BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0260.2
(694 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 384 e-107
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 383 e-106
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 181 1e-45
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 165 7e-41
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 162 4e-40
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 157 1e-38
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 155 6e-38
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 146 3e-35
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 145 8e-35
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 139 4e-33
BM307983 135 6e-32
CO982036 132 5e-31
BM086359 128 1e-29
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 116 4e-28
BU764568 98 4e-27
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 117 2e-26
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 87 4e-26
BU549979 115 5e-26
BU548243 115 8e-26
BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sat... 112 6e-25
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 384 bits (987), Expect = e-107
Identities = 229/684 (33%), Positives = 364/684 (52%), Gaps = 1/684 (0%)
Frame = +1
Query: 10 FGSLCYASTLNRNRTKLDPRAQKCVFIGYRHGTKGFLLFDIKSREVLLSRHVLFHETEFP 69
FGS CY R K+DP++ +F+GY ++ + +F+ ++R V+ S +V+ + P
Sbjct: 2764 FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLS-P 2940
Query: 70 FKTMEHTLDPCASVSLPSFMGSEALDYTPLPQGQTPDPQPQVPEVLPVPQTATRHSTRSR 129
+ + D S G D G+ + + + Q R STR +
Sbjct: 2941 ARKKDVEEDVRTS-------GDNVADAAK--SGENAENSDSATDESNINQPDKRSSTRIQ 3093
Query: 130 RVPSHFHDYQLALPSSIAALNSSSKVSSTGIKHPLSSVLSYTNLSPKHYAFTTNVSSTVE 189
++ H +L + + + S+ + S +E
Sbjct: 3094 KM----HPKELIIGDPNRGVTTRSR--------------------EVEIVSNSCFVSKIE 3201
Query: 190 PTTYTQAAQCKEWRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWVYRVKHKQDGSIDR 249
P +A + W +AM +ELE RN W +V P IG KW+++ K ++G I R
Sbjct: 3202 PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITR 3381
Query: 250 YKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLDVDNAFLHGTLD 309
KARLVA+GYTQ+EG+D+ +TF+PVA+ ++RLLL +A + L+Q+DV +AFL+G L+
Sbjct: 3382 NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLN 3561
Query: 310 EEIYMRLPPGVSSP-RPNQVCLLQKSLYGLKQASRQWYNTLVAALKSLGYEQCPHDHTLL 368
EE+Y+ P G + P P+ V L+K+LYGLKQA R WY L L GY + D TL
Sbjct: 3562 EEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLF 3741
Query: 369 LKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKFFLGLEVARSAK 428
+K+ + ++ +YVDD++ G S E ++ + S+F + +G+L +FLGL+V +
Sbjct: 3742 VKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMED 3921
Query: 429 GICLTQRKYALELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDPTSYRRLVGRLLYLT 488
I L+Q +YA ++ G+ RTP + L LS+ D + YR ++G LLYLT
Sbjct: 3922 SIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLT 4101
Query: 489 TTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATASLKLQAYSDSD 548
+RPD+ Y V ++Y A+P H R+L+YV G G+ + ++ L Y D+D
Sbjct: 4102 ASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDAD 4281
Query: 549 WAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQ 608
WAG D R+S +G +LG++LISW +KKQ VS S++EAEY A + ++ W+ + +
