BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0262.11
(581 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226736 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich prot... 41 0.001
TC209534 weakly similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific... 38 0.014
TC214075 similar to UP|P93014 (P93014) 30S ribosomal protein S5,... 37 0.019
TC205462 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MS... 37 0.032
TC215882 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (57%) 37 0.032
TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MS... 36 0.054
TC215881 homologue to UP|Q8CBU4 (Q8CBU4) Mus musculus adult male... 34 0.16
TC216316 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {A... 34 0.16
TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-li... 34 0.21
TC206057 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin, d... 34 0.21
TC226738 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-ri... 34 0.21
TC227575 UP|PHYB_SOYBN (P42499) Phytochrome B, complete 33 0.27
BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber... 33 0.27
BI942709 similar to PIR|T11021|T11 farnesyltranstransferase (EC ... 33 0.35
TC219587 similar to PIR|T49181|T49181 cyclophylin-like protein -... 33 0.35
TC206213 similar to UP|PMXA_MOUSE (Q62066) Paired mesoderm homeo... 33 0.35
AI736704 33 0.46
TC209550 similar to UP|GGPP_ARATH (P34802) Geranylgeranyl pyroph... 33 0.46
BM107821 weakly similar to SP|Q04503|DP87_ Prespore protein DP87... 32 0.78
TC228874 similar to GB|BAB09857.1|9759402|AB008268 phi-1-like pr... 30 2.3
>TC226736 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein, partial
(63%)
Length = 1243
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +2
Query: 334 PLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGR 384
P+PR S R P PR+RA +P R R D Y R G +P RRR GR
Sbjct: 392 PVPRRAGSPRRPDSPRRRADSPVRRRVDSPYRR---GGDTPPRRRPVSPGR 535
Score = 37.7 bits (86), Expect = 0.014
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Frame = +2
Query: 338 SPTSRRSPTPPRQRARTPPRHRTDDRYCRAP---QNGRSPDRR------RSFD--RGRIP 386
SP RRSP PP +R P R R+ R R+P + RSP RR RSF RGR P
Sbjct: 605 SPGRRRSPPPPPRRRSPPRRPRSPPR--RSPIGRRRTRSPIRRSARSRSRSFSPRRGRPP 778
Query: 387 DRHGR 391
R GR
Sbjct: 779 VRRGR 793
>TC209534 weakly similar to UP|Q7M4A3 (Q7M4A3) Spermatid-specific protein T2
precursor, partial (22%)
Length = 685
Score = 37.7 bits (86), Expect = 0.014
Identities = 32/84 (38%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 300 DNNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSR--RS-PTPPRQRARTPP 356
D D + +K+ + + GR + LS LPLPRS T+R RS P P + R R P
Sbjct: 21 DGE*DGVIGVKESGEESVELGRF*LSMRLSL--LPLPRSHTARLRRSVPLPTQNRLRLHP 194
Query: 357 R-HRTDDRYCRAPQNGRSPDRRRS 379
R H T AP RS RRS
Sbjct: 195 RQHHTPSHSKLAPHTSRSDPNRRS 266
>TC214075 similar to UP|P93014 (P93014) 30S ribosomal protein S5, partial
(76%)
Length = 1140
Score = 37.4 bits (85), Expect = 0.019
Identities = 25/66 (37%), Positives = 32/66 (47%), Gaps = 8/66 (12%)
Frame = -2
Query: 334 PLPRSPTSRRSPTPPRQRART----PPRHRTDDRYCRAPQN----GRSPDRRRSFDRGRI 385
P P SP +R SP+P +R RT P + R CR P++ GR RRR R R
Sbjct: 497 PAPPSPRTRPSPSPSWRRTRTRSLSSPSRPSRTRRCRGPRHRCSRGRRAPRRRRRFRPRS 318
Query: 386 PDRHGR 391
P+ R
Sbjct: 317 PEGRRR 300
>TC205462 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;} , partial (54%)
Length = 1403
Score = 36.6 bits (83), Expect = 0.032
Identities = 23/58 (39%), Positives = 31/58 (52%), Gaps = 4/58 (6%)
Frame = +3
Query: 334 PLPRSPTSRRSPTPPR----QRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPD 387
