BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0264.1
(148 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230122 114 2e-26
BF070101 similar to GP|9759603|dbj| dimethylaniline monooxygenas... 81 3e-20
TC206674 similar to UP|FMO3_HUMAN (P31513) Dimethylaniline monoo... 44 4e-05
TC209376 UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxidase, complete 39 7e-04
TC208996 UP|CRTI_SOYBN (P28553) Phytoene dehydrogenase, chloropl... 37 0.003
TC223802 similar to UP|Q9FNA2 (Q9FNA2) Polyamine oxidase, partia... 37 0.005
TC226131 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (86%) 31 0.25
TC217484 28 1.2
BM307041 similar to GP|15809840|gb| AT4g30400/F17I23_260 {Arabid... 28 1.6
TC218585 similar to UP|Q9M427 (Q9M427) Oligouridylate binding pr... 27 3.6
BE806011 27 4.7
BM308408 similar to GP|18491265|gb| At2g46160/T3F17.19 {Arabidop... 27 4.7
TC208265 similar to UP|Q6S7B0 (Q6S7B0) TAF5, partial (36%) 26 6.2
CF921754 26 6.2
TC235075 26 6.2
BG238169 homologue to GP|1877397|emb shaggy-like kinase {Ricinus... 26 8.1
AI495658 homologue to GP|13991921|gb| zeta-carotene desaturase p... 26 8.1
TC226976 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partia... 26 8.1
TC226977 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partia... 26 8.1
>TC230122
Length = 779
Score = 114 bits (285), Expect = 2e-26
Identities = 55/137 (40%), Positives = 86/137 (62%), Gaps = 7/137 (5%)
Frame = +3
Query: 12 KIAIIGAGVSGIAAAKQLSHH--NPIIFEASDSIGGVWRHCSYNSTKLQSHRRDYEFTDF 69
++ IIGAG+SG+ A K + NPI+FE D +GG+WRH + STKLQ++++ ++F DF
Sbjct: 144 RVVIIGAGISGLVACKYVIEFGFNPIVFEVDDGVGGLWRH-TMESTKLQNNKQMFQFMDF 320
Query: 70 PWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRFLGNRVPTEGER----- 124
PW D P+H ++L Y++SYA+HF ++ IRFNSKV++I ++G E +
Sbjct: 321 PWPPSVKEDNPSHKQVLDYVNSYAEHFSLIPYIRFNSKVIDIDYVGGESSEEMKSWELWG 500
Query: 125 DFGSPLPGRPVWEVAVR 141
G P + W +AV+
Sbjct: 501 GNGRPFCSKGTWHIAVQ 551
>BF070101 similar to GP|9759603|dbj| dimethylaniline monooxygenase
(N-oxide-forming)-like protein {Arabidopsis thaliana},
partial (9%)
Length = 382
Score = 81.3 bits (199), Expect(2) = 3e-20
Identities = 35/75 (46%), Positives = 54/75 (71%)
Frame = +2
Query: 41 DSIGGVWRHCSYNSTKLQSHRRDYEFTDFPWHERDNSDFPTHLEILKYLHSYAQHFDVMK 100
+ +GG+WRH + STKLQ+ ++ Y+F DF W D P+H ++L YL+SYA+HF ++
Sbjct: 161 NGVGGLWRH-TIESTKLQNKKQMYQFLDFAWPSSVKEDNPSHEQVLDYLNSYAEHFSLIP 337
Query: 101 NIRFNSKVVEIRFLG 115
IRFNSKV++I ++G
Sbjct: 338 YIRFNSKVIDIDYVG 382
Score = 33.1 bits (74), Expect(2) = 3e-20
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 12 KIAIIGAGVSGIAAAKQLSH--HNPIIFEASD 41
++AIIGAG SG+ A K L NPI+FE +
Sbjct: 67 RVAIIGAGTSGLVACKYLLEFGFNPIVFEVEE 162
>TC206674 similar to UP|FMO3_HUMAN (P31513) Dimethylaniline monooxygenase
[N-oxide-forming] 3 (Hepatic flavin-containing
monooxygenase 3) (FMO 3) (Dimethylaniline oxidase 3)
(FMO form 2) (FMO II) , partial (4%)
Length = 1470
Score = 43.5 bits (101), Expect = 4e-05