Sbjct: 4282 WAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 4461
Query: 609 FLHLRVPFPVPLFCDNQSAIHIAQNPTFHERTKHIELDCHVVRTKLQAGLIHLLPVSTRD 668
++ + L+CDN SAI+I++NP H RTKHI++ H +R + +I L V T +
Sbjct: 4462 EYNVEQDV-MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEE 4638
Query: 669 QLADIFTKPLPPSLFPTFVLKLGL 692
Q+ADIFTK L + F KLG+
Sbjct: 4639 QIADIFTKALDANQFEKLRGKLGI 4710
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 383 bits (983), Expect = e-106
Identities = 235/695 (33%), Positives = 364/695 (51%), Gaps = 12/695 (1%)
Frame = +1
Query: 10 FGSLCYASTLNRNRTKLDPRAQKCVFIGYRHGTKGFLLFDIKSREVLLSRHVLFHE-TEF 68
FGS CY R K+DP++ +F+GY ++ + +F+ ++R V+ S +V+ + T
Sbjct: 2767 FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPA 2946
Query: 69 PFKTMEHTL----DPCASVSLPSFMGSEALDYTPLPQGQTPDPQPQV------PEVLPVP 118
K +E + D A + + + T P PD +P + P+ L +
Sbjct: 2947 RKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIG 3126
Query: 119 QTATRHSTRSRRVPSHFHDYQLALPSSIAALNSSSKVSSTGIKHPLSSVLSYTNLSPKHY 178
+TRSR I +++S VS
Sbjct: 3127 DPNRGVTTRSRE---------------IEIVSNSCFVSK--------------------- 3198
Query: 179 AFTTNVSSTVEPTTYTQAAQCKEWRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWVYR 238
+EP +A + W +AM +ELE RN W +V P IG KW+++
Sbjct: 3199 ---------IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFK 3351
Query: 239 VKHKQDGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLD 298
K ++G I R KARLVA+GYTQ+EG+D+ +TF+PVA+ ++RLLL +A + L+Q+D
Sbjct: 3352 NKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMD 3531
Query: 299 VDNAFLHGTLDEEIYMRLPPGVSSP-RPNQVCLLQKSLYGLKQASRQWYNTLVAALKSLG 357
V +AFL+G L+EE Y+ P G P P+ V L+K+LYGLKQA R WY L L G
Sbjct: 3532 VKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 3711
Query: 358 YEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKF 417
Y + D TL +K+ + ++ +YVDD++ G S E ++ + S+F + +G+L +
Sbjct: 3712 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 3891
Query: 418 FLGLEVARSAKGICLTQRKYALELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDPTSY 477
FLGL+V + I L+Q KYA ++ G+ RTP + L LS+ D + Y
Sbjct: 3892 FLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLY 4071
Query: 478 RRLVGRLLYLTTTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATA 537
R ++G LLYLT +RPD+ Y V ++Y A+P H R+L+YV G G+ + +
Sbjct: 4072 RSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS 4251
Query: 538 SLKLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIV 597
L Y D+DWAG D R+S +G +LG++LISW +KKQ VS S++EAEY A +
Sbjct: 4252 DSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSC 4431
Query: 598 CEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTFHERTKHIELDCHVVRTKLQAG 657
++ W+ + + ++ + L+CDN SAI+I++NP H RTKHI++ H +R +
Sbjct: 4432 SQLVWMKQMLKEYNVEQDV-MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDK 4608
Query: 658 LIHLLPVSTRDQLADIFTKPLPPSLFPTFVLKLGL 692
+I L V T +Q+ADIFTK L + F KLG+
Sbjct: 4609 VITLEHVDTEEQIADIFTKALDANQFEKLRGKLGI 4713
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
(16%)
Length = 662
Score = 181 bits (459), Expect = 1e-45
Identities = 97/182 (53%), Positives = 130/182 (71%), Gaps = 4/182 (2%)
Frame = +3
Query: 515 AATRVLRYVKGAPGQGLFFSATASLKLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWR 574
