BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0265.9
(456 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210279 similar to UP|Q9LNL6 (Q9LNL6) F12K21.12, partial (33%) 158 4e-39
TC219357 similar to UP|Q9LNL6 (Q9LNL6) F12K21.12, partial (43%) 131 6e-31
TC230345 similar to UP|Q93Z91 (Q93Z91) AT5g42660/MJB21_3, partia... 122 4e-28
AI900787 121 6e-28
TC232908 similar to UP|Q9FZ97 (Q9FZ97) F3H9.11 protein, partial ... 61 1e-20
AW458639 similar to GP|12060519|db P0475H04.14 {Oryza sativa (ja... 71 9e-13
TC221665 similar to UP|Q94AV6 (Q94AV6) AT4g38500/F20M13_60, part... 70 2e-12
BE820328 64 1e-10
BF425821 57 1e-08
TC222670 similar to UP|Q9FZ97 (Q9FZ97) F3H9.11 protein, partial ... 43 3e-04
TC209579 homologue to UP|Q9FZ97 (Q9FZ97) F3H9.11 protein, partia... 42 6e-04
TC221228 similar to UP|Q93V55 (Q93V55) Male sterility 1 protein,... 25 1.00
TC224258 homologue to UP|CRTI_SOYBN (P28553) Phytoene dehydrogen... 31 1.3
TC208996 UP|CRTI_SOYBN (P28553) Phytoene dehydrogenase, chloropl... 31 1.3
BG790810 30 2.3
TC227625 30 3.0
TC234212 29 3.9
TC220322 29 5.0
TC219769 29 5.0
BE475638 similar to PIR|F86281|F86 protein F10B6.14 [imported] -... 29 5.0
>TC210279 similar to UP|Q9LNL6 (Q9LNL6) F12K21.12, partial (33%)
Length = 977
Score = 158 bits (400), Expect = 4e-39
Identities = 103/270 (38%), Positives = 150/270 (55%), Gaps = 9/270 (3%)
Frame = +3
Query: 147 FPISDSDRIAMEKCKNVVVVSAIFNDHDKIRQPKG--LGSKTLENVCFFIFIDDITLKRL 204
F I++ D+ M +CK V V S IF D +R+P + + +NVCF +F+DD TL +L
Sbjct: 21 FDINEKDKAYMYRCK-VAVSSCIFGSSDFLRRPTSRLMSQYSKDNVCFVMFLDDQTLSKL 197
Query: 205 EHHDLISRKSSEYKIGVWRVVKVSKEYLYLNPAMNGVIPKYLVHRLFPNSQFSIWIDAKL 264
S + IG+W++V V K Y + G +PK+L HRLFPNS++SIW+D+K+
Sbjct: 198 SSEG--SSPDEKGYIGLWKIVVV-KNLPYEDMRRTGKVPKFLSHRLFPNSRYSIWLDSKM 368
Query: 265 KLMVDPLLLIHSLVISENADMAISKHPFYVHTMEEAMATARWKKWWDINALKMQMETYCE 324
+L DP+L+I + A+ AIS H + EE + R K ++ A+ Q Y
Sbjct: 369 RLNSDPMLIIEYFLWRRKAEYAISNHYDRHNVWEEVLQNKRLNK-YNHTAIDEQFNFYQS 545
Query: 325 NGLQPWNPSKL--PYVSDVPDSALILRKHGLGSNLFSCLVFNELEAFNPRDQLAFAFV-- 380
+GL +PSK P S VP+ + I+R H SNLFSCL FNE++ F RDQL+FA+
Sbjct: 546 DGLPKVDPSKPNDPLPSYVPEGSFIIRAHTPMSNLFSCLWFNEVDRFTSRDQLSFAYTYL 725
Query: 381 -RDNMNPK--LKLNMFEVEVFEQVTMEFRH 407
MNP+ +L MF+ + FRH
Sbjct: 726 KLRRMNPERPFQLYMFKDCERRALVKLFRH 815
>TC219357 similar to UP|Q9LNL6 (Q9LNL6) F12K21.12, partial (43%)
Length = 1578
Score = 131 bits (330), Expect = 6e-31
Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 58/330 (17%)
Frame = +1
Query: 138 EVPCGFFKK--------FPISDSDRIAMEKCKNVVVVSAIFNDHDKIRQPKGLGSKTLE- 188
++ CGF K F +++ D + +C ++ V+S IF + D++R P +KT E
Sbjct: 52 QINCGFVKGPEGFQSTGFDLTEDDANYISRC-HIAVISCIFGNSDRLRTPT---TKT*EK 219
Query: 189 -----------------------------------------NVCFFIFIDDITLKRLEHH 207
NVCF +F D+IT++ L
Sbjct: 220 NRFPCKSWVLDAGLHRWEKMDTLILQICKSPSFKVTRLSRKNVCFVMFTDEITIRTLSSE 399
Query: 208 DLISRKSSEYKIGVWRVVKVSKEYLYLNPAMNGVIPKYLVHRLFPNSQFSIWIDAKLKLM 267
+ + IG W++V V K Y + G IPK L HRLFP +++SIW+D+KL+L
Sbjct: 400 GHVPDRMGF--IGFWKLVVV-KNLPYDDMRRVGKIPKLLPHRLFPFARYSIWLDSKLRLQ 570
Query: 268 VDPLLLIHSLVISENADMAISKHPFYVHTMEEAMATARWKKWWDINALKMQMETYCENGL 327
+DPLL++ + + + AIS H + H + E +A + ++ + Q Y +GL
Sbjct: 571 LDPLLILEYFLWRKGYEFAISNH-YDRHCVWEEVARNKKLNKYNHTVIDEQFAFYRADGL 747
Query: 328 QPW---NPSKLPYVSDVPDSALILRKHGLGSNLFSCLVFNELEAFNPRDQLAFAFV---- 380
+ + +P+KL S+VP+ + I+R H SNLFSCL FNE++ F PRDQL+FA
Sbjct: 748 EKFDASDPNKL-LPSNVPEGSFIIRAHTPMSNLFSCLWFNEVDRFTPRDQLSFAHTYQKL 924
Query: 381 -RDNMNPKLKLNMFEVEVFEQVTMEFRHNL 409
R N + LNMF+ + F H L
Sbjct: 925 RRMNPDKPFHLNMFKDCERRHIAKLFHHRL 1014
>TC230345 similar to UP|Q93Z91 (Q93Z91) AT5g42660/MJB21_3, partial (50%)
Length = 1384
Score = 122 bits (305), Expect = 4e-28
Identities = 77/219 (35%), Positives = 124/219 (56%), Gaps = 1/219 (0%)
Frame = +3
Query: 178 QPKGLGSKTLENVCFFIFIDDITLKRLEHHDLISRKSSEYK-IGVWRVVKVSKEYLYLNP 236
QP G+ +L+ VC+ F D+ITLK E L+ R+ E IG WRVV V ++ + +
Sbjct: 9 QPIGVSEASLKKVCYVAFWDEITLKAQE---LVERRIGENGFIGKWRVVVV-RDLPFADQ 176
Query: 237 AMNGVIPKYLVHRLFPNSQFSIWIDAKLKLMVDPLLLIHSLVISENADMAISKHPFYVHT 296
+NG IPK L HRLFP +++SIW+D+K + DPL ++ +L+ N+ +AIS+H
Sbjct: 177 RLNGKIPKMLSHRLFPQAKYSIWVDSKSQFRRDPLGVLEALLWRSNSLLAISEHGARSSV 356
Query: 297 MEEAMATARWKKWWDINALKMQMETYCENGLQPWNPSKLPYVSDVPDSALILRKHGLGSN 356
+EA A + K +++Q+ Y ++GL + + ++++I+RKH +N
Sbjct: 357 YDEAKAVVK-KNKAKPEEVEVQLNQYRKDGLP--EDKRFNGKKALCEASVIVRKHTPVTN 527
Query: 357 LFSCLVFNELEAFNPRDQLAFAFVRDNMNPKLKLNMFEV 395
L C+ FNE+ F RDQL+F +V + +NMF V
Sbjct: 528 LLMCVWFNEVARFTSRDQLSFPYVLWRLKAFKNINMFPV 644
>AI900787
Length = 214
Score = 121 bits (304), Expect = 6e-28
Identities = 55/64 (85%), Positives = 60/64 (92%)
Frame = -3
Query: 315 LKMQMETYCENGLQPWNPSKLPYVSDVPDSALILRKHGLGSNLFSCLVFNELEAFNPRDQ 374
LK QMETYCENGLQPW+P+K PYVSDVPDSALILR+HGLGSNLFSCL+FNEL+AFNPRDQ
Sbjct: 212 LKEQMETYCENGLQPWSPNKQPYVSDVPDSALILRRHGLGSNLFSCLIFNELQAFNPRDQ 33
