BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0266.9
(111 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC206814 similar to UP|Q6ZH45 (Q6ZH45) Sialyltransferase-like pr... 162 7e-51
TC206815 weakly similar to UP|Q6ZH45 (Q6ZH45) Sialyltransferase-... 167 7e-43
TC222622 29 0.29
BU081507 28 0.66
TC228625 28 0.86
TC226102 similar to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, part... 27 1.1
TC226101 similar to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, part... 27 1.5
BE821272 weakly similar to SP|Q9SJL6|ME11 Membrin 11 (AtMEMB11) ... 27 1.9
BG510036 27 1.9
TC210272 similar to UP|Q84VW5 (Q84VW5) At1g11760, partial (72%) 25 4.2
TC221933 weakly similar to UP|Q9VE51 (Q9VE51) CG7698-PA (RE31408... 25 4.2
TC220153 25 5.6
TC219024 similar to UP|SYFA_ARATH (Q9T034) Probable phenylalanyl... 25 5.6
BE823810 25 7.2
TC218162 similar to GB|AAO42901.1|28416741|BT004655 At3g06530 {A... 25 7.2
TC218792 homologue to UP|O44991 (O44991) Lipid depleted protein ... 25 7.2
TC214755 similar to UP|O24323 (O24323) Cysteine proteinase precu... 25 7.2
CF921787 24 9.5
BF069947 weakly similar to GP|24459855|emb disease resistance-li... 24 9.5
>TC206814 similar to UP|Q6ZH45 (Q6ZH45) Sialyltransferase-like protein,
partial (82%)
Length = 1543
Score = 162 bits (409), Expect(2) = 7e-51
Identities = 74/82 (90%), Positives = 78/82 (94%)
Frame = +1
Query: 30 SVYPTYHLTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSDYCQTTINFPSDTIPKWKDP 89
S YP+YHLTDEDTQALLSLH+TFQKCV+ANGLGLKA +DYCQTTINFPSDTIPKWKDP
Sbjct: 178 SFYPSYHLTDEDTQALLSLHDTFQKCVTANGLGLKATRGTDYCQTTINFPSDTIPKWKDP 357
Query: 90 KTGELEALSFDFNLCEAVATWE 111
KTGELEALSFDFNLCEAVATWE
Sbjct: 358 KTGELEALSFDFNLCEAVATWE 423
Score = 53.5 bits (127), Expect(2) = 7e-51
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 1 MRVLQLGLLLALASGFAAISIYIIGLSDPSV 31
MRVLQLGL LALASGFAAISIYI GLSDP +
Sbjct: 95 MRVLQLGLFLALASGFAAISIYITGLSDPFI 187
>TC206815 weakly similar to UP|Q6ZH45 (Q6ZH45) Sialyltransferase-like
protein, partial (20%)
Length = 500
Score = 167 bits (423), Expect = 7e-43
Identities = 77/86 (89%), Positives = 80/86 (92%)
Frame = +1
Query: 26 LSDPSVYPTYHLTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSDYCQTTINFPSDTIPK 85
LSDP VYP+YHLTDEDTQALLSLH+TF KCVSANGLGLKA +DYCQTTINFPSDTIPK
Sbjct: 196 LSDPFVYPSYHLTDEDTQALLSLHDTFHKCVSANGLGLKATSGTDYCQTTINFPSDTIPK 375
Query: 86 WKDPKTGELEALSFDFNLCEAVATWE 111
WKDPKTGELEALSFDFNLCEAV TWE
Sbjct: 376 WKDPKTGELEALSFDFNLCEAVGTWE 453
Score = 30.8 bits (68), Expect = 0.10
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
Frame = +2
Query: 1 MRVLQLGLLLALASGFAA----------ISIYIIGLSDPSVYPTY 35
MR+LQLGL LAL SGFA I +YI ++ P P +
Sbjct: 119 MRILQLGLFLALPSGFAXHFHLHHRXSLILLYIPVITSPMKTPKH 253
>TC222622
Length = 594
Score = 29.3 bits (64), Expect = 0.29
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +3
Query: 8 LLLALASGFAAISIYIIGLSDPSVYPTYHLTD 39
++ GF I+ +I+GL +PTYHL+D
Sbjct: 279 IIAGTGGGFHVINHFIVGL*ADDWWPTYHLSD 374
>BU081507
Length = 474
Score = 28.1 bits (61), Expect = 0.66
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 3/70 (4%)
Frame = -3
Query: 9 LLALASGFAAISIYIIGLSDPSVYPTYHLTDEDTQALLSLHNTFQKCVS---ANGLGLKA 65
+ AL S +S + S+ S++ + E + + LS HN F++C+S L K
Sbjct: 409 IFALRSAIYIVSSSDLRASNSSIFFHFFFR-ESSASFLSAHNLFKRCISDIKVFKLAFKP 233
Query: 66 AMSSDYCQTT 75
A S QT+
Sbjct: 232 ATSLSLAQTS 203
>TC228625
Length = 742
Score = 27.7 bits (60), Expect = 0.86
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Frame = -1
Query: 46 LSLHNTFQKCVSANG--LGLKAAMSSDYCQT-TINFPSDTIPKWKDPKTGELEALS 98
LS N F + N L K SS+YC+ ++FP T PKW + E +L+
Sbjct: 547 LSRDNGFPHILKHNQQILWCKVENSSNYCKNHNVSFPYATSPKWSTHNSLENHSLT 380
>TC226102 similar to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, partial (19%)
Length = 634
Score = 27.3 bits (59), Expect = 1.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 84 PKWKDPKTGELEALSFDFNLCE 105
PKW D + G AL FDFN +
Sbjct: 438 PKWNDLELGPDPALGFDFNFMD 503
>TC226101 similar to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, partial (66%)
Length = 825
Score = 26.9 bits (58), Expect = 1.5
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = +3
Query: 84 PKWKDPKTGELEALSFDFN 102
PKW D + G AL FDFN
Sbjct: 768 PKWNDLELGPDPALGFDFN 824
