BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0260.13
(1003 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207357 346 3e-95
CA784342 117 3e-26
TC223903 109 7e-24
CA784095 similar to GP|20160807|dbj P0506B12.19 {Oryza sativa (j... 74 3e-13
TC204721 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 65 1e-10
TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 64 4e-10
TC204718 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 55 1e-07
TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragme... 54 3e-07
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragme... 54 4e-07
NP005385 DNA-directed RNA polymerase 47 4e-05
TC204720 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 43 8e-04
TC225227 similar to GB|AAF02830.1|6056366|AC009894 phosphoglycer... 41 0.003
TC228914 similar to UP|DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (... 39 0.015
TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, part... 39 0.015
AI900039 weakly similar to SP|O23920|HPPD_ 4-hydroxyphenylpyruva... 38 0.019
TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruva... 38 0.019
TC226795 similar to GB|AAP37767.1|30725490|BT008408 At2g43680 {A... 38 0.025
TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, par... 38 0.025
TC225231 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate ki... 38 0.025
TC204722 similar to UP|O04133 (O04133) SRC2, partial (7%) 37 0.033
>TC207357
Length = 943
Score = 346 bits (888), Expect = 3e-95
Identities = 169/201 (84%), Positives = 183/201 (90%)
Frame = +2
Query: 803 QCQSQLTALYADGIEGSYMEFAAYNLLCVIMHSNNNRDLLSSMTRLSDEAKKDEAVKHAL 862
QCQSQL LYA+GIEGS MEFAAYNLLCVIMHSNNNRDL+SSM RLS EAKKDEAVKHAL
Sbjct: 32 QCQSQLQTLYAEGIEGSDMEFAAYNLLCVIMHSNNNRDLVSSMARLSHEAKKDEAVKHAL 211
Query: 863 AVRAAVTSGNYVAFFRLYKEAPNLNTCLMDLYVEKMRYKAVSCMCRSYRPTVPVSYISHV 922
AVRAAVTSGNY+AFFRLYK APNLNTCLMDLY EKMRYKA +CMCRSYRPT+PVSYIS V
Sbjct: 212 AVRAAVTSGNYIAFFRLYKAAPNLNTCLMDLYAEKMRYKAANCMCRSYRPTLPVSYISRV 391
Query: 923 LGFSTSAVANGGSDEKDTEAFEECLEWLKAHGASIMTDNNKDILVDTKVSSSSLFMPEPE 982
LGFST NG SDE +T+A EEC EWLKAHGASI+TDNN D+L+DTKVSSS+LF+PEPE
Sbjct: 392 LGFSTGMATNGASDEGETDALEECSEWLKAHGASIITDNNGDMLLDTKVSSSNLFVPEPE 571
Query: 983 DAVAHGDANLAVNDFLAKAPL 1003
DAVAHGDANLAV+DFLA+APL
Sbjct: 572 DAVAHGDANLAVDDFLARAPL 634
>CA784342
Length = 418
Score = 117 bits (293), Expect = 3e-26
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = -2
Query: 303 QPAAINSGDHDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGT 360
QPAA+NSGDHDGYW HGAQ+SQI QTNPIQPNYQSPLDLKSSYD FQDQQKTVSSQGT
Sbjct: 174 QPAAVNSGDHDGYWKHGAQSSQIQQTNPIQPNYQSPLDLKSSYDKFQDQQKTVSSQGT 1
>TC223903
Length = 486
Score = 109 bits (272), Expect = 7e-24
Identities = 48/68 (70%), Positives = 52/68 (75%)
Frame = +1
Query: 1 MANEGTNTETLVPAQPHQFENRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNP 60
MANEG+N ETL PA+PH FENRH D Q+ P SY PTT GS+A W V SST NG YSNP
Sbjct: 283 MANEGSNAETLAPAEPHLFENRHVDANQHHPTSYVPTTTGSEAAPWTVHSSTGNGVYSNP 462