AATRVL+Y+KG P +GL FS + +++ +SD+DWA C D+ +SI Y FLGSSLISW+
Sbjct: 18 AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197
Query: 575 TKKQTTVSR--SSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIH-IA 631
KKQ TVSR SSSEA+YRAL + CE+QWL+YL + LH+ + ++CDNQSA+ +
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHVTL-----IYCDNQSALQ*LP 362
Query: 632 QNPTFHERTKHIELDCHVVRTKLQAGLIH-LLPVSTRDQLADIFTKPLPPSLFPTFVLKL 690
+H + +E+DCH+VR K Q GL+H LLPVS+ +QLADIFTK L P LF + + KL
Sbjct: 363 IKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSKL 533
Query: 691 GL 692
GL
Sbjct: 534 GL 539
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 165 bits (417), Expect = 7e-41
Identities = 76/155 (49%), Positives = 102/155 (65%)
Frame = +2
Query: 540 KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCE 599
+L Y D+DWAGCP RRS +GY +F+G +L+SW++KKQT V+RSS+EAEYR++A + CE
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 600 VQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTFHERTKHIELDCHVVRTKLQAGLI 659
+ W+ Q L + L+CDNQ+A+HIA NP FHERTKHIE+DCH +R KL + I
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 660 HLLPVSTRDQLADIFTKPLPPSLFPTFVLKLGLYN 694
+ + DQ DI TK L KLG Y+
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYD 478
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 162 bits (411), Expect = 4e-40
Identities = 80/126 (63%), Positives = 93/126 (73%), Gaps = 1/126 (0%)
Frame = -2
Query: 222 VDLPPTKKPIGCKWVYRVKHKQDGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLR 281
V LPP K P+GC+WVY VK G +DR KARLVAKGYTQV G+DY DTFSPVAK TT+R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 282 LLLALAASQGWFLHQLDVDNAFLHGTLDEEIYMRLPPG-VSSPRPNQVCLLQKSLYGLKQ 340
L LA+AA W LHQLD+ NAFLHG L+E+IYM PPG V+ VC L +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 341 ASRQWY 346
+ R W+
Sbjct: 46 SPRAWF 29
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 157 bits (397), Expect = 1e-38
Identities = 76/134 (56%), Positives = 94/134 (69%)
Frame = +3
Query: 184 VSSTVEPTTYTQAAQCKEWRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWVYRVKHKQ 243
+SS P+T +A WR AM E++AL N TW +V LPP K +GC+WVY VK
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 244 DGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLDVDNAF 303
+G +DR KARLVAKGYTQV G++Y DTFSPV TT+RL LA+AA + W LHQLD+ NAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 304 LHGTLDEEIYMRLP 317
LHG L+E+IYM P
Sbjct: 363 LHGDLEEDIYMEQP 404
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 155 bits (392), Expect = 6e-38
Identities = 83/214 (38%), Positives = 123/214 (56%), Gaps = 3/214 (1%)
Frame = +1
Query: 473 DPTSYRRLVGRLLYLTTTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLF 532
D T +RRL+G L YL +RP++ + V +S+++ P H QAA RVLR +KG G G+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 533 FSATASL---KLQAYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRSSSEAE 589
F A L Y+DSDW P+ +S GY + ++ +KKQ ++ S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 590 YRALAAIVCEVQWLSYLFQFLHLRVPFPVPLFCDNQSAIHIAQNPTFHERTKHIELDCHV 649
Y A + C+ W+ L + L LR PV L DN+SAI++A++PT H R+KHIEL H
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 650 VRTKLQAGLIHLLPVSTRDQLADIFTKPLPPSLF 683