>BE821272 weakly similar to SP|Q9SJL6|ME11 Membrin 11 (AtMEMB11) (Golgi SNAP
receptor complex member 2-1) (27 kDa Golgi SNARE
protein)., partial (68%)
Length = 510
Score = 26.6 bits (57), Expect = 1.9
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -3
Query: 23 IIGLSDPSVYPTYHLTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSDYCQ 73
++G ++ + DE+ QAL S+ ++ Q+ +AN LG +A +SS + Q
Sbjct: 361 LLGRANGDSAHVLRIYDEEAQALQSVRSSSQELENANALG-EAILSSIHGQ 212
>BG510036
Length = 428
Score = 26.6 bits (57), Expect = 1.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 63 LKAAMSSDYCQTTINFPSDTIPKWKDPKTGELEALSFDFNLCEAV 107
++A ++ +C+ IN PS I + K+P ++E ++F+ C +
Sbjct: 139 MQAKIAFQFCEQLINTPSLKIEQPKEP-VSKIEMKIWNFSTCNCI 8
>TC210272 similar to UP|Q84VW5 (Q84VW5) At1g11760, partial (72%)
Length = 627
Score = 25.4 bits (54), Expect = 4.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 26 LSDPSVYPTYHLTDEDTQALL--SLHNTFQKCVSANGLGLKAAMSSDYCQT 74
+ DP +PT H+++ T + SL+N +Q V A L+A ++ +T
Sbjct: 66 IKDPHSHPTLHVSENGTMDSIVDSLNNAYQDFVVAAANVLEAKENAGSIKT 218
>TC221933 weakly similar to UP|Q9VE51 (Q9VE51) CG7698-PA (RE31408p), partial
(7%)
Length = 434
Score = 25.4 bits (54), Expect = 4.2
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = -3
Query: 36 HLTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSDYCQ 73
HL+ + TQ S T ++C N L A SS CQ
Sbjct: 243 HLSPDSTQLKNSNAKTLRRCFLLNSLHYALAHSSFTCQ 130
>TC220153
Length = 894
Score = 25.0 bits (53), Expect = 5.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 46 LSLHNTFQKCVSANGLGLKAAMSSDYCQ 73
L+LH + KC+ G LK+ +++CQ
Sbjct: 584 LALHGSQVKCLRIYGSRLKSVWDNNHCQ 667
>TC219024 similar to UP|SYFA_ARATH (Q9T034) Probable phenylalanyl-tRNA
synthetase alpha chain (Phenylalanine--tRNA ligase
alpha chain) (PheRS) , partial (41%)
Length = 763
Score = 25.0 bits (53), Expect = 5.6
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +1
Query: 3 VLQLGLLLALASGFAAISIYIIGLSDPSVYPTYHLTDEDTQALLSLHNTFQKCVSANGLG 62
V LGL L G +G++ P Y+ E + + S H F+K V G
Sbjct: 235 VCDLGLTLCDLIGVLHDFFSRLGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSG 414
Query: 63 L 63
+
Sbjct: 415 M 417
>BE823810
Length = 340
Score = 24.6 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 46 LSLHNTFQKCVSANGLGLKAAMSSDYCQ 73
L+LH + KC+ G LK+ +++CQ
Sbjct: 249 LALHGS*AKCLHIYGSRLKSIWDNNHCQ 166
>TC218162 similar to GB|AAO42901.1|28416741|BT004655 At3g06530 {Arabidopsis
thaliana;} , partial (98%)
Length = 946
Score = 24.6 bits (52), Expect = 7.2
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 32 YPTYHLTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSDYCQTTINFPSD 81
YP Y L D + AL S H T + +G+ + + I FP++
Sbjct: 721 YPLYFLFDYTSLALCSCHKTMNTALLIYVIGI----GEGFLHSEIPFPAE 584
>TC218792 homologue to UP|O44991 (O44991) Lipid depleted protein 6, partial
(4%)
Length = 756
Score = 24.6 bits (52), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 39 DEDTQALLSLHNTFQKCVSANGLGLKAAMS 68
DED + LLS TF + G+G++ + S
Sbjct: 112 DEDQRELLSQSGTFFFTILVGGIGVRVSQS 23
>TC214755 similar to UP|O24323 (O24323) Cysteine proteinase precursor ,
partial (96%)
Length = 1828
Score = 24.6 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (57%), Gaps = 2/24 (8%)
Frame = -1
Query: 78 FPSD--TIPKWKDPKTGELEALSF 99
FPS P+W DP+TG + A F
Sbjct: 394 FPSTWPCTPRW*DPRTGSVRACRF 323
>CF921787
Length = 512
Score = 24.3 bits (51), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 50 NTFQKCVSANGLGLKAAMSSDYCQTTI 76
NT++ VS N + A SS +C+ T+
Sbjct: 90 NTYRGSVSLNAFSVSVAASSVFCKYTM 170
>BF069947 weakly similar to GP|24459855|emb disease resistance-like protein
{Coffea arabica}, partial (30%)
Length = 426
Score = 24.3 bits (51), Expect = 9.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 46 LSLHNTFQKCVSANGL 61
+ HN+F+ CVS +GL
Sbjct: 119 IDYHNSFETCVSTDGL 166
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,531,954
Number of Sequences: 63676
Number of extensions: 71604
Number of successful extensions: 273
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 111
length of database: 12,639,632
effective HSP length: 87
effective length of query: 24
effective length of database: 7,099,820
effective search space: 170395680
effective search space used: 170395680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0266.9