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 11 SKIAIIGAGVSGIAAAKQLSHHN--PIIFEASDSIGGVWRHCSYNSTKLQSHRRDYEFTD 68
+K+ IIGAG SGIA A L+ + I+ E D +W+ +Y+ L ++ E
Sbjct: 48 TKVIIIGAGTSGIATAGCLTKQSIPYIMLEREDCFASLWQKYTYDRLHLHLRKQVCELPH 227
Query: 69 FPWHERDNSDFPTHLEILKYLHSYAQHFDV 98
P+ + + + + YL +Y HF++
Sbjct: 228 LPF-PKSYPHYVPRKQFIDYLGNYVNHFEI 314
>TC209376 UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxidase, complete
Length = 1733
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 4 EHNTMFVSKIAIIGAGVSGIAAAKQLSHH--NPIIFEASDSIGGVWRHCS 51
+ N V ++A++GAGVSG+AAA +L H + +FEA GG R S
Sbjct: 42 DDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEAEGRAGGRLRSVS 191
>TC208996 UP|CRTI_SOYBN (P28553) Phytoene dehydrogenase, chloroplast
precursor (Phytoene desaturase) , complete
Length = 2112
Score = 37.4 bits (85), Expect = 0.003
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Frame = +1
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCSYNSTKLQSHRRDYEFTDFP 70
I I GAG++G++ AK L+ H PI+ EA D +GG K+ +
Sbjct: 328 IVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG----------KVAA----------- 444
Query: 71 WHERDNSDFPTHLEILKYLHSYAQHF--DVMKNIRFNSKVVEIRFLGNRVPTEGER-DFG 127
W ++D + T L I + Y Q+ ++ N R K + F P E R DF
Sbjct: 445 WKDKDGDWYETGLHIFFGAYPYVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFP 624
Query: 128 SPLPG--RPVWEVAVRDN 143
LP +W + +R+N
Sbjct: 625 EVLPSPLNGIWAI-LRNN 675
>TC223802 similar to UP|Q9FNA2 (Q9FNA2) Polyamine oxidase, partial (24%)
Length = 425
Score = 36.6 bits (83), Expect = 0.005
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +2
Query: 11 SKIAIIGAGVSGIAAAKQLSHH---NPIIFEASDSIGGVWRHCSYNSTKLQ 58
S + I+GAGVSGI+AAK L+ + + +I EAS+ IGG R ++ ++
Sbjct: 8 SFVIIVGAGVSGISAAKLLAENGVKDLVILEASNCIGGRIRKENFGGVSVE 160
>TC226131 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (86%)
Length = 2250
Score = 30.8 bits (68), Expect = 0.25
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 13 IAIIGAGVSGIAAAKQL--SHHNPIIFEASDSIGG 45
+ +IGAG+SG+AAA+ L + + E+ D +GG
Sbjct: 170 VIVIGAGISGLAAARSLYDASFKVTVLESRDRLGG 274
>TC217484
Length = 1651
Score = 28.5 bits (62), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 42 SIGGVWRHCSYNST 55
S+GG W HC +NST
Sbjct: 884 SVGGFWSHCGWNST 925
>BM307041 similar to GP|15809840|gb| AT4g30400/F17I23_260 {Arabidopsis
thaliana}, partial (4%)
Length = 406
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/44 (36%), Positives = 19/44 (42%)
Frame = -2
Query: 47 WRHCSYNSTKLQSHRRDYEFTDFPWHERDNSDFPTHLEILKYLH 90
W H +NS KL++ E SDFPTHL LH
Sbjct: 282 WAHIQWNSNKLKA-------------ETLYSDFPTHLTFPSLLH 190
>TC218585 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
partial (27%)
Length = 902
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 1/77 (1%)
Frame = -3
Query: 63 DYEFTDFPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRFLGNRVP-TE 121
+Y + W E S P+ LE+ + S+A+ FD+ I + + R +G P T
Sbjct: 546 NYRYIHHTWLEMPQSLRPSKLELGHVVQSFAEEFDLKDQI----QQPDSRPVGADKPTTP 379
Query: 122 GERDFGSPLPGRPVWEV 138