Query: 61 TYQYDQHP 68
TYQYDQHP
Sbjct: 463 TYQYDQHP 486
>CA784095 similar to GP|20160807|dbj P0506B12.19 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 436
Score = 73.9 bits (180), Expect = 3e-13
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +2
Query: 484 VMKEMITKATADGTLCTRNWDMEPLFPMPDSDVVNKDSVLS 524
VMKE+ITKATADGTL TRNWDMEPLFPMPD+DV+NK+ +S
Sbjct: 2 VMKEIITKATADGTLNTRNWDMEPLFPMPDADVINKEYAVS 124
>TC204721 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (30%)
Length = 1762
Score = 65.5 bits (158), Expect = 1e-10
Identities = 86/332 (25%), Positives = 119/332 (34%), Gaps = 21/332 (6%)
Frame = +2
Query: 28 QNQPPS-YAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAG 86
Q++PPS +AP P Q VQ G YS P+ QY+ QP AG
Sbjct: 542 QSRPPSNWAPPAPTQQPGYGYVQP----GAYSGPSPQYNMPQQP-------------YAG 670
Query: 87 NSSNLGTANVPQDYNAY-TSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNT 145
PQ + Y T++ S+ P S GYY Y QQP Q QN
Sbjct: 671 YP--------PQQPDGYSTNWDQSTAPPHQQSTHGGGYYY-YSQQPQQP--------QNP 799
Query: 146 GAP-----------YQPISSFQNTGSYAGSANYSSTYYN-PAPADYQTTGVYQNSTGYAN 193
G P QP SS N + G A S YN + + Y Y GY +
Sbjct: 800 GGPAPPADGSAYNYSQPPSSGYNQSAQQGYAQDSYNAYNAQSQSGYGQPPTYDQQQGYGS 979
Query: 194 QAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGT 253
++ P G ++YA + P S+ T + Q Q P ++ N
Sbjct: 980 ESNPAQEGHTANYAVQGDSAQAP---SAQPITVAQQGYPTNQLPSSNTANYPPQGTPQPG 1150
Query: 254 ENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSG--- 310
+ TS + +G G P PQ P Q A+PS+ ++ +G
Sbjct: 1151YGVPPTSQAAYGNQSQPGYGGAVQPGYGPQTYGAPQGGQPGYGQALPSYSNSSYGAGYTQ 1330
Query: 311 ----DHDGYWNHGAQTSQIHQTNPIQPNYQSP 338
DG N A S I + +P + SP
Sbjct: 1331TPAYTGDGNGNAQAPQSAIAKASP*YFGHPSP 1426
>TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (4%)
Length = 1519
Score = 63.5 bits (153), Expect = 4e-10
Identities = 101/411 (24%), Positives = 139/411 (33%), Gaps = 41/411 (9%)
Frame = +3
Query: 17 HQFENRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQ 76
+ +++R P NQP YAP G+ +SS +G P + + P G
Sbjct: 120 YDYQHRGPFPAHNQP--YAPAPYGNYPQHMTPRSSFGSGWEQRPHHSFQGPPPHNG---- 281
Query: 77 DGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYS 136
G+ +L D T PSS+ PYG G + Q N Y
Sbjct: 282 ---GYEYYGGHGGHLS------DAPPSTQLPSSAPPYGAGPSPVPSM-GPTPAQVNYNYG 431
Query: 137 QPVG-------AYQNTGAPYQPI------SSFQNTG----SYAGSANYSSTYYN------ 173
QP G Y G P Q S ++N SY G N STY
Sbjct: 432 QPQGQDYGHQTTYSQAGLPQQGYGQGYDESKYENRAPTQHSYGGHVNSQSTYPQAGAQPN 611
Query: 174 -PAPADYQTTGVYQNSTGYANQAPPWNNGS--YSSYASHPHTNYTPDSNSSGAATTSVQY 230
PAP + +Y G + PP + G + P+ TP + T Y
Sbjct: 612 YPAPQQFGKPPLY----GMPSGQPPQSYGPPRATQPGDMPYQGSTPAQSYGTNMPTQQPY 779
Query: 231 QQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPI--PAATSGYATPNSQPQQSYPP 288
P Y AP T+ S ++ G P PAA Y P +QP SY
Sbjct: 780 PYAVSGPSQTAY--PSYGSAPATDGYSHPPPAS-GPPYTQPAAQPTYGQPAAQPAASYAQ 950
Query: 289 -----YWRQDSSASAVPSFQPAAINS-----GDHDGYWNHGAQTSQIHQTNPIQPNYQSP 338
Y SS + P QPA N+ D ++ GA + QP Y P
Sbjct: 951 VGPTGYGSYPSSQPSYPE-QPAPNNAVYGYQAPQDPGYSTGAAPAYSTAQPSGQPGYVQP 1127