Query: 375 LAFA 378
L A
Sbjct: 32 LPLA 21
>TC232908 similar to UP|Q9FZ97 (Q9FZ97) F3H9.11 protein, partial (39%)
Length = 725
Score = 61.2 bits (147), Expect(2) = 1e-20
Identities = 27/61 (44%), Positives = 43/61 (70%)
Frame = +2
Query: 218 KIGVWRVVKVSKEYLYLNPAMNGVIPKYLVHRLFPNSQFSIWIDAKLKLMVDPLLLIHSL 277
KIG+WR + V++ Y + G IPK L+HRL PN+++SIW+D KL+L+VDP ++ +
Sbjct: 545 KIGLWRTI-VARNLPYPDARRTGKIPKLLLHRLVPNARYSIWLDGKLELVVDPYQILERV 721
Query: 278 V 278
+
Sbjct: 722 L 724
Score = 56.6 bits (135), Expect(2) = 1e-20
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Frame = +3
Query: 112 GNADSFGGNLSTHLRFSYFDHQNDSTEVPCGFFKK--------FPISDSDRIAMEKCKNV 163
G +D FGG + R FD + T V CGF + F I +D ME+C V
Sbjct: 216 GGSD-FGGYPTLKQRNDSFDIRESMT-VHCGFVRGIKPGRNTGFDIDGADLFEMEQCDGV 389
Query: 164 VVVSAIFNDHDKIRQPKGLGSKTLENVCFFIFIDDITLK 202
VV SAIF + D I +P + + + VCF +F+D+ T K
Sbjct: 390 VVASAIFGNFDVINEPNNISDYSRKTVCFLMFVDEQTEK 506
>AW458639 similar to GP|12060519|db P0475H04.14 {Oryza sativa (japonica
cultivar-group)}, partial (20%)
Length = 357
Score = 71.2 bits (173), Expect = 9e-13
Identities = 41/108 (37%), Positives = 63/108 (57%), Gaps = 1/108 (0%)
Frame = +2
Query: 233 YLNPAMNGVIPKYLVHRLFPNSQFSIWIDAKLKLMVDPLLLIHSLVISENADMAISKHPF 292
Y + NG +PK L+HR+FPN ++SIWID KL+L+VDP +I + +NA AIS+H
Sbjct: 35 YADSRRNGKVPKLLLHRIFPNVRYSIWIDGKLELVVDPYKVIERFLWRQNATFAISRHYR 214
Query: 293 YVHTMEEAMATARWKKWWDINALKMQMETY-CENGLQPWNPSKLPYVS 339
EA A K ++ ++ Q++ Y +GL ++ +KLP S
Sbjct: 215 RFDVFVEAEANKAAGK-YENASIDHQIQFYKYHDGLTHYSRTKLPITS 355
>TC221665 similar to UP|Q94AV6 (Q94AV6) AT4g38500/F20M13_60, partial (32%)
Length = 607
Score = 70.5 bits (171), Expect = 2e-12
Identities = 38/96 (39%), Positives = 58/96 (59%)
Frame = +3
Query: 298 EEAMATARWKKWWDINALKMQMETYCENGLQPWNPSKLPYVSDVPDSALILRKHGLGSNL 357
EEA + R K++ + + ++ Y G++PW+ +K SDVP+ A+I+R+H +NL
Sbjct: 6 EEADSNKRRKRYAR-PLIDLHIKIYYYEGMKPWSSNKKTN-SDVPEGAIIIREHTAINNL 179
Query: 358 FSCLVFNELEAFNPRDQLAFAFVRDNMNPKLKLNMF 393
FSCL FNE+ F PRDQL+F +V + K MF
Sbjct: 180 FSCLWFNEVHLFTPRDQLSFGYVAYRLGDAFKFFMF 287
>BE820328
Length = 728
Score = 63.9 bits (154), Expect = 1e-10
Identities = 30/63 (47%), Positives = 45/63 (70%)
Frame = -2
Query: 325 NGLQPWNPSKLPYVSDVPDSALILRKHGLGSNLFSCLVFNELEAFNPRDQLAFAFVRDNM 384
+GL ++ +KLP SDVP+ +I+R+H +NLF+CL FNE++ F RDQL+F+ VRD +
Sbjct: 655 DGLTHYSRTKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKI 476