P RSP+ RRSP+P R QR+ +P + + ++GRSP R RGR PD
Sbjct: 678 PARRSPSPRRSPSPQRSTSPQRSPSPRKSPRGESPANRSRDGRSPTPRSVSPRGR-PD 848
Score = 34.7 bits (78), Expect = 0.12
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Frame = +3
Query: 344 SPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQI 403
SP R R+R+P + DD R + R R RS+DR GRD+ R ++
Sbjct: 417 SPRSRRSRSRSPRKRHRDDYKDR---DYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRS 587
Query: 404 SVGSIAG---GFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQKVT 449
+ G G S SR S+ A P PR S PS Q+ T
Sbjct: 588 ASLDYKGRGRGRYDDERNSRSRSRSVDSGSPARRSPSPRRS-PSPQRST 731
Score = 32.3 bits (72), Expect = 0.60
Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Frame = +3
Query: 338 SPTSRRSPT-PPRQRARTP---------PRHRTDDRYCRAPQNGRSPD-RRRSFDRGRIP 386
SP SRRS + PR+R R R R+ DRY R GR D RRRS R
Sbjct: 417 SPRSRRSRSRSPRKRHRDDYKDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASL 596
Query: 387 DRHGR------DEVIRHHRMNQISVGSIAGGFAAGGHTSNSRKSSI*VIMSAMGRPRPRH 440
D GR DE R + GS A + + + ++S+ S P PR
Sbjct: 597 DYKGRGRGRYDDERNSRSRSRSVDSGSPARRSPSPRRSPSPQRST-----SPQRSPSPRK 761
Query: 441 S 441
S
Sbjct: 762 S 764
>TC215882 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (57%)
Length = 1128
Score = 36.6 bits (83), Expect = 0.032
Identities = 29/81 (35%), Positives = 36/81 (43%), Gaps = 3/81 (3%)
Frame = -3
Query: 334 PLPRSPTSRRSPTPPRQRART--PPRHRTDDRYCRAPQNGRSPD-RRRSFDRGRIPDRHG 390
P P +P + SP PPR RAR+ P R R R P +P +RR+ R R G
Sbjct: 631 PKP*TPPTLTSPAPPRMRARSSGPDPPRPPPRGSRRPLAPPAPSAKRRTARRHRRSGGGG 452
Query: 391 RDEVIRHHRMNQISVGSIAGG 411
R R R + GS GG
Sbjct: 451 RRGARRARRRRRRRRGSAGGG 389
>TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;} , partial (69%)
Length = 1148
Score = 35.8 bits (81), Expect = 0.054
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Frame = +3
Query: 344 SPTPPRQRARTP-PRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQ 402
SP R R+R+P RHR D R ++ R R RS+DR GRD+ R ++
Sbjct: 420 SPRSRRSRSRSPRKRHRDDYR----DRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSR 587
Query: 403 ISVGSIAG---GFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQKVT 449
+ G G S SR S+ A P PR S PS Q+ T
Sbjct: 588 SASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRS-PSPQRST 734
Score = 33.5 bits (75), Expect = 0.27
Identities = 22/58 (37%), Positives = 29/58 (49%), Gaps = 4/58 (6%)
Frame = +3
Query: 334 PLPRSPTSRRSPTPPR----QRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPD 387
P RSP+ RRSP+P R QR+ +P + + + RSP R RGR PD
Sbjct: 681 PARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSREERSPTPRSVSPRGR-PD 851
>TC215881 homologue to UP|Q8CBU4 (Q8CBU4) Mus musculus adult male urinary
bladder cDNA, RIKEN full-length enriched library,
clone:9530007N19 product:villin 2, full insert sequence.
(Fragment), partial (5%)
Length = 1049
Score = 34.3 bits (77), Expect = 0.16
Identities = 29/79 (36%), Positives = 34/79 (42%), Gaps = 3/79 (3%)
Frame = -2
Query: 336 PRSPTSRRSPTPPRQRART--PPRHRTDDRYCRAPQNGRSPD-RRRSFDRGRIPDRHGRD 392
P +P + SP PPR RAR P R R R P +P +RRS R R GR
Sbjct: 571 P*TPPTPTSPAPPRIRARCLGPDPPRPPPRGSRRPPAPPAPSAKRRSARRRRRSGGGGRR 392
Query: 393 EVIRHHRMNQISVGSIAGG 411
R R + GS GG
Sbjct: 391 GARRARRRRRRRRGSAGGG 335
>TC216316 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Arabidopsis
thaliana;} , partial (97%)
Length = 1507
Score = 34.3 bits (77), Expect = 0.16
Identities = 52/199 (26%), Positives = 74/199 (37%), Gaps = 2/199 (1%)
Frame = +1
Query: 220 KAPEWAKDPGDTTRIRESRRKNQDEKKPKRKRYENYAPLNSLSQILRERASTDLRDRPPP 279
K PE + PGD R+ R Q + P +R+ R+ LR R PP