Query: 339 LDLKSSYDNFQDQ---QKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQSAP 386
++ Y+ Q V + + +Y P P Q ST + AP
Sbjct: 1128TPTQTGYEQSNTQPAGYAAVPASASAVYGKTLSP-QPAAYQYDSTQVYGAP 1277
Score = 36.6 bits (83), Expect = 0.056
Identities = 58/233 (24%), Positives = 82/233 (34%), Gaps = 39/233 (16%)
Frame = +3
Query: 194 QAPPWNNGSYSSYASH-------PHTNYTPDS-----------NSSGAATTSVQYQQQQQ 235
Q PP +NG Y Y H P + P S S G V Y Q
Sbjct: 258 QGPPPHNGGYEYYGGHGGHLSDAPPSTQLPSSAPPYGAGPSPVPSMGPTPAQVNYNYGQP 437
Query: 236 NPWADYYNQTEVSCA-------------PGTENLSVTSSSTFGGPIPAATS---GYATPN 279
DY +QT S A EN + T S +GG + + ++ A PN
Sbjct: 438 Q-GQDYGHQTTYSQAGLPQQGYGQGYDESKYENRAPTQHS-YGGHVNSQSTYPQAGAQPN 611
Query: 280 SQPQQSY--PPYWRQDSSASAVPSFQPAAINSGDHDGYWNHGAQTSQIHQTN-PIQPNYQ 336
Q + PP + S P A GD G+ +Q + TN P Q Y
Sbjct: 612 YPAPQQFGKPPLYGMPSGQPPQSYGPPRATQPGDMP---YQGSTPAQSYGTNMPTQQPYP 782
Query: 337 SPLD--LKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVVSTPIQSAPS 387
+ +++Y ++ S+ T+ Y PPP PP Q + P P+
Sbjct: 783 YAVSGPSQTAYPSYG------SAPATDGYSHPPPASGPPYTQPAAQPTYGQPA 923
>TC204718 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (5%)
Length = 1417
Score = 55.5 bits (132), Expect = 1e-07
Identities = 79/292 (27%), Positives = 103/292 (35%), Gaps = 17/292 (5%)
Frame = +2
Query: 36 PTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSS-NLGTA 94
P P Q+ VQ G YS P QY+ QP G S G S+ N +
Sbjct: 20 PAAPMQQSGYGYVQP----GAYSGPP-QYNVPQQPYA-----GYPPQSSGGYSAANWDQS 169
Query: 95 NVPQDYNAYTSYP--SSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTG-----A 147
PQ +A+ Y S + G NY Q P+ YSQP Y G A
Sbjct: 170 TAPQQQSAHAGYDYYSQQQQQQNPAPPSDGTAYNYSQPPSSGYSQPGQGYAQDGYGGYHA 349
Query: 148 P----YQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSY 203
P Y S+ Y+ +A+Y S NPAP + S G + QAPP
Sbjct: 350 PPQSGYGQPPSYDQQQGYSSAASYGS---NPAPEGHTAN---YGSQGDSTQAPP------ 493
Query: 204 SSYASHPHTNY-TPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSS 262
A P Y T S AA + Q Q PG + +
Sbjct: 494 ---AQPPSQGYGTGQQPSPNAANYAPQAQ-------------------PGYGVPPTSQPA 607
Query: 263 TFGGPIPAAT---SGYATPNSQPQQSYPPYWRQDSSASAVPSF-QPAAINSG 310
T+G PA + SGY P +Q PP + Q S + + Q + SG
Sbjct: 608 TYGSQPPAQSGYGSGYGPPQTQKPSGTPPVYGQSQSPNTAGGYGQSGHLQSG 763
Score = 39.3 bits (90), Expect = 0.009
Identities = 55/213 (25%), Positives = 70/213 (32%), Gaps = 1/213 (0%)
Frame = +2
Query: 26 PGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVA 85
PG PP+ P T GSQ + S GY P Q +P G V
Sbjct: 572 PGYGVPPTSQPATYGSQPPA----QSGYGSGYGPP-----QTQKPSG--------TPPVY 700
Query: 86 GNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGY-TGYYNNYQQQPNQTYSQPVGAYQN 144
G S + TA GYG +G+ Y Q P+ Y+QP
Sbjct: 701 GQSQSPNTAG------------------GYGQSGHLQSGYPPSQPPPSGGYAQP-----E 811
Query: 145 TGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYS 204
+G+ P S + A Y Y APA Q GY P ++N SY
Sbjct: 812 SGSQKAPPSGYGG----AVQPGYGPPSYGGAPAGGQ--------PGYGQAPPSYSNSSYG 955