+R ++ G + + +QLAD+ TKP+ S F
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRF 651
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 146 bits (369), Expect = 3e-35
Identities = 72/137 (52%), Positives = 94/137 (68%)
Frame = -2
Query: 333 KSLYGLKQASRQWYNTLVAALKSLGYEQCPHDHTLLLKRTSTSITALLLYVDDVLLTGNS 392
KSLYGLKQASR+WY L L GY Q D++L + TALL+YVDD++L G+S
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241
Query: 393 FEEIQAVKSFLHSQFRIKDLGDLKFFLGLEVARSAKGICLTQRKYALELLTDAGLLGCKP 452
+E +K+ L F+IK+LG LK+FLGLEVA S GI ++QRKY L+LL D+GLLGCKP
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61
Query: 453 VRTPMDSTLHLSQTGGT 469
TP+D+++ L GT
Sbjct: 60 ASTPLDTSIKLHSAAGT 10
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 145 bits (365), Expect = 8e-35
Identities = 72/146 (49%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Frame = -3
Query: 205 AMDKELEALSRNNTWLIVDLPPTKKPIGCKWVYRVKHKQDGSIDRYKARLVAKGYTQVEG 264
AM +EL RNN W +V+ P IG KWV+R K + G I R KARLVAKGY Q EG
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 265 LDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLDVDNAFLHGTLDEEIYMRLPPGVSSP- 323
+DY +T++PVA+ +R+LLA + + L+Q+DV +AFL+G + EE+Y+ PPG P
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 324 RPNQVCLLQKSLYGLKQASRQWYNTL 349
+P V LQK+LYGLKQA R WY +
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERI 21
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 139 bits (350), Expect = 4e-33
Identities = 80/179 (44%), Positives = 106/179 (58%), Gaps = 2/179 (1%)
Frame = +1
Query: 245 GSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALAASQGWFLHQLDVDNAFL 304
G+ID++KARLVAK YTQV G DY TFSPVAK + LL ++A W L LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 305 HGTLDEEIYMRLPPG--VSSPRPNQVCLLQKSLYGLKQASRQWYNTLVAALKSLGYEQCP 362
HG L+EE+YM P G N VC L +S YGLKQ+ R W A ++ Y+
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGA--AIWYDSHE 381
Query: 363 HDHTLLLKRTSTSITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKFFLGL 421
DH++ + L++YVDD+ +TG+ I +K L QF+ KDLG L++FLG+
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>BM307983
Length = 406
Score = 135 bits (340), Expect = 6e-32
Identities = 67/132 (50%), Positives = 90/132 (67%), Gaps = 2/132 (1%)
Frame = +2
Query: 231 IGCKWVYRVKHKQDGSIDRYKARLVAKGYTQVEGLDYLDTFSPVAKTTTLRLLLALAASQ 290
+GC+W+Y VK+ D ++DRYKARLVAKGY Q G+DY +TF+ K +Q
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 291 -GWFLHQLDVDNAFLHGTLDEEIYMRLPPGV-SSPRPNQVCLLQKSLYGLKQASRQWYNT 348
GW +HQ DV NAFLHG+L+EE+YM +PPG +S N+VC L+K+LYGLKQ+ R W+
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 349 LVAALKSLGYEQ 360
A+ SLGY+Q
Sbjct: 362 FTQAMLSLGYKQ 397
>CO982036
Length = 674
Score = 132 bits (332), Expect = 5e-31
Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Frame = -2
Query: 376 ITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKFFLGLEVARSAKGICLTQR 435
+T LL D+++TG+S IQ + S L+S F +K LG L +F+ +EV +S + + R
Sbjct: 658 LTVYLLVYVDIIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEV-KSMPDLLFSLR 482
Query: 436 KYALELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDPTSYRRLVGRLLYLTTTRPDLN 495
E+ +P+ +PM +T LS++ L PT YR +VG L Y T RP+++
Sbjct: 481 TSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEIS 302