Sbjct: 124 KLPE--RGPGDR---RDGHRGQQPRRDPPSRRHPR-------------RSMEGLRRRTPP 249
Query: 280 MLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSP 339
++ + C H P ++ R RL + V D PL RS
Sbjct: 250 P----SAVERRPSCRVH--PVRRLRSRRRRSQTLRPNRRHSRLLRVV-----DQPLHRSR 396
Query: 340 TSR--RSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRH 397
R R R R P R ++ R +PDRR++ R +R
Sbjct: 397 KLRS*RRYVTERASRRYPQRPQSPPRV--------TPDRRQALHR-----------TLRI 519
Query: 398 HRMNQISVGSIAGGFAAGG 416
HR ++IS S+ GG+AA G
Sbjct: 520 HRQDRIS*TSLRGGYAAFG 576
>TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-like protein,
partial (49%)
Length = 1255
Score = 33.9 bits (76), Expect = 0.21
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Frame = +3
Query: 336 PRSPTSRRSPTPPRQRART-------PPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDR 388
P TSR++ TP R R PP+HR + + P R P R S D + P R
Sbjct: 15 PLKKTSRKTHTPKPNRCRLRSPKTPPPPQHRRRPKSAKRPPRRRPPSWRSSADARKSPPR 194
>TC206057 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin,
delta-subunit, complete
Length = 1930
Score = 33.9 bits (76), Expect = 0.21
Identities = 33/99 (33%), Positives = 37/99 (37%), Gaps = 30/99 (30%)
Frame = +1
Query: 334 PLPRSPTSRRSPTPP---RQRARTPPRHRTDDRYCR-----------APQNGRSP----- 374
PLPR P RR PP R+ R RH R R Q GR P
Sbjct: 430 PLPRHPPHRRLRRPPQGCREGRRRSHRHGRPRRALRPRLPREVRQHIPQQQGRQPILHAP 609
Query: 375 ----DRRRSFDRGRIPDRHG-------RDEVIRHHRMNQ 402
RRRS RG RHG R+E RH R ++
Sbjct: 610 RSPRRRRRSLRRGCPQARHGRSPRCQDREETRRHRRRHR 726
>TC226738 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein,
partial (24%)
Length = 486
Score = 33.9 bits (76), Expect = 0.21
Identities = 23/58 (39%), Positives = 27/58 (45%), Gaps = 7/58 (12%)
Frame = +3
Query: 334 PLPRSPTSRRSPTPPRQ-------RARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGR 384
P+PR S R P PR+ RA +P R R D Y R G +P RRR GR
Sbjct: 159 PVPRRAGSPRRPDSPRRRADSPRRRADSPVRRRLDSPYRR---GGDTPPRRRPVSPGR 323
Score = 29.3 bits (64), Expect = 5.1
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +3
Query: 331 GDLPLPRSPTSR---RSPTPPRQRARTPPRHRTDDRYCRAPQNGRS---PDRRRS 379
GD P R P S RSP+PPR R R+P R + R +P RS P RRRS
Sbjct: 282 GDTPPRRRPVSPGRGRSPSPPR-RLRSPAR-LSPRRIRGSPGRRRSPPPPPRRRS 440
>TC227575 UP|PHYB_SOYBN (P42499) Phytochrome B, complete
Length = 4095
Score = 33.5 bits (75), Expect = 0.27
Identities = 24/74 (32%), Positives = 37/74 (49%)
Frame = +3
Query: 333 LPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRD 392
+P P+ TSR PP+Q+ + +HR ++ RA GR P R R+ R R
Sbjct: 33 VPPPQIHTSRTKTEPPQQQQQ--QQHRLHEQGHRAVHGGRGPRRLRAVRRVR-------- 182
Query: 393 EVIRHHRMNQISVG 406
EV++ R+N +G
Sbjct: 183 EVLQLLRINPHRIG 224
>BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber, partial
(42%)
Length = 450
Score = 33.5 bits (75), Expect = 0.27
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = +1
Query: 82 LLPVFPHELGKRANKLVPEPPSRLPPHLGRGDGKLPL 118
+LP+FPH+L + AN P+P + P G GK+ +
Sbjct: 55 ILPLFPHQLIQVANMAFPDPSMSVSPQRKMGRGKIEI 165
>BI942709 similar to PIR|T11021|T11 farnesyltranstransferase (EC 2.5.1.29) -
white lupine, partial (32%)
Length = 421
Score = 33.1 bits (74), Expect = 0.35
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 342 RRSPTPPRQR-ARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHG 390
R SP PPR+R AR PPR + R CR + R S RG R G
Sbjct: 351 RASPWPPRRRRARRPPRTKPASRACRRRGASTASPRGSSAARGAKRRRRG 202
>TC219587 similar to PIR|T49181|T49181 cyclophylin-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (19%)
Length = 1344
Score = 33.1 bits (74), Expect = 0.35