Query: 205 SYASHPHTNYTPDSNSSGAATTSVQYQQQQQNP 237
+ Y+ D N G TT Y P
Sbjct: 956 AAGYAQPPVYSSDGNVGG--TTRGAYDGAPAQP 1048
>TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragment) , partial
(96%)
Length = 2604
Score = 53.9 bits (128), Expect = 3e-07
Identities = 80/330 (24%), Positives = 122/330 (36%), Gaps = 1/330 (0%)
Frame = +1
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNL 91
P Y+P++PG S ++ ++PTY P PG S +S
Sbjct: 1123 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYS----PSSPGYS------------PTSPA 1254
Query: 92 GTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQP 151
+ P SY +S Y S Y+ +Y + YS AY T Y P
Sbjct: 1255 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSP 1431
Query: 152 ISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPH 211
S S + +S Y+P Y T S Y+ +P ++ S + + P
Sbjct: 1432 TSP---------SYSPTSPSYSPTSPSYSPT-----SPSYSPTSPSYSPTSPAYSPTSP- 1566
Query: 212 TNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAA 271
Y+P S S + S NP + Y+ + ++ +P + LS +S + P +
Sbjct: 1567 -GYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPS-LAYSPSSPRLSPSSPYSPTSPNYSP 1740
Query: 272 TSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAA-INSGDHDGYWNHGAQTSQIHQTNP 330
TS +P S SY P + P++ P++ NSG Y Q S +P
Sbjct: 1741 TSPSYSPTS---PSYSP---------SSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSP 1884
Query: 331 IQPNYQSPLDLKSSYDNFQDQQKTVSSQGT 360
QP Y SP SS + Q GT
Sbjct: 1885 SQPGY-SP----SSTSQYTPQTSDKDDGGT 1959
>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragment) ,
complete
Length = 1826
Score = 53.5 bits (127), Expect = 4e-07
Identities = 80/330 (24%), Positives = 120/330 (36%), Gaps = 1/330 (0%)
Frame = +3
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNL 91
P Y+PT+PG S ++ ++PTY P PG S
Sbjct: 666 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS----PSSPGYS----------------- 782
Query: 92 GTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQP 151
P SY +S Y S Y+ +Y + +YS AY T Y P
Sbjct: 783 --PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPAYSP 953
Query: 152 ISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPH 211
S S + +S Y+P Y T S Y+ +P ++ S + + P
Sbjct: 954 TSP---------SYSPTSPSYSPTSPSYSPT-----SPSYSPTSPSYSPTSPAYSPTSP- 1088
Query: 212 TNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAA 271
Y+P S S + S NP + Y+ + ++ +P + LS +S + P +
Sbjct: 1089-GYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPS-LAYSPSSPRLSPSSPYSPTSPNYSP 1262
Query: 272 TSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAA-INSGDHDGYWNHGAQTSQIHQTNP 330
TS +P S SY P + P++ P++ NSG Y Q S +P
Sbjct: 1263TSPSYSPTS---PSYSP---------SSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSP 1406
Query: 331 IQPNYQSPLDLKSSYDNFQDQQKTVSSQGT 360
QP Y SP SS + Q GT
Sbjct: 1407SQPGY-SP----SSTSQYTPQTSDKDDGGT 1481
>NP005385 DNA-directed RNA polymerase
Length = 2934
Score = 47.0 bits (110), Expect = 4e-05
Identities = 64/259 (24%), Positives = 100/259 (37%), Gaps = 1/259 (0%)
Frame = +1