Query: 385 NPK 387
K
Sbjct: 475 MAK 467
>BF425821
Length = 387
Score = 57.4 bits (137), Expect = 1e-08
Identities = 37/95 (38%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Frame = +1
Query: 125 LRFSYFDHQNDSTEVPCGFFKK---FPISDSDRIAMEKCKNVVVVSAIFNDHDKIRQPKG 181
L F F ++ V CGF+ F ISD D+ M+ CK VVV + F D + QP G
Sbjct: 97 LCFFIFMQVKETLAVHCGFYSVNGGFKISDEDKSYMQGCK-VVVSTCAFGGGDDLYQPIG 273
Query: 182 LGSKTLENVCFFIFIDDITLKRLEHHDLISRKSSE 216
+ +L+ VC+ F D+ITLK E L+ RK E
Sbjct: 274 MSEASLKKVCYVAFWDEITLKAQE---LVERKIGE 369
>TC222670 similar to UP|Q9FZ97 (Q9FZ97) F3H9.11 protein, partial (13%)
Length = 693
Score = 43.1 bits (100), Expect = 3e-04
Identities = 19/36 (52%), Positives = 27/36 (74%)
Frame = +3
Query: 349 RKHGLGSNLFSCLVFNELEAFNPRDQLAFAFVRDNM 384
R+H SNLF+CL FNE++ F RDQ++F+ VRD +
Sbjct: 3 REHVPISNLFTCLWFNEVDRFTSRDQISFSTVRDKL 110
>TC209579 homologue to UP|Q9FZ97 (Q9FZ97) F3H9.11 protein, partial (10%)
Length = 705
Score = 42.0 bits (97), Expect = 6e-04
Identities = 20/41 (48%), Positives = 29/41 (69%), Gaps = 2/41 (4%)
Frame = +3
Query: 355 SNLFSCLVFNELEAFNPRDQLAFAFVRDNMNPKL--KLNMF 393
SNLF+CL FNE++ F RDQ++F+ VRD + ++ NMF
Sbjct: 18 SNLFACLWFNEVDRFTSRDQISFSTVRDKILSRVDFHFNMF 140
>TC221228 similar to UP|Q93V55 (Q93V55) Male sterility 1 protein, partial
(18%)
Length = 972
Score = 25.0 bits (53), Expect(2) = 1.00
Identities = 22/77 (28%), Positives = 37/77 (47%), Gaps = 5/77 (6%)
Frame = -2
Query: 4 LITISKPLIIQSKLLCFSLFYLFTSLFL-----ALYTISFQSKCLFRSSPFDPIQTSLIS 58
L+ I K ++IQ K + L +T L +L+ KC + P Q S S
Sbjct: 356 LVLIYKNVLIQIKHVLH*LSPSYTCPSLCYS*PSLHYKGTHQKCPLNNIPRLWSQGSSFS 177
Query: 59 YPSSYGEHKYAVSTTRS 75
PSS+ +H + V++T++
Sbjct: 176 EPSSFLQHGFLVTSTQN 126
Score = 24.6 bits (52), Expect(2) = 1.00
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -1
Query: 100 STSSTKMLGYMHGNADSFGGNLSTHLRFSYF 130
+T STK++ M+ A S L THL F
Sbjct: 135 NTKSTKLVSLMYARAASLTSCLETHLNSVLF 43
>TC224258 homologue to UP|CRTI_SOYBN (P28553) Phytoene dehydrogenase,
chloroplast precursor (Phytoene desaturase) , partial
(38%)
Length = 888
Score = 30.8 bits (68), Expect = 1.3
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +3
Query: 258 IWIDAKLKLMVDPLLLIHSLVISENADMAISKHPFY 293
IW D KLK D LL S ++S ADM+++ +Y
Sbjct: 150 IWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYY 257
>TC208996 UP|CRTI_SOYBN (P28553) Phytoene dehydrogenase, chloroplast precursor
(Phytoene desaturase) , complete