Identities = 38/140 (27%), Positives = 50/140 (35%), Gaps = 14/140 (10%)
Frame = +1
Query: 337 RSPTSR-RSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVI 395
RSP R RSP R R R R R+P G DR RS R P R I
Sbjct: 706 RSPPRRFRSPPGGRNRPRYQSRRSRSRSNSRSPVRGHFSDRDRSRSPRRSPSPEDRRPPI 885
Query: 396 RHHRMNQISVGSIAGGFAAGGHTSNSRKSSI*VIMS-------------AMGRPRPRHSE 442
+++ S G S SR + S ++ R R R S
Sbjct: 886 SDQLKSRLGPRSDERLPDRGRSKSKSRSNGSSCSRSPDATPPKRYDKRTSVSRSRSRSSS 1065
Query: 443 PSRQKVTIWFSDDDYDTYTG 462
PS Q+ + + D D+ +G
Sbjct: 1066PSGQRGLVSYGDASPDSGSG 1125
>TC206213 similar to UP|PMXA_MOUSE (Q62066) Paired mesoderm homeobox protein
2A (Paired-like homeobox 2A) (PHOX2A homeodomain
protein) (Aristaless homeobox protein homolog), partial
(8%)
Length = 930
Score = 33.1 bits (74), Expect = 0.35
Identities = 29/94 (30%), Positives = 38/94 (39%), Gaps = 6/94 (6%)
Frame = +1
Query: 316 LIRAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPD 375
++R L + L LPR P RR PPR P R R R P+ R+P
Sbjct: 244 VVRRAALRQPAGLQALRQELPRHPRRRRCRDPPRGPRDLRPPCRRQHRAPRRPRR-RAPR 420
Query: 376 RRRSFDRGR-----IPDRHGRDEVIRH-HRMNQI 403
R R R +P RH +RH HR ++
Sbjct: 421 HRLQHGRRRPPPLQLPLRHHPPPPLRHRHRRRRV 522
>AI736704
Length = 423
Score = 32.7 bits (73), Expect = 0.46
Identities = 22/57 (38%), Positives = 28/57 (48%), Gaps = 6/57 (10%)
Frame = +2
Query: 342 RRSPTPPRQRARTPPRHRTDD------RYCRAPQNGRSPDRRRSFDRGRIPDRHGRD 392
RR P PP Q PRH + R+ RAPQ+ R R RS ++ R R GR+
Sbjct: 80 RRHPPPPPQ---LDPRHPDAEVSFHRRRHSRAPQSRREEKRARSSEKKREQLRRGRE 241
>TC209550 similar to UP|GGPP_ARATH (P34802) Geranylgeranyl pyrophosphate
synthetase, chloroplast precursor (GGPP synthetase)
(GGPS) [Includes: Dimethylallyltranstransferase ;
Geranyltranstransferase ; Farnesyltranstransferase ] ,
partial (19%)
Length = 509
Score = 32.7 bits (73), Expect = 0.46
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 337 RSPTSRRSPTP-PRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHG 390
R R SP P R+RARTPPR R CR + R S+ RG R G
Sbjct: 506 RGRRRRASPWPRARRRARTPPRIAQGARACRRRGASTASPRGSSWARGAKRSRRG 342
>BM107821 weakly similar to SP|Q04503|DP87_ Prespore protein DP87 precursor.
[Slime mold] {Dictyostelium discoideum}, partial (8%)
Length = 592
Score = 32.0 bits (71), Expect = 0.78
Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Frame = +3
Query: 334 PLPRSPTSRRSPTPPRQRARTPPRH-RTDDRYCRAPQNGRSPDRRRSFDR----GRIPDR 388
P R+ T RR P PP + R PPR R R+ R P P R S R G P
Sbjct: 273 PPLRARTLRRVPPPPHRLRRQPPRRLRRLQRHHRRPPXPXPPPLRPSIRRXTLXGVXPXA 452
Query: 389 HGRDEVIRHHRMNQISV 405
H R HR + SV
Sbjct: 453 HCR------HRNSXASV 485
>TC228874 similar to GB|BAB09857.1|9759402|AB008268 phi-1-like protein
{Arabidopsis thaliana;} , partial (37%)
Length = 615
Score = 30.4 bits (67), Expect = 2.3
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -2
Query: 336 PRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRD 392
P SP +R S PR+R PP +R R P G P R+ P H D
Sbjct: 308 PTSPAARTSGRAPRRRCSLPPSRSPPERSRRNP--GTPPSRKSRCTPTPPPAXHSPD 144
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.142 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,346,433
Number of Sequences: 63676
Number of extensions: 399814
Number of successful extensions: 4848
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 4186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4761
length of query: 581
length of database: 12,639,632
effective HSP length: 102
effective length of query: 479
effective length of database: 6,144,680
effective search space: 2943301720
effective search space used: 2943301720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0262.11