TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0265.3
         (532 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG789506                                                              105  5e-23
TC229071 similar to UP|O76323 (O76323) Synapsin s-syn-long (Frag...    35  0.064
BQ629138                                                               33  0.32
TC207129 homologue to UP|Q84XV9 (Q84XV9) Phosphoribosylformylgly...    32  0.70
TC218615                                                               29  6.0

>BG789506 
          Length = 387

 Score =  105 bits (262), Expect = 5e-23
 Identities = 55/110 (50%), Positives = 73/110 (66%), Gaps = 3/110 (2%)
 Frame = +1

Query: 220 FSKFIKDHY--VENGEVSDAEHVAFLLYWLSAYVFCTKSLRIPAKLLPLANLLHEGRIIA 277
           FSK+I +H   VE  EVSD EHVAFL  WLS YVFCTKSL++  + +P+A  +HEG+   
Sbjct: 13  FSKYIAEHKGSVEE-EVSDEEHVAFLTLWLSHYVFCTKSLQVAKRFIPMALQIHEGQNFG 189

Query: 278 MARLVLGNLYQMINEAIADIRDPK-VASLNAAGPFWLLQLWMNAVFEPSL 326
             RL+L  LY+ + EA  D++  K  +S   +GP WLLQLW+NA FE  +
Sbjct: 190 FGRLLLAVLYESLGEACDDLKKSKDGSSFLVSGPMWLLQLWLNATFEQEM 339


>TC229071 similar to UP|O76323 (O76323) Synapsin s-syn-long (Fragment),
           partial (4%)
          Length = 488

 Score = 35.4 bits (80), Expect = 0.064
 Identities = 20/49 (40%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
 Frame = +2

Query: 68  RPNSLPEGYEH--FHPSIRGDELILAFQPSYRFPFLKDPKRTFRSAPPN 114
           +P+S   GY    F  S R    IL F P Y +PFL+ P +T R   PN
Sbjct: 35  QPSSFINGYTQPLFVASSRLPSFILFFSPKYPYPFLQFPTKTLR*PAPN 181


>BQ629138 
          Length = 453

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 22/65 (33%), Positives = 36/65 (54%)
 Frame = +2

Query: 52  GNLRAILGPLKKAKKGRPNSLPEGYEHFHPSIRGDELILAFQPSYRFPFLKDPKRTFRSA 111
           GN+R  L  +  +K  +  S    ++ +HPS R +ELI AF+   +F F+    R  ++ 
Sbjct: 89  GNIRPALTCIPASKLCKDRSKYVFWDEYHPSDRANELI-AFELIKKFGFV----RVDQTK 253

Query: 112 PPNPS 116
           PP+PS
Sbjct: 254 PPSPS 268


>TC207129 homologue to UP|Q84XV9 (Q84XV9) Phosphoribosylformylglycinamidine
            synthase, complete
          Length = 4134

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 439  LVSRQFRLSQDLPNTLFDKSLILYPGTITKRSVFDTTIGYYNEEELLGLSPFSFTPS 495
            +V ++F  +    NTLF +S+   PG I+  S+  TT    N +  LG+SP +F+ S
Sbjct: 2001 VVKKRFEQTDGKLNTLFRESITSIPGAISSGSLS*TT--RLNLKVFLGMSPRTFSSS 1837


>TC218615 
          Length = 602

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = -1

Query: 403 NLSQHQVELWQTILSPRVLTINFASNDFTLC 433
           NLS H ++LW+T L P   TI   S++ ++C
Sbjct: 587 NLSDHLIKLWETPLLPLX*TIVTESSNSSVC 495


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,834,902
Number of Sequences: 63676
Number of extensions: 442139
Number of successful extensions: 2376
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2375
length of query: 532
length of database: 12,639,632
effective HSP length: 102
effective length of query: 430
effective length of database: 6,144,680
effective search space: 2642212400
effective search space used: 2642212400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)