sbjct: 2   VVGRPVTAQKYKEITSPILSPDPTTNRDVHFLKYPIYVRVNSGSRHLYLSASKSNNNVYN 181

Query: 127 ATKSGIINKIIR 138
           AT  G++  +++
Sbjct: 182 ATTCGMVQHLLQ 217


>BG157085 similar to SP|Q9SX33|ALA9 Potential phospholipid-transporting
           ATPase 9 (EC 3.6.3.1) (Aminophospholipid flippase 9).,
           partial (7%)
          Length = 473

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 45  PEIKEKMGNLSFQSYRPTKKNILVVGPVPGQKYSEITFPILS---PDPATNRDV 95
           PE+ E+ GN+S+++  P +   ++     G K+ + T   LS    DP +  +V
Sbjct: 196 PEVDEETGNVSYEAESPDEAAFVIAAREVGFKFYKRTQTCLSIYELDPVSGNEV 357


>TC217701 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F9N11_110
           {Arabidopsis thaliana;} , partial (68%)
          Length = 878

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 124 VYNATKSGIINKIIRKDKGGIHL 146
           +YN   S I N+I+ + KGG+ +
Sbjct: 846 LYNCLSSNISNQILNRKKGGVEM 778


>CA818874 
          Length = 444

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 22/58 (37%), Positives = 28/58 (47%)
 Frame = -3

Query: 19  KRGALNVGAVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPGQK 76
           KRG ++ G  L  P  F L P  + +PE K+ +G        P KKNI    P PG K
Sbjct: 439 KRGGVSKGFKLGEPRVFSLPPFLKNAPE-KKILG--------PFKKNIFF--PTPGVK 299


>TC203684 weakly similar to UP|Q7Q8B1 (Q7Q8B1) EbiP5126 (Fragment), partial
           (49%)
          Length = 1062

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/31 (38%), Positives = 18/31 (57%)
 Frame = +3

Query: 59  YRPTKKNILVVGPVPGQKYSEITFPILSPDP 89
           Y+P  K++ +V P+P      I  PIL P+P
Sbjct: 555 YKPIPKSVPIVKPIP------IIKPILKPNP 629


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.141    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,250,267
Number of Sequences: 63676
Number of extensions: 65174
Number of successful extensions: 298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of query: 146
length of database: 12,639,632
effective HSP length: 88
effective length of query: 58
effective length of database: 7,036,144
effective search space: 408096352
effective search space used: 408096352
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)