E GS L WEV
Sbjct: 378 QENTLGSSLQ----WEV 340
>BE806011
Length = 410
Score = 26.6 bits (57), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 8/43 (18%)
Frame = +1
Query: 11 SKIAIIGAGVSGIAAAKQLSHHNPI--------IFEASDSIGG 45
S + +IGAG+ G + A L ++P +FE + +GG
Sbjct: 100 SNVCVIGAGIGGSSVAHFLRKYSPASTPSTKIRVFERNGRVGG 228
>BM308408 similar to GP|18491265|gb| At2g46160/T3F17.19 {Arabidopsis
thaliana}, partial (23%)
Length = 435
Score = 26.6 bits (57), Expect = 4.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 61 RRDYEFTDFPWHER 74
RR +EFT PWH R
Sbjct: 176 RRKFEFTSSPWHRR 135
>TC208265 similar to UP|Q6S7B0 (Q6S7B0) TAF5, partial (36%)
Length = 1048
Score = 26.2 bits (56), Expect = 6.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 24 AAAKQLSHHNPIIFEASDSIGGVWRHCS-YNSTKLQSHRRD 63
AA +++ HH+ IF A I + RHC N T + + D
Sbjct: 466 AATREVPHHDCAIFIARCHIATIRRHCQRQNHTPVANENPD 344
>CF921754
Length = 529
Score = 26.2 bits (56), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = +3
Query: 110 EIRFLGNRVPTEGERDFGSPLPGRPVWE 137
+I FLG P EGE P P +P W+
Sbjct: 45 KIFFLGKHTPGEGEPF*KKPPPQKPPWK 128
>TC235075
Length = 519
Score = 26.2 bits (56), Expect = 6.2
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 10 VSKIAIIGAGVSGIAAAK 27
+ + +IGAG+SG+AAA+
Sbjct: 464 IPSVIVIGAGISGLAAAR 517
>BG238169 homologue to GP|1877397|emb shaggy-like kinase {Ricinus communis},
partial (54%)
Length = 492
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 34 PIIFEASDSIGGVWRHCSY 52
PI FEAS G +W C Y
Sbjct: 147 PIYFEASSLCGKLWAQCVY 91
>AI495658 homologue to GP|13991921|gb| zeta-carotene desaturase precursor
{Citrus x paradisi}, partial (11%)
Length = 420
Score = 25.8 bits (55), Expect = 8.1
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 2/30 (6%)
Frame = +3
Query: 12 KIAIIGAGVSGIAAAKQL--SHHNPIIFEA 39
K+AIIGAG++G++ A +L H I+E+
Sbjct: 321 KVAIIGAGLAGMSTAVELLDQGHEVDIYES 410
>TC226976 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial (92%)
Length = 2336
Score = 25.8 bits (55), Expect = 8.1
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 13 IAIIGAGVSGIAAAKQL--SHHNPIIFEASDSIGG 45
+ +IG G++GIAAA+ L + I+ E+ + GG
Sbjct: 376 VIVIGGGMAGIAAARALQDASFQVILLESRERPGG 480
>TC226977 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial (14%)
Length = 629
Score = 25.8 bits (55), Expect = 8.1
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 13 IAIIGAGVSGIAAAKQL--SHHNPIIFEASDSIGG 45
+ +IG G++GIAAA+ L + I+ E+ + GG
Sbjct: 428 VIVIGGGMAGIAAARALQDASFQVILLESRERPGG 532
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,304,496
Number of Sequences: 63676
Number of extensions: 100381
Number of successful extensions: 634
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of query: 148
length of database: 12,639,632
effective HSP length: 88
effective length of query: 60
effective length of database: 7,036,144
effective search space: 422168640
effective search space used: 422168640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0264.1