TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.10
         (145 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC207529 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial...   263  3e-71
TC220972 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial...   102  6e-23
TC205106 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (33%)           28  1.2
TC205108 homologue to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (7%)          27  2.6
TC233919 similar to UP|Q8VXV2 (Q8VXV2) At2g5740/F3N11.19, partia...    27  3.4
CA853305                                                               27  3.4
TC216945 similar to UP|Q43854 (Q43854) Peroxidase precursor  , p...    26  5.9
TC207478 similar to UP|Q6R567 (Q6R567) Ring domain containing pr...    26  7.7

>TC207529 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial (82%)
          Length = 1265

 Score =  263 bits (671), Expect = 3e-71
 Identities = 128/145 (88%), Positives = 134/145 (92%)
 Frame = +1

Query: 1   MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
           MKTP S FYRNPVKFRMPTAENLVPIRLDIEI+ +RYKDAFTWNPSDPD EV VFA+RTV
Sbjct: 79  MKTPISGFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDAFTWNPSDPDSEVVVFAKRTV 258

Query: 61  KDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDL 120
           KDLKLPP FVTQIAQSI+SQL+EFRSYEGQDMYAGEKI+PIKLDL VNH LVKDQFLWDL
Sbjct: 259 KDLKLPPAFVTQIAQSIQSQLSEFRSYEGQDMYAGEKIVPIKLDLRVNHTLVKDQFLWDL 438

Query: 121 NNFESDLEELARIFCKDMGIEDPEV 145
           NNFESD EE ARIFCKD GIEDPEV
Sbjct: 439 NNFESDPEEFARIFCKDTGIEDPEV 513


>TC220972 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial (22%)
          Length = 850

 Score =  102 bits (254), Expect = 6e-23
 Identities = 50/81 (61%), Positives = 59/81 (72%)
 Frame = +1

Query: 65  LPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFE 124
           + P  V+Q     +SQ AEFRSYEGQ MY GEKI+PIKLDLCVNH LVKDQFLWDL+NFE
Sbjct: 403 IQPGQVSQNQNFEQSQFAEFRSYEGQVMYVGEKIVPIKLDLCVNHTLVKDQFLWDLDNFE 582

Query: 125 SDLEELARIFCKDMGIEDPEV 145
           SD EE A+I  +   +  P +
Sbjct: 583 SDHEEFAKISTRTRALNIPRL 645



 Score = 29.3 bits (64), Expect = 0.69
 Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
 Frame = +1

Query: 17  MPTAENLVPIRLDIEIDAKRYKDAFTWNPS--DPDHEVGVFARRTVKDLKLP 66
           M   E +VPI+LD+ ++    KD F W+    + DHE         + L +P
Sbjct: 484 MYVGEKIVPIKLDLCVNHTLVKDQFLWDLDNFESDHEEFAKISTRTRALNIP 639


>TC205106 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (33%)
          Length = 1796

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 36   RYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPP 68
            R K  F WN  D  H V  F++    +LKLPPP
Sbjct: 1441 RGKKMFAWNGKD-HHVVKQFSQVPYLELKLPPP 1346


>TC205108 homologue to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (7%)
          Length = 614

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 41  FTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQ-SIESQLAEFRSYEGQDM 92
           F WN  D  H V  F++    +LKLPPP     ++ ++ +Q ++  +   +D+
Sbjct: 338 FAWNGKD-HHVVKQFSQVPYLELKLPPPLCCACSEITVRAQTSQVLAISPRDI 183


>TC233919 similar to UP|Q8VXV2 (Q8VXV2) At2g5740/F3N11.19, partial (5%)
          Length = 414

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 47  DPDHEVGVFARRTVKDLKLPPPFVTQIAQSIESQLAEFRSYEG 89
           DPD E  +F  +   D  LPPP   +   + ++ +A   +Y G
Sbjct: 205 DPDEEYALFLSQYHSDASLPPPSSAEF--NFDTYIAPLHTYLG 327


>CA853305 
          Length = 464

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 89  GQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEEL 130
           G+ +++     PI   LC+ H L KD+ L+    FE DL  +
Sbjct: 19  GEIVHSKSMTSPIDYVLCIGHFLGKDEDLYSF--FEPDLPSI 138


>TC216945 similar to UP|Q43854 (Q43854) Peroxidase precursor  , partial (96%)
          Length = 1274

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 59  TVKDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLW 118
           TV D++ P  F  +    + ++   F S   QD+Y   +   I  D  VN  L  D+F++
Sbjct: 746 TVLDIRSPNTFDNKYYVDLMNRQGLFTS--DQDLYTNTRTKGIVTDFAVNQSLFFDKFVF 919


>TC207478 similar to UP|Q6R567 (Q6R567) Ring domain containing protein,
           partial (51%)
          Length = 1103

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/24 (41%), Positives = 18/24 (74%)
 Frame = -3

Query: 97  KIIPIKLDLCVNHMLVKDQFLWDL 120
           KII I++ +CV+H++ KD  ++ L
Sbjct: 747 KIIRIRVCICVSHLVPKDPCIYHL 676


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,005,179
Number of Sequences: 63676
Number of extensions: 69382
Number of successful extensions: 286
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of query: 145
length of database: 12,639,632
effective HSP length: 88
effective length of query: 57
effective length of database: 7,036,144
effective search space: 401060208
effective search space used: 401060208
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)