Query: 496 YVVQQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATAS---LKLQAYSDSDWAGC 552
+ V ++ Q++++P D H R+LRY+KG+ GL S L ++ + D+DWA
Sbjct: 301 FAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASA 122
Query: 553 PDTRRSINGYSIFLGSSLISWRTKKQ 578
D +RS +G ++FLG +LISW KQ
Sbjct: 121 VDDKRSTSGAAVFLGPNLISWWXXKQ 44
>BM086359
Length = 427
Score = 128 bits (321), Expect = 1e-29
Identities = 65/140 (46%), Positives = 87/140 (61%)
Frame = +1
Query: 419 LGLEVARSAKGICLTQRKYALELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDPTSYR 478
LG++VA+S+ GI ++Q KYAL++LT+ G+L C P TPMD + L G L+DP
Sbjct: 1 LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180
Query: 479 RLVGRLLYLTTTRPDLNYVVQQLSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATAS 538
LVGRL YLT TR D+ + V LSQ+L PTD A R+LRY+K APG GL + +
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLYEDKGN 360
Query: 539 LKLQAYSDSDWAGCPDTRRS 558
K+ Y D+DW G P + S
Sbjct: 361 GKVVCYFDADWPGSPSDKSS 420
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 116 bits (291), Expect(2) = 4e-28
Identities = 53/109 (48%), Positives = 72/109 (65%)
Frame = +2
Query: 546 DSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCEVQWLSY 605
D++WA P R S GY + +G +L+ W++ K V+RSS+EAEY+A+ CE+ W+
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 606 LFQFLHLRVPFPVPLFCDNQSAIHIAQNPTFHERTKHIELDCHVVRTKL 654
L Q L + L CDNQ+A+HIA NP FHERTKHIE+DCH VR K+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 26.9 bits (58), Expect(2) = 4e-28
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 664 VSTRDQLADIFTKPLPPSLFPTFVLKLGLY 693
VS+ DQLA+IFTK L KLG +
Sbjct: 363 VSSNDQLANIFTKSLRGPRIQNICSKLGAF 452
>BU764568
Length = 420
Score = 98.2 bits (243), Expect(2) = 4e-27
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +3
Query: 560 NGYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHLRVPFPVP 619
+GY + +G +LISW++KKQ+ V++SS+EAEYRA+A + CE+ WL L L +
Sbjct: 168 SGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQMT 347
Query: 620 LFCDNQSAIHIAQNPTFHERTKHI 643
L CDNQ+A+HIA NP FH RTKHI
Sbjct: 348 LICDNQAALHIASNPIFH*RTKHI 419
Score = 42.4 bits (98), Expect(2) = 4e-27
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 502 SQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATASLKLQAYSDSDWAGCPDTR 556
SQ+L SP H A + +L+ K APG+GL + ++ YSD+D G P R
Sbjct: 1 SQFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDR 165
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 117 bits (293), Expect = 2e-26
Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Frame = +2
Query: 364 DHTLLLKRTSTS-ITALLLYVDDVLLTGNSFEEIQAVKSFLHSQFRIKDLGDLKFFLGLE 422
DH++ TS L++YVDD+++T +I +K L + F+ KDL LK+FLG+E
Sbjct: 17 DHSVFYCHTSPGKCVYLMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFLGIE 196
Query: 423 VARSAKGICLTQRKYALELLTDAGLLGCKPVRTPMDSTLHLSQTGGTLLDDPTSYRRLVG 482
VA+S G+ ++QRKYAL++L + G+ C+ V +PMD L L + DP YRRLVG
Sbjct: 197 VAQSGDGVVISQRKYALDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRRLVG 376
Query: 483 RLLYLTTTRPDLNY 496
+L+YLT TRPD+++
Sbjct: 377 KLIYLTITRPDISF 418
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 87.4 bits (215), Expect(2) = 4e-26
Identities = 42/93 (45%), Positives = 57/93 (61%)