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNL 91
P Y+P++PG S ++ ++PTY P PG S S +S
Sbjct: 2206 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYS----PSSPGYS-----PTSPAYSPTSPS 2358
Query: 92 GTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQP 151
+ P +Y S+S Y S Y+ Y + +YS +Y T Y P
Sbjct: 2359 YSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAY-SPTSPSYSLTSPSYSPTSPSYSP 2535
Query: 152 ISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHPH 211
S S + +S Y+P Y T S Y+ +P +N S + Y+ P
Sbjct: 2536 TSP---------SYSPTSPAYSPTSPSYSPT-----SPSYSPTSPSYNPQS-AKYS--PS 2664
Query: 212 TNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFG-GPIPA 270
Y+P +S + TS Y +P + Y+ T S +P + S +S G P +
Sbjct: 2665 LAYSP--SSPRLSPTSPNY-----SPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYS 2823
Query: 271 ATSGYATPNSQPQQSYPPY 289
TS +P++ S P Y
Sbjct: 2824 PTSPQFSPSAGYSPSQPGY 2880
Score = 40.0 bits (92), Expect = 0.005
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 7/203 (3%)
Frame = +1
Query: 32 PSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSSNL 91
PSY+PT+P S A S++ ++P+Y P P S +S
Sbjct: 2353 PSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYS----PTSPAYS------------PTSPS 2484
Query: 92 GTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAPYQP 151
+ P SY +S Y S Y+ +Y + +YS +Y A Y P
Sbjct: 2485 YSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYNPQSAKYSP 2661
Query: 152 ISSFQNTGSYAG--SANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYAS- 208
++ + S NYS T +P+ T+ Y S+ + + P+N+G Y+
Sbjct: 2662 SLAYSPSSPRLSPTSPNYSPT----SPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPT 2829
Query: 209 ----HPHTNYTPDSNSSGAATTS 227
P Y+P ++TS
Sbjct: 2830 SPQFSPSAGYSPSQPGYSPSSTS 2898
>TC204720 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (31%)
Length = 1936
Score = 42.7 bits (99), Expect = 8e-04
Identities = 52/195 (26%), Positives = 67/195 (33%), Gaps = 10/195 (5%)
Frame = +1
Query: 126 NYQQQPNQTYSQPVGAYQNTG-----APYQPISSFQNTGSYAGSANYSST-YYNPAPADY 179
NY Q P+ Y+QP Y G AP P + SY YSS Y PA
Sbjct: 949 NYSQPPSSGYNQPGQGYAQDGYGGYHAP--PQLGYGQPPSYDQQQGYSSAPSYGSNPAQE 1122
Query: 180 QTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPWA 239
T Y S G + QAPP A P Y S + + Y Q Q
Sbjct: 1123 GHTANY-GSQGDSTQAPP---------AQPPSQGY---GTSQQPSPNAANYPPQAQ---- 1251
Query: 240 DYYNQTEVSCAPGTENLSVTSSSTFGGPIPAAT---SGYATPNSQPQQSYPPYWRQDSSA 296
PG + + +G PA + SGY P +Q PP + Q S
Sbjct: 1252 -----------PGYGVPPTSQPAAYGSQPPAQSGYGSGYGPPQTQKPSGTPPVYGQSQSP 1398
Query: 297 SAVPSF-QPAAINSG 310
+ + Q + SG
Sbjct: 1399 NTAGGYGQSGHLQSG 1443
Score = 32.3 bits (72), Expect = 1.1
Identities = 44/170 (25%), Positives = 54/170 (30%), Gaps = 3/170 (1%)
Frame = +1
Query: 255 NLSVTSSSTFGGPIPA-ATSGYATPNSQPQQSY--PPYWRQDSSASAVPSFQPAAINSGD 311
N S SS + P A GY ++ PQ Y PP + Q S+ PS+ G
Sbjct: 949 NYSQPPSSGYNQPGQGYAQDGYGGYHAPPQLGYGQPPSYDQQQGYSSAPSYGSNPAQEGH 1128
Query: 312 HDGYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLP 371
Y + G T Q P QP Q Y Q P P
