TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.4
         (180 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922341                                                               46  1e-05
AW706233                                                               29  1.4
TC211040                                                               27  4.0
TC208869 similar to UP|Q7XJ60 (Q7XJ60) At3g47690, partial (54%)        27  4.0
TC219857 similar to UP|Q9LVY7 (Q9LVY7) Cytochrome P450-like, par...    27  5.2
TC226014 similar to UP|O23954 (O23954) Endo-1,4-beta-glucanase (...    27  5.2
TC227770 similar to UP|O04794 (O04794) Acyl-ACP thioesterase, pa...    26  8.9
TC219316                                                               26  8.9

>CF922341 
          Length = 675

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 37/84 (43%)
 Frame = +1

Query: 11  VVREVAIPDNMKSLALEAYSGGTDPKDHLLYFSMKMVISAASDAVKCRMFPSMFKGTAMA 70
           +V  +  P   K L  + Y G T PK+HL  +  KM   A  + +    F     G A+ 
Sbjct: 385 LVPNIITPPKFKVLDFDKYKGTTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLTGVAVT 564

Query: 71  WFTTLPLGSIVKFRDFSSKFLIQF 94
           W+T L    +  ++D    F+ Q+
Sbjct: 565 WYTNLEPSRVHSWKDLMVAFVRQY 636


>AW706233 
          Length = 376

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 13/36 (36%), Positives = 18/36 (49%)
 Frame = -3

Query: 11  VVREVAIPDNMKSLALEAYSGGTDPKDHLLYFSMKM 46
           +V  +  P   K L  + Y G T PK+HL  +  KM
Sbjct: 263 LVXNIISPPKFKVLNFDKYKGTTCPKNHLKMYCQKM 156


>TC211040 
          Length = 951

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 14/44 (31%), Positives = 23/44 (51%)
 Frame = +2

Query: 67  TAMAWFTTLPLGSIVKFRDFSSKFLIQFSASKIKQVTIDDLYNV 110
           T  +W  TLP+ +++  R    K L+    S +K+  +  LYNV
Sbjct: 737 TQGSWQNTLPVLTLLDLRHILFKSLVNNDKSGLKKQMMTKLYNV 868


>TC208869 similar to UP|Q7XJ60 (Q7XJ60) At3g47690, partial (54%)
          Length = 982

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 27/95 (28%), Positives = 42/95 (43%), Gaps = 9/95 (9%)
 Frame = +2

Query: 40  LYFSMKMVISAASDAVKCRMFPSMFKGTAMAWFTTLPLGSIVKFRDFSSKFLIQ------ 93
           L+ ++  +  AAS AV+C+M    F G        +P+   V F   +   +IQ      
Sbjct: 74  LHLNLSRIEEAASGAVQCQMMDMTFPG-------VVPMHK-VNFDAKTEYDMIQNYKILQ 229

Query: 94  --FSASKI-KQVTIDDLYNVRQLERETLKQYVKRY 125
             F+  KI K V +  L   R L+     Q++KRY
Sbjct: 230 DVFNKLKIDKHVEVSRLVKGRPLDNLEFLQWLKRY 334


>TC219857 similar to UP|Q9LVY7 (Q9LVY7) Cytochrome P450-like, partial (36%)
          Length = 1146

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +2

Query: 29  YSGGTDPKDHLLYFSMKMVISAASDAVKCRMF-PSMFKGTAMAWFTTLPLG---SIVKFR 84
           + G + PK   LY+S            +   F PS F+GT  A +T +P G   S+   +
Sbjct: 509 FDGFSIPKGWKLYWSANSTHKNPEYFPEPEKFDPSRFEGTGPAPYTYVPFGGGPSMCPGK 688

Query: 85  DFSSKFLIQFSASKIKQVTIDDLY 108
           +++   L+ F  + +K+   + L+
Sbjct: 689 EYARMELLVFMHNLVKRFKCETLF 760


>TC226014 similar to UP|O23954 (O23954) Endo-1,4-beta-glucanase (Fragment) ,
           partial (41%)
          Length = 917

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 36  KDHLLYFSMKMVISAASDAVKCRMFPSMFKGTAMA 70
           K HLLYFS  + + +  D V    F ++++ T  A
Sbjct: 761 KSHLLYFSTALDVFSVFDVVSFAAFCNLYRETVCA 865


>TC227770 similar to UP|O04794 (O04794) Acyl-ACP thioesterase, partial (56%)
          Length = 1174

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 10/26 (38%), Positives = 18/26 (68%)
 Frame = +3

Query: 155 NKLSRKLARSMTEVRAQANTYILDEE 180
           NKL+R+L++   EVR +  +Y +D +
Sbjct: 225 NKLTRRLSKIPEEVRQEIGSYFVDSD 302


>TC219316 
          Length = 725

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = -2

Query: 142 RAFKDGLLPGKLNNKLSRKLARSMTEVRAQ 171
           RAF  G +PG++ N     + R+MTE R Q
Sbjct: 418 RAFPLGGVPGRIPNTTVLHINRAMTEFRRQ 329


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,646,180
Number of Sequences: 63676
Number of extensions: 57535
Number of successful extensions: 307
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of query: 180
length of database: 12,639,632
effective HSP length: 91
effective length of query: 89
effective length of database: 6,845,116
effective search space: 609215324
effective search space used: 609215324
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)