Frame = +1
Query: 182 TNVSSTVEPTTYTQAAQCKEWRDAMDKELEALSRNNTWLIVDLPPTKKPIGCKWVYRVKH 241
T + +T EP+T QA WR AM + +AL N T + LP K I CKWV+R+K
Sbjct: 10 TLLFTTAEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKE 189
Query: 242 KQDGSIDRYKARLVAKGYTQVEGLDYLDTFSPV 274
G+++RY++RLVAKG+ G DY +TFSPV
Sbjct: 190 NLYGTLNRYRSRLVAKGFHLKFGCDYSETFSPV 288
Score = 49.7 bits (117), Expect(2) = 4e-26
Identities = 22/41 (53%), Positives = 30/41 (72%)
Frame = +3
Query: 279 TLRLLLALAASQGWFLHQLDVDNAFLHGTLDEEIYMRLPPG 319
T+RL+L +A + W L Q+D++NAFLHG L EE+YM PG
Sbjct: 300 TIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPG 422
>BU549979
Length = 615
Score = 115 bits (289), Expect = 5e-26
Identities = 62/194 (31%), Positives = 106/194 (53%), Gaps = 2/194 (1%)
Frame = -1
Query: 501 LSQYLASPTDLHQQAATRVLRYVKGAPGQGLFFSATASLKLQAYSDSDWAGCPDTRRSIN 560
L +Y ++P H + A +V+RY++G L + T L++ YSDSD+AGC D+RRS +
Sbjct: 612 LGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTS 433
Query: 561 GYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCEVQWLSYLFQFLHL--RVPFPV 618
GY L ++SWR+ KQT ++ S+ E E+ WL L + + P+
Sbjct: 432 GYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPL 253
Query: 619 PLFCDNQSAIHIAQNPTFHERTKHIELDCHVVRTKLQAGLIHLLPVSTRDQLADIFTKPL 678
L+CDN +A+ +A+N R+KHI++ V+R +++ + + V+T + D TK +
Sbjct: 252 KLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGM 73
Query: 679 PPSLFPTFVLKLGL 692
P F V+++ L
Sbjct: 72 TPKNFKDHVVRMEL 31
>BU548243
Length = 599
Score = 115 bits (287), Expect = 8e-26
Identities = 62/149 (41%), Positives = 88/149 (58%), Gaps = 1/149 (0%)
Frame = -1
Query: 543 AYSDSDWAGCPDTRRSINGYSIFLGSSLISWRTKKQTTVSRSSSEAEYRALAAIVCEVQW 602
A D+ WA D RS G +IFLG +LISW ++KQ ++SS+EAEYR++A E+ W
Sbjct: 596 ALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTW 417
Query: 603 LSYLFQFLHLRVPFPVP-LFCDNQSAIHIAQNPTFHERTKHIELDCHVVRTKLQAGLIHL 661
+ L + L++PF P + CDN+SA+ IA N FH RTKH+E+D V K+ + + +
Sbjct: 416 IQAL--LMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQI 243
Query: 662 LPVSTRDQLADIFTKPLPPSLFPTFVLKL 690
+ DQ A I TKPL + F KL
Sbjct: 242 FHIPALDQWAGILTKPLSSARFTFLKSKL 156
>BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 327
Score = 112 bits (280), Expect = 6e-25
Identities = 53/108 (49%), Positives = 74/108 (68%)
Frame = +2
Query: 389 TGNSFEEIQAVKSFLHSQFRIKDLGDLKFFLGLEVARSAKGICLTQRKYALELLTDAGLL 448
TGN +I +K L S F+ KDLG LK+FLG+EVA+S + ++QRKYAL++L + G+
Sbjct: 2 TGNDATKIVQLKEHLFSHFQTKDLGYLKYFLGIEVAQSGVDVVISQRKYALDILEETGMQ 181
Query: 449 GCKPVRTPMDSTLHLSQTGGTLLDDPTSYRRLVGRLLYLTTTRPDLNY 496
C+PV +PMD L L + DP YRRLVG+L+YLT TRPD+++
Sbjct: 182 NCRPVDSPMDPNLKLMADQSEIYHDPERYRRLVGKLIYLTITRPDISF 325
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,631,818
Number of Sequences: 63676
Number of extensions: 533260
Number of successful extensions: 3226
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 3112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3185
length of query: 694
length of database: 12,639,632
effective HSP length: 104
effective length of query: 590
effective length of database: 6,017,328
effective search space: 3550223520
effective search space used: 3550223520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0260.2