Sbjct: 1129 TANYGSQGDST----QAPPAQPPSQ-------GYGTSQQ--------------PSPNAAN 1233
Query: 372 PPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKIEKDSST 421
PPQ + P P Q P S YG P+ +K S T
Sbjct: 1234 YPPQ---AQPGYGVPPTSQPAAYGSQPPAQSGYGSG--YGPPQTQKPSGT 1368
>TC225227 similar to GB|AAF02830.1|6056366|AC009894 phosphoglycerate kinase
{Arabidopsis thaliana;} , partial (35%)
Length = 612
Score = 40.8 bits (94), Expect = 0.003
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +2
Query: 320 AQTSQIHQTNPIQPN-YQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLPPPPQQVV 378
+ T Q NP+Q Y L L S Q Q +S T PPPPP PPPP +
Sbjct: 11 SSTKQ*KPPNPLQLTPYTLSLSLSLSLQWPQPQPPQLSLSSTPPPRPPPPPPPPPPPRAC 190
Query: 379 STPIQSAPSLDAKRVSKMQIPTNPRIASNLT 409
S+P PS A+ + + P R + ++
Sbjct: 191 SSP---PPSARARSRAALASPRRTRCSRRMS 274
>TC228914 similar to UP|DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1),
partial (3%)
Length = 784
Score = 38.5 bits (88), Expect = 0.015
Identities = 50/210 (23%), Positives = 75/210 (34%), Gaps = 8/210 (3%)
Frame = +3
Query: 253 TENLSVTSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGDH 312
T + T +T PA+ + P+S P S P S+ P P+A
Sbjct: 84 TRTTTATRRTTTSTLPPASPRSSSPPSSPPSPSTTP---TSSAPGNAPHSSPSASKRRPT 254
Query: 313 DGYWNHGAQTS-QIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLYLPPPPPLP 371
+ A TS + T+ +SP S+ S GT++ P PP P
Sbjct: 255 PSGPSSAASTSPKPTSTSSRAAPSKSPFTWPSA------------SLGTSMSSPASPPPP 398
Query: 372 PPPQQVVSTPIQSAPSL---DAKRVSKMQIPTNPRIASNLT----YGQPKIEKDSSTTNT 424
P ST ++P+L A S P+ P I S T P +S+T+
Sbjct: 399 APNASTSSTTSAASPALASSAANTASATTAPSLPSIPSRTTPTTARSTPSSSNPTSSTSP 578
Query: 425 ALKPAYLAVSLPKSTEKISSNDAANSILKP 454
P VS P + +S + S +P
Sbjct: 579 TATPKRTRVSSPTPSSSSTSRSSPPSPKEP 668
>TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, partial (59%)
Length = 2299
Score = 38.5 bits (88), Expect = 0.015
Identities = 66/276 (23%), Positives = 90/276 (31%), Gaps = 29/276 (10%)
Frame = +2
Query: 208 SHPHTNYTPDSNSSGAA---------TTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSV 258
S P TP N+ A TTS D + T PG
Sbjct: 353 SSPPVQPTPQVNNDPAIIQSHYPHPITTSTNLPSAVSGSLTDPSSHTTQHGLPG------ 514
Query: 259 TSSSTFGGPIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGDHDGYWNH 318
S F GP+P G N + PP + A+P GY+
Sbjct: 515 ---SNFQGPLPLYQPG---GNIGSWGASPPAPNANGGRLAMPPMY--------WQGYYGA 652
Query: 319 GAQTSQIHQTNPIQP----NYQSPLDLKSSYDNFQDQQKTVSSQGTNL---YLP------ 365
Q+HQ + +QP + S + Y N TVSS L LP
Sbjct: 653 PNGLPQLHQQSLLQPPPGLSMPSSMQQPMQYPNITPPLPTVSSNLPELPSSLLPASASTP 832
Query: 366 -------PPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKIEKD 418
PP LPP P + P P+ A +S +P ++ L +
Sbjct: 833 SITSASLPPSNLPPAPSALAPAPSALPPAPSA--LSPSSSALSPAPSATLASENLPVSVT 1006
Query: 419 SSTTNTALKPAYLAVSLPKSTEKISSNDAANSILKP 454
+ N + A LA +LP T IS D N+I+ P
Sbjct: 1007NKAPNVSTSAAMLAANLPSLT--ISGPD-INAIVPP 1105
>AI900039 weakly similar to SP|O23920|HPPD_ 4-hydroxyphenylpyruvate
dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase).