Length = 2112
Score = 30.8 bits (68), Expect = 1.3
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +1
Query: 258 IWIDAKLKLMVDPLLLIHSLVISENADMAISKHPFY 293
IW D KLK D LL S ++S ADM+++ +Y
Sbjct: 1231 IWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYY 1338
>BG790810
Length = 419
Score = 30.0 bits (66), Expect = 2.3
Identities = 22/63 (34%), Positives = 32/63 (49%), Gaps = 4/63 (6%)
Frame = -2
Query: 21 SLFYLFTSLFLALYTISFQSKC----LFRSSPFDPIQTSLISYPSSYGEHKYAVSTTRSS 76
S+F + S F + TI QS+ L S+ + +S SYPS+Y + S +SS
Sbjct: 394 SIFPGWLSRFE*VETIVSQSQTSDSSLLSSTSTTSLLSSSTSYPSAYSLQRRITSAAKSS 215
Query: 77 CSS 79
CSS
Sbjct: 214 CSS 206
>TC227625
Length = 1751
Score = 29.6 bits (65), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 3 KLITISKPLIIQSKLLCFSLFYLFTSLFLALYTISFQSKCLF 44
+ I + PL S +CFSLF+ F SL L + F ++ LF
Sbjct: 376 RFILLPAPL---SDSVCFSLFFCFCSLLSTLMILFFSARWLF 260
>TC234212
Length = 680
Score = 29.3 bits (64), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 96 FRKSSTSSTKMLGYMHGNADSFGGNLSTHLRFSYF 130
F SS S+ +G +H N++ +G NL H R F
Sbjct: 266 FTHSSALSSSSIGVVHANSEVYGLNLRFHFRVFLF 370
>TC220322
Length = 1264
Score = 28.9 bits (63), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -1
Query: 320 ETYCENGLQPWNPSKLPY 337
E+YC NG+ W+P LPY
Sbjct: 511 ESYCCNGMSAWHPC*LPY 458
>TC219769
Length = 599
Score = 28.9 bits (63), Expect = 5.0
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = +1
Query: 16 KLLCFSLFYLFTSLFLALYTISFQSKCLFRSS 47
+L+C+++F LF L L ISFQ + FR S
Sbjct: 457 RLICYAIFNLFYFLLLRKPLISFQIETAFRIS 552
>BE475638 similar to PIR|F86281|F86 protein F10B6.14 [imported] - Arabidopsis
thaliana, partial (18%)
Length = 422
Score = 28.9 bits (63), Expect = 5.0
Identities = 15/47 (31%), Positives = 24/47 (50%)
Frame = -1
Query: 61 SSYGEHKYAVSTTRSSCSSPVLFSDYRDVLKEIKNFRKSSTSSTKML 107
+S+ + Y V P+L + + DVL E K+F ST++T L
Sbjct: 386 TSHEDLPYTVKLFHQGFKPPILCATHEDVLNETKHF*GMSTANTMKL 246
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,628,203
Number of Sequences: 63676
Number of extensions: 332729
Number of successful extensions: 2147
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2139
length of query: 456
length of database: 12,639,632
effective HSP length: 100
effective length of query: 356
effective length of database: 6,272,032
effective search space: 2232843392
effective search space used: 2232843392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0265.9