[Carrot], partial (16%)
Length = 429
Score = 38.1 bits (87), Expect = 0.019
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 365 PPPPPLPPPPQQVVSTPIQSAPSL----DAKRVSKMQIPTNPRIASNLTYGQP 413
PP PPLPPPP VSTP + PSL A S + PT +++ + +P
Sbjct: 87 PPAPPLPPPPPFPVSTPPPALPSLPNTASASAPSPWKSPTRKPLSAPASRKEP 245
>TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (35%)
Length = 598
Score = 38.1 bits (87), Expect = 0.019
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 365 PPPPPLPPPPQQVVSTPIQSAPSL----DAKRVSKMQIPTNPRIASNLTYGQP 413
PP PPLPPPP VSTP + PSL A S + PT +++ + +P
Sbjct: 323 PPAPPLPPPPPFPVSTPPPALPSLPNTASASAPSPWKSPTRKPLSAPASRKEP 481
>TC226795 similar to GB|AAP37767.1|30725490|BT008408 At2g43680 {Arabidopsis
thaliana;} , partial (14%)
Length = 437
Score = 37.7 bits (86), Expect = 0.025
Identities = 22/89 (24%), Positives = 44/89 (48%), Gaps = 8/89 (8%)
Frame = +1
Query: 327 QTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQG--------TNLYLPPPPPLPPPPQQVV 378
+TN P ++ P ++ + +F+ +Q+ + + T Y+PP P P PP
Sbjct: 67 ETNSFIPLFREPSSIEKIFGDFEREQQLLGLRTATPPERPKTPPYVPPRAPSPRPPSPRA 246
Query: 379 STPIQSAPSLDAKRVSKMQIPTNPRIASN 407
+P +P + RV+ ++ T+P+ AS+
Sbjct: 247 PSPRPPSPRAASPRVASPRV-TSPKAASS 330
>TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, partial (8%)
Length = 1061
Score = 37.7 bits (86), Expect = 0.025
Identities = 44/193 (22%), Positives = 69/193 (34%), Gaps = 7/193 (3%)
Frame = +1
Query: 160 SYAGSANYSSTYYNPAPADYQTTGVYQNS-TGYANQAPPWNNGSYSSYASHPHTNYTPDS 218
S AG+++ SST NP PA + T T PWN + + + P +
Sbjct: 187 STAGTSS-SSTSTNPTPASFSATAPTSTPWTSNLRNRIPWN*ATP*CATATASRSSAPPT 363
Query: 219 NSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGYATP 278
SS + T + + ++ S AP + S+++ P P TS A P
Sbjct: 364 ASSASPTLLTTSPSGTLSSASTVFSPPTASTAPNPPSSPPASTASATTPPPTTTSS*ALP 543
Query: 279 NSQPQQSYPPYWRQDSSAS--AVPSFQPAAINSGDHDGYWNHGAQT----SQIHQTNPIQ 332
S ++ P R S+ S PA W + S +NP
Sbjct: 544 TSWISRNAPSIPRSSSTPSNPTPGRTSPACPTPSAAPAPWASSSPAPSTGSSPENSNPTN 723
Query: 333 PNYQSPLDLKSSY 345
P SPL ++ +
Sbjct: 724 PISSSPLTSRARH 762
>TC225231 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kinase,
chloroplast precursor , partial (86%)
Length = 1778
Score = 37.7 bits (86), Expect = 0.025
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 354 TVSSQGTNLYLPPPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRI 404
++SS L PPPPP PPPP + S+P SAP+ A S + + R+
Sbjct: 47 SLSSTPPPLPPPPPPPPPPPPPRACSSPPPSAPARCAAWASPRRTRCSRRV 199
>TC204722 similar to UP|O04133 (O04133) SRC2, partial (7%)
Length = 463
Score = 37.4 bits (85), Expect = 0.033
Identities = 41/151 (27%), Positives = 57/151 (37%), Gaps = 10/151 (6%)
Frame = +2
Query: 157 NTGSYAGSANYSSTYYNPA-------PADYQTTGVYQNSTGYANQAPPWNNGSYSSYASH 209
N GSA S YN P + Y +TGY + + P G ++YA+
Sbjct: 38 NQSGQQGSAQDSYDAYNAQSHSGYGQPPTFDQQQGYGPATGYGSGSNPAQEGHTANYAAR 217
Query: 210 PHTNYTPDSNSSGAATTSVQ--YQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGG- 266
+ P S TT VQ Y QQ P ++ N + + TS + +G
Sbjct: 218 GDSAQAP----SAQPTTVVQQGYPTNQQ-PSSNTVNYSLQGTPQPGYGVPPTSQAAYGNQ 382
Query: 267 PIPAATSGYATPNSQPQQSYPPYWRQDSSAS 297
P P GY TP SQ PP + + S
Sbjct: 383 PQP----GYGTPQSQKPTGNPPVYGESQFPS 463
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.125 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,214,652
Number of Sequences: 63676
Number of extensions: 682508
Number of successful extensions: 11953
Number of sequences better than 10.0: 364
Number of HSP's better than 10.0 without gapping: 6257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9269
length of query: 1003
length of database: 12,639,632
effective HSP length: 107
effective length of query: 896
effective length of database: 5,826,300
effective search space: 5220364800
effective search space used: 5220364800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0260.13